AT4G34620 : small subunit ribosomal protein 16
Query Information
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AGICode AT4G34620
Description small subunit ribosomal protein 16
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 1 0.32 -0.32
2 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.95 0.33 -0.32
3 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.95 0.33 -0.3
4 AT5G65220 Ribosomal L29 family protein 0.94 0.32 -0.29
5 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.94 0.32 -0.32
6 AT2G43030 Ribosomal protein L3 family protein 0.94 0.33 -0.35
7 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.94 0.29 -0.3
8 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.94 0.33 -0.32
9 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.93 0.31 -0.32
10 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.93 0.34 -0.32
11 AT5G47190 Ribosomal protein L19 family protein 0.93 0.33 -0.32
12 AT4G17560 Ribosomal protein L19 family protein 0.92 0.31 -0.32
13 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.92 0.33 -0.3
14 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.92 0.29 -0.34
15 AT2G33450 Ribosomal L28 family 0.92 0.32 -0.31
16 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.92 0.35 -0.31
17 AT3G12930 Lojap-related protein 0.92 0.33 -0.3
18 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.92 0.3 -0.32
19 AT5G54600 Translation protein SH3-like family protein 0.92 0.31 -0.31
20 AT3G54210 Ribosomal protein L17 family protein 0.91 0.33 -0.29
21 AT3G08740 elongation factor P (EF-P) family protein 0.91 0.33 -0.29
22 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.91 0.3 -0.32
23 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.91 0.3 -0.31
24 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.91 0.33 -0.29
25 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.91 0.32 -0.29
26 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.91 0.32 -0.3
27 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.91 0.31 -0.32
28 AT1G53520 Chalcone-flavanone isomerase family protein 0.91 0.31 -0.33
29 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.91 0.33 -0.31
30 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.91 0.3 -0.31
31 AT4G30580 Phospholipid/glycerol acyltransferase family protein ATS2, EMBRYO DEFECTIVE 1995,
lysophosphatidic acid
acyltransferase 1		 0.91 0.32 -0.33
32 AT2G45270 glycoprotease 1 glycoprotease 1 0.9 0.29 -0.31
33 AT4G25050 acyl carrier protein 4 acyl carrier protein 4 0.9 0.3 -0.33
34 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.9 0.33 -0.34
35 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.9 0.32 -0.3
36 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.9 0.3 -0.3
37 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.9 0.31 -0.3
38 AT1G10960 ferredoxin 1 ferredoxin 1, ferredoxin 1 0.9 0.31 -0.32
39 AT5G55220 trigger factor type chaperone family protein 0.9 0.32 -0.31
40 AT1G14270 CAAX amino terminal protease family protein 0.9 0.31 -0.33
41 AT5G11270 overexpressor of cationic peroxidase 3 overexpressor of cationic
peroxidase 3		 0.9 0.32 -0.31
42 AT2G18710 SECY homolog 1 SECY homolog 1 0.9 0.29 -0.31
43 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.9 0.28 -0.33
44 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.9 0.31 -0.31
45 AT1G06190 Rho termination factor 0.89 0.34 -0.31
46 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.89 0.33 -0.32
47 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.89 0.31 -0.32
48 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.89 0.33 -0.31
49 AT3G62030 rotamase CYP 4 cyclophilin 20-3, rotamase CYP 4 0.89 0.31 -0.33
50 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.89 0.3 -0.31
51 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.89 0.32 -0.31
52 AT1G60230 Radical SAM superfamily protein 0.89 0.32 -0.32
53 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.89 0.29 -0.31
54 AT1G29070 Ribosomal protein L34 0.89 0.31 -0.35
55 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.89 0.32 -0.32
56 AT2G21860 violaxanthin de-epoxidase-related 0.89 0.33 -0.3
57 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.89 0.32 -0.31
58 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.89 0.3 -0.31
59 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.89 0.32 -0.3
60 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.89 0.31 -0.31
61 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.89 0.3 -0.29
62 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.89 0.32 -0.32
63 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.89 0.32 -0.31
64 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.33 -0.31
65 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.89 0.33 -0.31
66 AT3G47650 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.88 0.34 -0.32
67 AT5G35630 glutamine synthetase 2 GLUTAMINE SYNTHETASE LIKE 1,
GLUTAMINE SYNTHETASE 2, glutamine
synthetase 2		 0.88 0.29 -0.32
68 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.88 0.32 -0.33
