AT4G34430 : SWITCH/SUCROSE NONFERMENTING 3D
Query Information
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AGICode AT4G34430
Description DNA-binding family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G34430 DNA-binding family protein SWITCH/SUCROSE NONFERMENTING 3D,
CHB3		 1 0.3 -0.31
2 AT4G35800 RNA polymerase II large subunit RNA polymerase II large subunit,
RNA POLYMERASE II LARGE SUBUNIT,
RNA_POL_II_LSRNA_POL_II_LS, RNA
POLYMERASE II LARGE SUBUNIT		 0.77 0.32 -0.3
3 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 0.7 0.33 -0.33
4 AT1G01960 SEC7-like guanine nucleotide exchange family protein embryo sac development arrest 10 0.7 0.32 -0.31
5 AT4G29620 Cytidine/deoxycytidylate deaminase family protein 0.7 0.31 -0.33
6 AT4G00660 RNAhelicase-like 8 ATRH8, RNAhelicase-like 8 0.7 0.31 -0.31
7 AT5G01400 HEAT repeat-containing protein ENHANCED SILENCING PHENOTYPE 4 0.69 0.31 -0.3
8 AT3G52890 KCBP-interacting protein kinase KCBP-interacting protein kinase 0.66 0.32 -0.32
9 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 0.66 0.33 -0.32
10 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.66 0.32 -0.31
11 AT2G16485 nucleic acid binding;zinc ion binding;DNA binding 0.66 0.35 -0.32
12 AT5G53440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.65 0.32 -0.32
13 AT2G47980 sister-chromatid cohesion protein 3 SISTER-CHROMATID COHESION PROTEIN
3, sister-chromatid cohesion
protein 3		 0.65 0.31 -0.32
14 AT5G11040 TRS120 AtTRS120, TRS120 0.64 0.3 -0.31
15 AT4G32760 ENTH/VHS/GAT family protein 0.64 0.34 -0.31
16 AT3G54670 Structural maintenance of chromosomes (SMC) family protein ATSMC1, STRUCTURAL MAINTENANCE OF
CHROMOSOMES 1, TITAN8		 0.64 0.33 -0.32
17 AT2G32910 DCD (Development and Cell Death) domain protein 0.64 0.32 -0.32
18 AT1G09000 NPK1-related protein kinase 1 NPK1-related protein kinase 1, MAP
KINASE KINASE KINASE 1,
NPK1-related protein kinase 1		 0.63 0.32 -0.32
19 AT2G39705 ROTUNDIFOLIA like 8 DEVIL 11, ROTUNDIFOLIA like 8 0.63 0.33 -0.32
20 AT3G58290 TRAF-like superfamily protein -0.63 0.33 -0.35
21 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.62 0.33 -0.32
22 AT1G33680 KH domain-containing protein 0.62 0.29 -0.34
23 AT3G06940 transposable element gene 0.62 0.32 -0.33
24 AT2G47120 NAD(P)-binding Rossmann-fold superfamily protein -0.62 0.31 -0.33
25 AT2G02160 CCCH-type zinc finger family protein 0.62 0.32 -0.31
26 AT2G18915 LOV KELCH protein 2 ADAGIO 2, LOV KELCH protein 2 0.61 0.31 -0.32
27 AT2G39320 Cysteine proteinases superfamily protein -0.61 0.34 -0.34
28 AT5G60100 pseudo-response regulator 3 pseudo-response regulator 3,
pseudo-response regulator 3		 0.61 0.31 -0.34
29 AT3G10650 BEST Arabidopsis thaliana protein match is:
nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast
hits to 31782 proteins in 2093 species: Archae - 202;
Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants -
1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI
BLink).		 AtNUP1, NUP1 0.61 0.31 -0.33
30 AT5G23630 phosphate deficiency response 2 MALE GAMETOGENESIS IMPAIRED
ANTHERS, phosphate deficiency
response 2, PI DEFICIENCY RESPONSE
2		 0.61 0.32 -0.32
31 AT2G39480 P-glycoprotein 6 ATP-binding cassette B6,
P-glycoprotein 6		 0.61 0.31 -0.32
32 AT1G30020 Protein of unknown function, DUF538 0.61 0.32 -0.3
33 AT4G04550 transposable element gene 0.6 0.28 -0.31
34 AT1G16460 rhodanese homologue 2 ARABIDOPSIS THALIANA
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
SULFURTRANSFERASE 2,
