AT4G34830 : MATURATION OF RBCL 1
Query Information
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AGICode AT4G34830
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 1 0.32 -0.32
2 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.95 0.31 -0.33
3 AT3G10160 DHFS-FPGS homolog C A. THALIANA DHFS-FPGS HOMOLOG C,
DHFS-FPGS homolog C,
folylpolyglutamate synthetase 2		 0.92 0.32 -0.31
4 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.91 0.31 -0.3
5 AT1G26230 TCP-1/cpn60 chaperonin family protein chaperonin-60beta4 0.91 0.33 -0.31
6 AT4G28080 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.28 -0.3
7 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.91 0.33 -0.3
8 AT4G17740 Peptidase S41 family protein 0.9 0.31 -0.33
9 AT4G18240 starch synthase 4 ARABIDOPSIS THALIANA STARCH
SYNTHASE 4, starch synthase 4,
STARCH SYNTHASE 4		 0.9 0.31 -0.31
10 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A 0.9 0.29 -0.32
11 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.9 0.3 -0.33
12 AT5G04810 pentatricopeptide (PPR) repeat-containing protein 0.9 0.33 -0.3
13 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.9 0.31 -0.29
14 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.89 0.28 -0.34
15 AT3G18890 NAD(P)-binding Rossmann-fold superfamily protein translocon at the inner envelope
membrane of chloroplasts 62,
translocon at the inner envelope
membrane of chloroplasts 62		 0.89 0.29 -0.33
16 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.89 0.33 -0.32
17 AT3G16250 NDH-dependent cyclic electron flow 1 NDH-dependent cyclic electron flow
1, Photosynthetic NDH subcomplex
B 3		 0.88 0.32 -0.34
18 AT2G41720 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 2654 0.88 0.33 -0.31
19 AT5G02250 Ribonuclease II/R family protein ARABIDOPSIS THALIANA MITOCHONDRIAL
RNASE II, EMBRYO DEFECTIVE 2730,
ribonucleotide reductase 1		 0.88 0.32 -0.34
20 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.88 0.35 -0.32
21 AT5G62840 Phosphoglycerate mutase family protein 0.88 0.32 -0.3
22 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.87 0.31 -0.32
23 AT3G01440 PsbQ-like 1 Photosynthetic NDH subcomplex L
3, PsbQ-like 1, PsbQ-like 2		 0.87 0.32 -0.3
24 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.87 0.33 -0.34
25 AT4G24810 Protein kinase superfamily protein 0.87 0.3 -0.3
26 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 0.87 0.3 -0.32
27 AT3G02450 cell division protein ftsH, putative 0.87 0.32 -0.3
28 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.3 -0.31
29 AT1G42550 plastid movement impaired1 PLASTID MOVEMENT IMPAIRED1 0.87 0.31 -0.31
30 AT5G58260 oxidoreductases, acting on NADH or NADPH, quinone or
similar compound as acceptor		 NADH dehydrogenase-like complex N 0.87 0.35 -0.32
31 AT1G49380 cytochrome c biogenesis protein family 0.87 0.34 -0.31
32 AT1G78180 Mitochondrial substrate carrier family protein 0.87 0.32 -0.34
33 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.87 0.29 -0.31
34 AT5G39210 chlororespiratory reduction 7 CHLORORESPIRATORY REDUCTION 7 0.86 0.31 -0.3
35 AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B subunit glyceraldehyde-3-phosphate
dehydrogenase B subunit		 0.86 0.31 -0.33
36 AT1G68010 hydroxypyruvate reductase ATHPR1, hydroxypyruvate reductase 0.86 0.34 -0.32
37 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.86 0.31 -0.31
38 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.86 0.32 -0.33
39 AT4G32570 TIFY domain protein 8 TIFY domain protein 8 0.86 0.29 -0.31
40 AT5G52100 Dihydrodipicolinate reductase, bacterial/plant chlororespiration reduction 1 0.86 0.31 -0.32
41 AT1G49010 Duplicated homeodomain-like superfamily protein 0.85 0.32 -0.33
42 AT3G25690 Hydroxyproline-rich glycoprotein family protein Arabidopsis thaliana CHLOROPLAST
UNUSUAL POSITIONING 1, CHLOROPLAST
UNUSUAL POSITIONING 1		 0.85 0.32 -0.31
43 AT1G20870 HSP20-like chaperones superfamily protein 0.85 0.32 -0.31
44 AT1G17220 Translation initiation factor 2, small GTP-binding protein fu-gaeri1 0.85 0.3 -0.32