69 AT4G26370 antitermination NusB domain-containing protein 0.88 0.31 -0.31
70 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.88 0.32 -0.32
71 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.88 0.31 -0.3
72 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.88 0.31 -0.34
73 AT4G37510 Ribonuclease III family protein 0.88 0.31 -0.31
74 AT4G37040 methionine aminopeptidase 1D methionine aminopeptidase 1D 0.88 0.32 -0.33
75 AT5G52970 thylakoid lumen 15.0 kDa protein 0.88 0.31 -0.31
76 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.31 -0.31
77 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.88 0.32 -0.31
78 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.87 0.32 -0.31
79 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.87 0.31 -0.33
80 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.87 0.34 -0.32
81 AT3G60750 Transketolase 0.87 0.29 -0.35
82 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.87 0.31 -0.3
83 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.87 0.31 -0.33
84 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.87 0.3 -0.34
85 AT4G30950 fatty acid desaturase 6 fatty acid desaturase 6, FATTY
ACID DESATURASE C, STEAROYL
DESATURASE DEFICIENCY 4		 0.87 0.31 -0.31
86 AT2G24090 Ribosomal protein L35 0.87 0.32 -0.31
87 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.87 0.3 -0.28
88 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.87 0.3 -0.32
89 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.87 0.3 -0.3
90 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.3 -0.32
91 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.87 0.31 -0.31
92 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.87 0.29 -0.34
93 AT5G46420 16S rRNA processing protein RimM family 0.87 0.33 -0.33
94 AT4G34730 ribosome-binding factor A family protein 0.86 0.33 -0.32
95 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.86 0.34 -0.29
96 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.86 0.3 -0.29
97 AT4G01310 Ribosomal L5P family protein 0.86 0.32 -0.32
98 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.86 0.31 -0.32
99 AT2G28000 chaperonin-60alpha CHLOROPLAST CHAPERONIN 60ALPHA,
chaperonin-60alpha,
chaperonin-60alpha1, SCHLEPPERLESS		 0.86 0.32 -0.3
100 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.86 0.33 -0.32
101 AT1G36390 Co-chaperone GrpE family protein 0.86 0.34 -0.29
102 AT4G34190 stress enhanced protein 1 stress enhanced protein 1 0.86 0.31 -0.32
103 AT3G63190 ribosome recycling factor, chloroplast precursor Arabidopsis thaliana chloroplast
ribosome recycling factor,
chloroplast ribosome recycling
factor, HIGH CHLOROPHYLL
FLUORESCENCE AND PALE GREEN MUTANT
108, ribosome recycling factor,
chloroplast precursor		 0.86 0.31 -0.31
104 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.86 0.31 -0.33
105 AT1G51100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26
Blast hits to 26 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.86 0.29 -0.32
106 AT3G19810 Protein of unknown function (DUF177) 0.86 0.32 -0.34
107 AT1G74970 ribosomal protein S9 ribosomal protein S9, TWN3 0.86 0.34 -0.31
108 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.86 0.29 -0.33
109 AT5G20720 chaperonin 20 ATCPN21, CHLOROPLAST CHAPERONIN
10, CHLOROPLAST CHAPERONIN 10,
chaperonin 20, CPN21		 0.86 0.32 -0.33
110 AT5G06750 Protein phosphatase 2C family protein -0.77 0.32 -0.32
111 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.76 0.33 -0.31
112 AT5G18780 F-box/RNI-like superfamily protein -0.76 0.31 -0.33
113 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.76 0.33 -0.31
114 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.75 0.33 -0.32
115 AT5G24090 chitinase A chitinase A, chitinase A -0.75 0.31 -0.35
116 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.75 0.31 -0.36
117 AT3G57380 Glycosyltransferase family 61 protein -0.74 0.33 -0.31
118 AT4G02360 Protein of unknown function, DUF538 -0.74 0.31 -0.31
119 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.74 0.31 -0.3
120 AT5G67340 ARM repeat superfamily protein -0.73 0.32 -0.3
121 AT5G38030 MATE efflux family protein -0.72 0.33 -0.32
122 AT3G54200 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.72 0.31 -0.33
123 AT4G26270 phosphofructokinase 3 phosphofructokinase 3 -0.71 0.29 -0.32
124 AT5G66650 Protein of unknown function (DUF607) -0.71 0.32 -0.3
125 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.71 0.34 -0.31
126 AT5G14130 Peroxidase superfamily protein -0.71 0.33 -0.32
127 AT3G26460 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.7 0.32 -0.32
128 AT5G37540 Eukaryotic aspartyl protease family protein -0.7 0.3 -0.33
129 AT5G18170 glutamate dehydrogenase 1 glutamate dehydrogenase 1 -0.69 0.31 -0.3
130 AT1G76040 calcium-dependent protein kinase 29 calcium-dependent protein kinase
29		 -0.67 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
131 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.76 0.41 -0.46 C0051