AT4G30200 : vernalization5/VIN3-like 1
Query Information
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AGICode AT4G30200
Description vernalization5/VIN3-like
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G30200 vernalization5/VIN3-like vernalization5/VIN3-like 1,
VIN3-Like 2		 1 0.32 -0.32
2 AT5G59740 UDP-N-acetylglucosamine (UAA) transporter family 0.65 0.3 -0.32
3 AT1G15330 Cystathionine beta-synthase (CBS) protein 0.65 0.33 -0.32
4 AT3G51560 Disease resistance protein (TIR-NBS-LRR class) family -0.64 0.34 -0.31
5 AT3G60030 squamosa promoter-binding protein-like 12 squamosa promoter-binding
protein-like 12		 0.63 0.31 -0.31
6 AT4G40020 Myosin heavy chain-related protein -0.62 0.32 -0.31
7 AT3G58790 galacturonosyltransferase 15 galacturonosyltransferase 15 0.62 0.33 -0.31
8 AT1G15790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits
to 94 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.33 -0.31
9 AT3G60540 Preprotein translocase Sec, Sec61-beta subunit protein -0.61 0.31 -0.32
10 AT5G25990 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast; BEST
Arabidopsis thaliana protein match is: Core-2/I-branching
beta-1,6-N-acetylglucosaminyltransferase family protein
(TAIR:AT5G25970.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.61 0.31 -0.32
11 AT3G54420 homolog of carrot EP3-3 chitinase CHITINASE CLASS IV, homolog of
carrot EP3-3 chitinase, CHIV,
homolog of carrot EP3-3 chitinase		 -0.6 0.32 -0.31
12 AT1G71040 Cupredoxin superfamily protein Low Phosphate Root2 -0.6 0.31 -0.3
13 AT1G05600 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 3101 0.6 0.32 -0.31
14 AT4G38230 calcium-dependent protein kinase 26 ARABIDOPSIS THALIANA
CALCIUM-DEPENDENT PROTEIN KINASE
26, calcium-dependent protein
kinase 26		 -0.59 0.32 -0.31
15 AT5G67440 Phototropic-responsive NPH3 family protein MAB4/ENP/NPY1-LIKE 2, NAKED PINS
IN YUC MUTANTS 3		 0.59 0.3 -0.3
16 AT3G47700 RINT-1 / TIP-1 family maigo2 -0.59 0.3 -0.32
17 AT5G14430 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.59 0.3 -0.33
18 AT1G31940 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.33 -0.32
19 AT1G02420 Pentatricopeptide repeat (PPR) superfamily protein 0.59 0.31 -0.31
20 AT1G70000 myb-like transcription factor family protein -0.59 0.31 -0.31
21 AT5G43770 proline-rich family protein 0.59 0.33 -0.3
22 AT3G04590 AT hook motif DNA-binding family protein -0.58 0.3 -0.33
23 AT5G46860 Syntaxin/t-SNARE family protein ARABIDOPSIS THALIANA SYNTAXIN OF
PLANTS 22, ARABIDOPSIS THALIANA
VACUOLAR MORPHOLOGY 3, SHOOT
GRAVITROPISM 3, SYNTAXIN OF PLANTS
22, VACUOLAR MORPHOLOGY 3		 -0.58 0.31 -0.32
24 AT2G20142 Toll-Interleukin-Resistance (TIR) domain family protein -0.58 0.3 -0.32
25 AT2G45520 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
260 Blast hits to 238 proteins in 75 species: Archae - 0;
Bacteria - 6; Metazoa - 94; Fungi - 40; Plants - 38;
Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).		 -0.57 0.33 -0.34
26 AT3G52180 dual specificity protein phosphatase (DsPTP1) family
protein		 ATPTPKIS1, ATSEX4,
DUAL-SPECIFICITY PROTEIN
PHOSPHATASE 4, STARCH-EXCESS 4		 -0.57 0.32 -0.34
27 AT1G08450 calreticulin 3 A. thaliana calreticulin 3,
calreticulin 3, EMS-MUTAGENIZED
BRI1 SUPPRESSOR 2, PRIORITY IN
SWEET LIFE 1		 -0.57 0.32 -0.32
28 AT5G46470 disease resistance protein (TIR-NBS-LRR class) family RESISTANT TO P. SYRINGAE 6 -0.57 0.33 -0.32
29 AT5G40260 Nodulin MtN3 family protein AtSWEET8, SWEET8 0.57 0.32 -0.31
