AT4G32520 : SERINE HYDROXYMETHYLTRANSFERASE 3
Query Information
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AGICode AT4G32520
Description serine hydroxymethyltransferase 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G32520 serine hydroxymethyltransferase 3 SERINE HYDROXYMETHYLTRANSFERASE 3,
serine hydroxymethyltransferase 3		 1 0.31 -0.35
2 AT1G54770 Fcf2 pre-rRNA processing protein 0.82 0.31 -0.32
3 AT5G26360 TCP-1/cpn60 chaperonin family protein 0.79 0.32 -0.33
4 AT5G19820 ARM repeat superfamily protein embryo defective 2734 0.79 0.29 -0.31
5 AT1G12270 stress-inducible protein, putative Hop1 0.79 0.32 -0.32
6 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 0.78 0.3 -0.32
7 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.78 0.31 -0.31
8 AT5G19300 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), Protein of unknown
function DUF171 (InterPro:IPR003750); Has 3649 Blast hits
to 1964 proteins in 291 species: Archae - 113; Bacteria -
121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses -
4; Other Eukaryotes - 1703 (source: NCBI BLink).		 0.78 0.32 -0.31
9 AT2G39795 Mitochondrial glycoprotein family protein 0.77 0.32 -0.31
10 AT3G15000 cobalt ion binding 0.77 0.29 -0.31
11 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 -0.76 0.31 -0.3
12 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 0.76 0.32 -0.3
13 AT5G18820 TCP-1/cpn60 chaperonin family protein chaperonin-60alpha2, embryo
defective 3007		 0.76 0.31 -0.33
14 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein 0.76 0.34 -0.32
15 AT2G34040 Apoptosis inhibitory protein 5 (API5) 0.75 0.31 -0.34
16 AT3G60180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.75 0.32 -0.31
17 AT4G13850 glycine-rich RNA-binding protein 2 GLYCINE-RICH RNA-BINDING PROTEIN
2, glycine-rich RNA-binding
protein 2, glycine rich protein 2		 0.75 0.32 -0.31
18 AT3G13672 TRAF-like superfamily protein -0.75 0.31 -0.31
19 AT5G63800 Glycosyl hydrolase family 35 protein beta-galactosidase 6,
MUCILAGE-MODIFIED 2		 -0.74 0.33 -0.32
20 AT2G40420 Transmembrane amino acid transporter family protein -0.74 0.31 -0.33
21 AT4G05440 temperature sensing protein-related embryo sac development arrest 35 0.74 0.3 -0.33
22 AT1G20220 Alba DNA/RNA-binding protein 0.74 0.3 -0.34
23 AT1G55150 DEA(D/H)-box RNA helicase family protein 0.74 0.31 -0.31
24 AT1G28260 Telomerase activating protein Est1 -0.74 0.34 -0.33
25 AT5G66540 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA
processing; LOCATED IN: cytosol, nucleolus, nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12
growth stages; CONTAINS InterPro DOMAIN/s: U3 small
nucleolar ribonucleoprotein complex, subunit Mpp10p
(InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 0.73 0.3 -0.29
26 AT1G06560 NOL1/NOP2/sun family protein 0.73 0.3 -0.32
27 AT5G48470 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.73 0.31 -0.33
28 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 -0.73 0.33 -0.31
29 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11		 -0.72 0.32 -0.34
30 AT5G23250 Succinyl-CoA ligase, alpha subunit 0.72 0.33 -0.33
31 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 0.72 0.28 -0.32
32 AT5G67630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.72 0.33 -0.33
33 AT5G05220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.71 0.32 -0.32
34 AT2G15000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G34265.2); Has 70 Blast
hits to 70 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.71 0.33 -0.3
35 AT2G35680 Phosphotyrosine protein phosphatases superfamily protein -0.71 0.31 -0.33
36 AT2G27100 C2H2 zinc-finger protein SERRATE (SE) SERRATE 0.71 0.32 -0.34
37 AT5G43010 regulatory particle triple-A ATPase 4A regulatory particle triple-A
ATPase 4A		 0.7 0.32 -0.32
38 AT1G24310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 13 growth stages; Has 2922 Blast hits to 2454
proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa
- 1043; Fungi - 654; Plants - 388; Viruses - 11; Other
Eukaryotes - 769 (source: NCBI BLink).		 0.7 0.31 -0.28
39 AT2G22660 Protein of unknown function (duplicated DUF1399) -0.69 0.31 -0.31
40 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein -0.68 0.3 -0.28
41 AT3G07350 Protein of unknown function (DUF506) -0.68 0.32 -0.32
42 AT2G14080 Disease resistance protein (TIR-NBS-LRR class) family -0.67 0.32 -0.33
43 AT3G54390 sequence-specific DNA binding transcription factors -0.67 0.33 -0.31
44 AT5G22460 alpha/beta-Hydrolases superfamily protein -0.67 0.32 -0.32
45 AT4G05100 myb domain protein 74 myb domain protein 74, myb domain
protein 74		 -0.66 0.31 -0.31
46 AT2G29380 highly ABA-induced PP2C gene 3 highly ABA-induced PP2C gene 3 -0.65 0.31 -0.33
47 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator		 -0.65 0.33 -0.31
48 AT5G07250 RHOMBOID-like protein 3 RHOMBOID-like protein 3,
RHOMBOID-like protein 3		 -0.64 0.33 -0.31
49 AT1G02700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49
proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa -
10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink).		 -0.63 0.33 -0.29
50 AT2G34840 Coatomer epsilon subunit -0.63 0.3 -0.3
51 AT3G03150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast
hits to 39 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.31 -0.31
52 AT5G44310 Late embryogenesis abundant protein (LEA) family protein -0.63 0.33 -0.31
53 AT2G25450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.63 0.31 -0.31
54 AT4G26490 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.63 0.3 -0.33
55 AT5G53710 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.62 0.31 -0.31
56 AT5G03230 Protein of unknown function, DUF584 -0.62 0.28 -0.32
57 AT1G15330 Cystathionine beta-synthase (CBS) protein -0.62 0.32 -0.33
58 AT2G18670 RING/U-box superfamily protein -0.62 0.34 -0.29
59 AT1G69490 NAC-like, activated by AP3/PI Arabidopsis NAC domain containing
protein 29, NAC-LIKE, ACTIVATED BY
AP3/PI, NAC-like, activated by
AP3/PI		 -0.61 0.32 -0.32
60 AT1G64620 Dof-type zinc finger DNA-binding family protein -0.6 0.32 -0.32
61 AT5G14510 ARM repeat superfamily protein -0.6 0.31 -0.32
62 AT2G20670 Protein of unknown function (DUF506) -0.59 0.3 -0.32
63 AT2G44850 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0565
(InterPro:IPR018881); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G45380.1); Has 138 Blast
hits to 138 proteins in 53 species: Archae - 0; Bacteria -
0; Metazoa - 73; Fungi - 0; Plants - 62; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 -0.59 0.31 -0.32
64 AT2G46690 SAUR-like auxin-responsive protein family -0.59 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
65 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine -0.7 0.43 -0.43 C0030
66 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II -0.64 0.31 -0.3 C0097
67 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		-0.63 0.3 -0.33 C0137
68 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		-0.62 0.31 -0.3 C0052