45 AT3G04340 FtsH extracellular protease family embryo defective 2458 0.85 0.31 -0.31
46 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.85 0.29 -0.29
47 AT1G80030 Molecular chaperone Hsp40/DnaJ family protein 0.85 0.31 -0.32
48 AT4G21190 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1417 0.85 0.31 -0.31
49 AT2G37450 nodulin MtN21 /EamA-like transporter family protein 0.85 0.31 -0.3
50 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.85 0.31 -0.31
51 AT4G15110 cytochrome P450, family 97, subfamily B, polypeptide 3 cytochrome P450, family 97,
subfamily B, polypeptide 3		 0.85 0.32 -0.31
52 AT4G19710 aspartate kinase-homoserine dehydrogenase ii ASPARTATE KINASE-HOMOSERINE
DEHYDROGENASE, aspartate
kinase-homoserine dehydrogenase ii		 0.85 0.32 -0.32
53 AT3G60620 cytidinediphosphate diacylglycerol synthase 5 cytidinediphosphate diacylglycerol
synthase 5		 0.84 0.32 -0.31
54 AT2G27060 Leucine-rich repeat protein kinase family protein 0.84 0.32 -0.31
55 AT4G19985 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.84 0.32 -0.3
56 AT1G22630 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages; Has
87 Blast hits to 86 proteins in 34 species: Archae - 0;
Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.84 0.32 -0.33
57 AT5G10470 kinesin like protein for actin based chloroplast movement 1 kinesin like protein for actin
based chloroplast movement 1,
KINESIN CDKA;1 ASSOCIATED 1		 0.84 0.32 -0.31
58 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.84 0.3 -0.31
59 AT4G00370 Major facilitator superfamily protein ANTR2, anion transporter 2 0.84 0.31 -0.32
60 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.84 0.32 -0.31
61 AT1G50450 Saccharopine dehydrogenase 0.84 0.31 -0.32
62 AT5G64380 Inositol monophosphatase family protein 0.84 0.32 -0.32
63 AT3G48200 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to
148 proteins in 42 species: Archae - 0; Bacteria - 118;
Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other
Eukaryotes - 44 (source: NCBI BLink).		 0.84 0.32 -0.32
64 AT1G27480 alpha/beta-Hydrolases superfamily protein 0.84 0.3 -0.34
65 AT1G60600 UbiA prenyltransferase family protein ABERRANT CHLOROPLAST DEVELOPMENT 4 0.83 0.32 -0.31
66 AT3G51870 Mitochondrial substrate carrier family protein 0.83 0.31 -0.31
67 AT1G73090 unknown protein; Has 28 Blast hits to 28 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.83 0.31 -0.32
68 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.83 0.29 -0.32
69 AT1G16720 high chlorophyll fluorescence phenotype 173 high chlorophyll fluorescence
phenotype 173		 0.83 0.31 -0.31
70 AT2G17240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G24506.1); Has 2795
Blast hits to 943 proteins in 155 species: Archae - 0;
Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153;
Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink).		 0.83 0.31 -0.31
71 AT2G35155 Trypsin family protein 0.83 0.32 -0.32
72 AT4G26060 Ribosomal protein L18ae family -0.82 0.34 -0.3
73 AT1G53580 glyoxalase II 3 ETHE1-LIKE, GLYOXALASE 2-3,
glyoxalase II 3		 -0.8 0.33 -0.31
74 AT1G79680 WALL ASSOCIATED KINASE (WAK)-LIKE 10 ATWAKL10, WALL ASSOCIATED KINASE
(WAK)-LIKE 10		 -0.79 0.32 -0.34
75 AT5G57910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.79 0.29 -0.32
76 AT5G11230 Nucleotide-sugar transporter family protein -0.78 0.3 -0.31
77 AT2G06255 ELF4-like 3 ELF4-like 3 -0.78 0.31 -0.32
78 AT2G39725 LYR family of Fe/S cluster biogenesis protein -0.78 0.29 -0.33
79 AT5G67310 cytochrome P450, family 81, subfamily G, polypeptide 1 cytochrome P450, family 81,
subfamily G, polypeptide 1		 -0.78 0.32 -0.31
80 AT1G66760 MATE efflux family protein -0.78 0.31 -0.32
81 AT5G59510 ROTUNDIFOLIA like 5 DEVIL 18, ROTUNDIFOLIA like 5 -0.77 0.35 -0.35
82 AT5G17490 RGA-like protein 3 AtRGL3, RGA-like protein 3 -0.77 0.32 -0.33
83 AT2G39420 alpha/beta-Hydrolases superfamily protein -0.77 0.33 -0.31
84 AT1G23440 Peptidase C15, pyroglutamyl peptidase I-like -0.77 0.31 -0.31
85 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.76 0.32 -0.31