30 AT1G75510 Transcription initiation factor IIF, beta subunit -0.57 0.31 -0.3
31 AT5G15250 FTSH protease 6 ATFTSH6, FTSH protease 6 -0.56 0.31 -0.29
32 AT2G28270 Cysteine/Histidine-rich C1 domain family protein 0.56 0.35 -0.32
33 AT1G06710 Tetratricopeptide repeat (TPR)-like superfamily protein -0.56 0.3 -0.31
34 AT3G59120 Cysteine/Histidine-rich C1 domain family protein 0.56 0.3 -0.3
35 AT5G56900 CwfJ-like family protein / zinc finger (CCCH-type) family
protein		 0.56 0.3 -0.31
36 AT5G01440 BEST Arabidopsis thaliana protein match is: Insulinase
(Peptidase family M16) family protein (TAIR:AT1G06900.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.56 0.31 -0.33
37 AT2G23680 Cold acclimation protein WCOR413 family -0.55 0.32 -0.31
38 AT3G28580 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.55 0.31 -0.31
39 AT3G46280 protein kinase-related -0.55 0.34 -0.31
40 AT2G44590 DYNAMIN-like 1D DYNAMIN-like 1D, DYNAMIN-like 1D 0.55 0.33 -0.33
41 AT2G14540 serpin 2 ATSRP2, serpin 2 0.55 0.34 -0.35
42 AT5G05860 UDP-glucosyl transferase 76C2 UDP-glucosyl transferase 76C2 0.55 0.31 -0.33
43 AT2G18580 transposable element gene -0.55 0.34 -0.31
44 AT5G52230 methyl-CPG-binding domain protein 13 methyl-CPG-binding domain protein
13		 0.55 0.3 -0.32
45 AT1G08210 Eukaryotic aspartyl protease family protein 0.55 0.32 -0.32
46 AT5G57670 Protein kinase superfamily protein 0.55 0.3 -0.31
47 AT2G01800 COP1-interacting protein-related -0.54 0.31 -0.33
48 AT1G08960 cation exchanger 11 CATION EXCHANGER 11, Arabidopsis
thaliana cation calcium exchanger
5, cation exchanger 11, cation
calcium exchanger 5		 -0.54 0.32 -0.33
49 AT4G10070 KH domain-containing protein 0.54 0.33 -0.34
50 AT1G77780 Glycosyl hydrolase superfamily protein -0.54 0.33 -0.3
51 AT1G13740 ABI five binding protein 2 ABI five binding protein 2 0.54 0.32 -0.3
52 AT2G13270 transposable element gene 0.54 0.32 -0.31
53 AT3G43950 Protein kinase superfamily protein -0.54 0.3 -0.32
54 AT5G66660 Protein of unknown function (DUF677) 0.54 0.29 -0.32
55 AT4G27060 ARM repeat superfamily protein CONVOLUTA, SPIRAL 2, TORTIFOLIA 1 0.54 0.31 -0.3
56 AT5G53030 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF688 (InterPro:IPR007789); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.53 0.3 -0.32
57 AT3G24510 Defensin-like (DEFL) family protein 0.53 0.33 -0.33
58 AT3G04750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.53 0.32 -0.32
59 AT3G53790 TRF-like 4 TRF-like 4 -0.53 0.31 -0.31
60 AT2G03520 ureide permease 4 ureide permease 4, ureide permease
4		 0.53 0.33 -0.33
61 AT3G20650 mRNA capping enzyme family protein -0.53 0.31 -0.31
62 AT3G54320 Integrase-type DNA-binding superfamily protein ACTIVATOR OF SPO(MIN)::LUC1,
ATWRI1, WRINKLED, WRINKLED 1		 0.53 0.34 -0.33
63 AT1G69240 methyl esterase 15 ARABIDOPSIS THALIANA METHYL
ESTERASE 15, methyl esterase 15,
ROOT HAIR SPECIFIC 9		 0.53 0.33 -0.3
64 AT4G20160 LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has
64917 Blast hits to 39974 proteins in 1949 species: Archae
- 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788;
Plants - 3193; Viruses - 275; Other Eukaryotes - 21353
(source: NCBI BLink).		 0.53 0.32 -0.31
65 AT2G21770 cellulose synthase A9 CESA09, cellulose synthase A9 0.53 0.31 -0.31
66 AT1G22600 Late embryogenesis abundant protein (LEA) family protein 0.53 0.29 -0.31
67 AT5G35920 cytochrome P450, family 79, subfamily A, polypeptide 4
pseudogene		 cytochrome P450, family 79,