SULFURTRANSFERASE 2		 -0.6 0.31 -0.32
35 AT3G42310 unknown protein; Has 66 Blast hits to 66 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0;
Plants - 18; Viruses - 31; Other Eukaryotes - 5 (source:
NCBI BLink).		 0.6 0.33 -0.31
36 AT2G05980 transposable element gene 0.6 0.31 -0.31
37 AT5G24320 Transducin/WD40 repeat-like superfamily protein 0.6 0.31 -0.3
38 AT1G73440 calmodulin-related -0.59 0.32 -0.3
39 AT1G20050 C-8,7 sterol isomerase HYDRA1 -0.59 0.34 -0.33
40 AT5G20370 serine-rich protein-related -0.59 0.29 -0.31
41 AT3G42250 transposable element gene -0.59 0.3 -0.35
42 AT1G15920 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.59 0.32 -0.32
43 AT4G10280 RmlC-like cupins superfamily protein -0.59 0.3 -0.32
44 AT1G71010 FORMS APLOID AND BINUCLEATE CELLS 1C FORMS APLOID AND BINUCLEATE CELLS
1C		 0.59 0.32 -0.29
45 AT3G06010 Homeotic gene regulator ATCHR12 0.58 0.33 -0.34
46 AT4G39756 Galactose oxidase/kelch repeat superfamily protein -0.58 0.31 -0.3
47 AT3G52640 Zn-dependent exopeptidases superfamily protein 0.58 0.31 -0.31
48 AT5G24550 beta glucosidase 32 beta glucosidase 32 -0.58 0.33 -0.32
49 AT2G46400 WRKY DNA-binding protein 46 WRKY DNA-BINDING PROTEIN 46, WRKY
DNA-binding protein 46		 -0.57 0.33 -0.3
50 AT1G71800 cleavage stimulating factor 64 cleavage stimulating factor 64 0.57 0.31 -0.32
51 AT1G30473 Heavy metal transport/detoxification superfamily protein -0.57 0.34 -0.31
52 AT2G45040 Matrixin family protein -0.57 0.32 -0.32
53 AT1G71760 unknown protein; Has 92 Blast hits to 92 proteins in 41
species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source:
NCBI BLink).		 -0.57 0.31 -0.32
54 AT1G63290 Aldolase-type TIM barrel family protein -0.57 0.32 -0.31
55 AT1G24210 Paired amphipathic helix (PAH2) superfamily protein -0.57 0.32 -0.29
56 AT2G17940 Plant protein of unknown function (DUF827) 0.56 0.32 -0.31
57 AT4G10920 transcriptional coactivator p15 (PC4) family protein (KELP) KELP -0.56 0.31 -0.32
58 AT2G44000 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.56 0.32 -0.34
59 AT1G05960 ARM repeat superfamily protein 0.56 0.34 -0.29
60 AT1G58390 Disease resistance protein (CC-NBS-LRR class) family -0.55 0.32 -0.33
61 AT5G60110 pumilio 18 pumilio 18, pumilio 18 0.55 0.32 -0.31
62 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.55 0.33 -0.33
63 AT2G31970 DNA repair-recombination protein (RAD50) ATRAD50, RAD50 0.54 0.32 -0.33
64 AT4G20270 Leucine-rich receptor-like protein kinase family protein BARELY ANY MERISTEM 3 0.54 0.31 -0.31
65 AT5G63950 chromatin remodeling 24 chromatin remodeling 24 0.54 0.33 -0.3
66 AT4G17785 myb domain protein 39 myb domain protein 39 -0.54 0.32 -0.32
67 AT1G05800 alpha/beta-Hydrolases superfamily protein DONGLE 0.54 0.3 -0.3
68 AT5G60130 AP2/B3-like transcriptional factor family protein -0.54 0.32 -0.31
69 AT3G24360 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.54 0.33 -0.32
70 AT4G04170 transposable element gene -0.54 0.31 -0.32
71 AT3G03570 Protein of unknown function (DUF3550/UPF0682) 0.54 0.32 -0.29
72 AT4G31770 debranching enzyme 1 ARABIDOPSIS THALIANA DEBRANCHING
ENZYME 1, debranching enzyme 1		 -0.54 0.32 -0.3
73 AT2G36910 ATP binding cassette subfamily B1 ATP-binding cassette B1,
ARABIDOPSIS THALIANA P
GLYCOPROTEIN1, P-GLYCOPROTEIN 1		 0.54 0.32 -0.29
74 AT4G23330 BEST Arabidopsis thaliana protein match is: eukaryotic
translation initiation factor 3A (TAIR:AT4G11420.1); Has 63
Blast hits to 55 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.54 0.31 -0.32