86 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.76 0.3 -0.32
87 AT3G19260 LAG1 homologue 2 LONGEVITY ASSURANCE GENE1 HOMOLOG
2, LAG1 homologue 2		 -0.76 0.34 -0.33
88 AT5G56150 ubiquitin-conjugating enzyme 30 ubiquitin-conjugating enzyme 30 -0.76 0.29 -0.34
89 AT2G37770 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C9, Chloroplastic aldo-keto
reductase		 -0.76 0.35 -0.3
90 AT3G50260 cooperatively regulated by ethylene and jasmonate 1 ATERF#011, cooperatively regulated
by ethylene and jasmonate 1, DREB
AND EAR MOTIF PROTEIN 1		 -0.75 0.28 -0.33
91 AT4G07390 Mannose-P-dolichol utilization defect 1 protein -0.75 0.3 -0.31
92 AT3G17860 jasmonate-zim-domain protein 3 JASMONATE-INSENSITIVE 3,
jasmonate-zim-domain protein 3,
TIFY6B		 -0.75 0.31 -0.31
93 AT3G48850 phosphate transporter 3;2 phosphate transporter 3;2 -0.75 0.31 -0.32
94 AT5G63880 SNF7 family protein VPS20.1 -0.75 0.3 -0.3
95 AT1G71190 senescence associated gene 18 senescence associated gene 18 -0.75 0.32 -0.32
96 AT1G31130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in
29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi -
0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 -0.74 0.32 -0.34
97 AT3G11580 AP2/B3-like transcriptional factor family protein -0.74 0.31 -0.31
98 AT3G02360 6-phosphogluconate dehydrogenase family protein -0.74 0.33 -0.36
99 AT3G54300 vesicle-associated membrane protein 727 vesicle-associated membrane
protein 727, VAMP727,
vesicle-associated membrane
protein 727		 -0.74 0.32 -0.32
100 AT3G51450 Calcium-dependent phosphotriesterase superfamily protein -0.74 0.33 -0.34
101 AT4G36830 GNS1/SUR4 membrane protein family HOS3-1 -0.73 0.3 -0.33
102 AT4G31500 cytochrome P450, family 83, subfamily B, polypeptide 1 ALTERED TRYPTOPHAN REGULATION 4,
cytochrome P450, family 83,
subfamily B, polypeptide 1, RED
ELONGATED 1, RUNT 1, SUPERROOT 2		 -0.73 0.34 -0.33
103 AT3G61980 serine protease inhibitor, Kazal-type family protein -0.73 0.31 -0.32
104 AT4G27320 Adenine nucleotide alpha hydrolases-like superfamily
protein		 ATPHOS34, PHOS34 -0.73 0.31 -0.3
105 AT1G71170 6-phosphogluconate dehydrogenase family protein -0.73 0.31 -0.33
106 AT1G52140 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits
to 114 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.3 -0.33
107 AT5G61010 exocyst subunit exo70 family protein E2 exocyst subunit exo70 family
protein E2, exocyst subunit exo70
family protein E2		 -0.72 0.31 -0.31
108 AT5G13320 Auxin-responsive GH3 family protein GH3-LIKE DEFENSE GENE 1, GRETCHEN
HAGEN 3.12, AVRPPHB SUSCEPTIBLE 3,
HOPW1-1-INTERACTING 3		 -0.72 0.3 -0.3
109 AT1G17190 glutathione S-transferase tau 26 glutathione S-transferase tau 26,
glutathione S-transferase tau 26		 -0.72 0.32 -0.33
110 AT1G62660 Glycosyl hydrolases family 32 protein -0.72 0.33 -0.3
111 AT4G35110 Arabidopsis phospholipase-like protein (PEARLI 4) family -0.72 0.34 -0.29
112 AT3G45130 lanosterol synthase 1 lanosterol synthase 1 -0.71 0.32 -0.31
113 AT1G01730 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 42 Blast hits to 42 proteins
in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi
- 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.71 0.31 -0.33
114 AT2G47520 Integrase-type DNA-binding superfamily protein Arabidopsis thaliana ethylene
response factor 71, ethylene
response factor 71, HYPOXIA
RESPONSIVE ERF (ETHYLENE RESPONSE
FACTOR) 2		 -0.71 0.32 -0.31
115 AT1G22180 Sec14p-like phosphatidylinositol transfer family protein -0.71 0.29 -0.31
116 AT1G35910 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
D		 -0.71 0.29 -0.32
117 AT2G47470 thioredoxin family protein ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 11, PDI-LIKE
2-1, MATERNAL EFFECT EMBRYO ARREST
30, PROTEIN DISULFIDE ISOMERASE
11, UNFERTILIZED EMBRYO SAC 5		 -0.71 0.32 -0.33
118 AT3G04060 NAC domain containing protein 46 NAC domain containing protein 46,
NAC domain containing protein 46		 -0.71 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
119 C0241 Stigmasterol 3-O-β-D-glucoside - Stigmasterol 3-O-β-D-glucoside - -0.81 0.5 -0.48 C0241