75 AT2G07320 transposable element gene 0.54 0.29 -0.3
76 AT2G06630 transposable element gene 0.53 0.3 -0.31
77 AT5G23790 galactinol synthase 5 galactinol synthase 5, galactinol
synthase 5		 0.53 0.32 -0.3
78 AT4G38560 Arabidopsis phospholipase-like protein (PEARLI 4) family -0.53 0.31 -0.33
79 AT1G22460 O-fucosyltransferase family protein -0.53 0.31 -0.32
80 AT1G48820 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.53 0.32 -0.31
81 AT2G33540 C-terminal domain phosphatase-like 3 ATCPL3, C-terminal domain
phosphatase-like 3		 0.53 0.33 -0.31
82 AT4G03390 STRUBBELIG-receptor family 3 STRUBBELIG-receptor family 3 0.53 0.31 -0.32
83 AT4G28900 transposable element gene -0.53 0.32 -0.32
84 AT5G44880 transposable element gene -0.53 0.32 -0.31
85 AT4G02075 RING/FYVE/PHD zinc finger superfamily protein pitchoun 1 -0.53 0.32 -0.31
86 AT2G04580 transposable element gene -0.52 0.32 -0.32
87 AT4G39490 cytochrome P450, family 96, subfamily A, polypeptide 10 cytochrome P450, family 96,
subfamily A, polypeptide 10		 -0.52 0.33 -0.33
88 AT1G05740 Eukaryotic protein of unknown function (DUF842) -0.52 0.32 -0.33
89 AT5G56330 alpha carbonic anhydrase 8 alpha carbonic anhydrase 8, A.
THALIANA ALPHA CARBONIC ANHYDRASE
8		 -0.52 0.31 -0.32
90 AT4G09300 LisH and RanBPM domains containing protein -0.51 0.31 -0.33
91 AT2G04675 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.51 0.33 -0.33
92 AT5G28600 transposable element gene -0.51 0.32 -0.33
93 AT5G61600 ethylene response factor 104 ethylene response factor 104 -0.51 0.31 -0.3
94 AT1G80740 chromomethylase 1 chromomethylase 1, DNA
METHYLTRANSFERASE 4		 -0.51 0.3 -0.33
95 AT5G27830 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
response to oxidative stress; LOCATED IN: endomembrane
system; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Folate receptor, conserved region (InterPro:IPR018143); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.51 0.3 -0.31
96 AT5G41400 RING/U-box superfamily protein -0.51 0.3 -0.29
97 AT2G05820 transposable element gene -0.51 0.32 -0.31
98 AT1G35740 pseudogene, similar to putative beta-1,3-glucan synthase,
blastp match of 57% identity and 2.1e-14 P-value to
GP|23503034|gb|AAK49452.2|AF304372_1|AF304372 putative
beta-1,3-glucan synthase {Nicotiana alata}		 -0.5 0.31 -0.31
99 AT3G20030 F-box and associated interaction domains-containing protein -0.5 0.31 -0.32
100 AT1G22010 unknown protein; Has 12 Blast hits to 12 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.5 0.35 -0.31
101 AT3G45480 RING/U-box protein with C6HC-type zinc finger -0.49 0.32 -0.31
102 AT2G14610 pathogenesis-related gene 1 PATHOGENESIS-RELATED GENE 1,
PATHOGENESIS-RELATED GENE 1,
pathogenesis-related gene 1		 -0.49 0.31 -0.32
103 ATMG00140 hypothetical protein ORF167 -0.49 0.3 -0.32
104 AT5G39785 Protein of unknown function (DUF1666) -0.49 0.3 -0.32
105 AT3G45220 Serine protease inhibitor (SERPIN) family protein -0.48 0.32 -0.31
106 AT1G67470 Protein kinase superfamily protein -0.48 0.33 -0.33
107 AT1G35880 unknown protein; Has 251 Blast hits to 234 proteins in 66
species: Archae - 2; Bacteria - 48; Metazoa - 87; Fungi -
9; Plants - 70; Viruses - 0; Other Eukaryotes - 35 (source:
NCBI BLink).		 -0.48 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
108 C0020 1-Aminocyclopropane-1-carboxylic acid - 1-Aminocyclopropane-1-carboxylate jasmonoyl-amino acid conjugates biosynthesis I,
ethylene biosynthesis I (plants),
methionine salvage pathway 		0.57 0.45 -0.43 C0020