subfamily A, polypeptide 4
pseudogene		 -0.53 0.32 -0.31
68 AT5G57100 Nucleotide/sugar transporter family protein 0.52 0.3 -0.32
69 AT4G05370 BCS1 AAA-type ATPase -0.52 0.31 -0.33
70 AT4G24600 unknown protein; Has 10 Blast hits to 10 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.52 0.3 -0.34
71 AT4G11020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G23870.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.52 0.3 -0.32
72 AT5G55090 mitogen-activated protein kinase kinase kinase 15 mitogen-activated protein kinase
kinase kinase 15		 -0.52 0.31 -0.33
73 AT3G22240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits
to 177 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.52 0.3 -0.33
74 AT1G58470 RNA-binding protein 1 RNA-binding protein 1, RNA-binding
protein 1		 0.52 0.33 -0.31
75 AT1G19250 flavin-dependent monooxygenase 1 flavin-dependent monooxygenase 1 -0.52 0.33 -0.3
76 AT3G20450 B-cell receptor-associated protein 31-like -0.52 0.31 -0.33
77 AT3G22090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G71470.2); Has 12 Blast hits
to 12 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.51 0.31 -0.32
78 AT4G15150 glycine-rich protein -0.51 0.32 -0.32
79 AT3G62080 SNF7 family protein -0.51 0.3 -0.32
80 AT4G11140 cytokinin response factor 1 cytokinin response factor 1 0.51 0.32 -0.31
81 AT1G14340 RNA-binding (RRM/RBD/RNP motifs) family protein -0.51 0.32 -0.31
82 AT5G44910 Toll-Interleukin-Resistance (TIR) domain family protein -0.51 0.32 -0.32
83 AT4G08850 Leucine-rich repeat receptor-like protein kinase family
protein		 -0.51 0.3 -0.33
84 AT5G65490 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: SGT1
(InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.51 0.31 -0.33
85 AT2G02610 Cysteine/Histidine-rich C1 domain family protein -0.51 0.31 -0.32
86 AT1G74810 HCO3- transporter family BOR5 -0.5 0.31 -0.3
87 AT1G48950 C3HC zinc finger-like 0.5 0.31 -0.32
88 AT3G31380 transposable element gene 0.5 0.33 -0.32
89 AT5G38080 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38090.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.5 0.32 -0.3
90 AT4G38560 Arabidopsis phospholipase-like protein (PEARLI 4) family -0.5 0.3 -0.33
91 AT4G23280 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 cysteine-rich RLK (RECEPTOR-like
protein kinase) 20		 -0.5 0.32 -0.31
92 AT1G73805 Calmodulin binding protein-like SAR Deficient 1 -0.5 0.31 -0.34
93 AT4G03450 Ankyrin repeat family protein -0.5 0.32 -0.31
94 AT1G50380 Prolyl oligopeptidase family protein 0.5 0.32 -0.3
95 AT5G29210 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.5 0.32 -0.3
96 AT4G31940 cytochrome P450, family 82, subfamily C, polypeptide 4 cytochrome P450, family 82,
subfamily C, polypeptide 4		 0.5 0.31 -0.34
97 AT1G08050 Zinc finger (C3HC4-type RING finger) family protein -0.5 0.34 -0.32
98 AT5G07720 Galactosyl transferase GMA12/MNN10 family protein 0.49 0.32 -0.31
99 AT4G38620 myb domain protein 4 myb domain protein 4, myb domain
protein 4		 -0.49 0.33 -0.32
100 AT1G69980 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; Has 30 Blast hits to 30 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.49 0.32 -0.33
101 AT1G07300 josephin protein-related -0.49 0.3 -0.31
102 AT5G51810 gibberellin 20 oxidase 2 AT2353, ATGA20OX2, gibberellin 20
oxidase 2		 0.49 0.34 -0.31
103 AT1G28340 receptor like protein 4 receptor like protein 4, receptor
like protein 4		 -0.49 0.3 -0.31
104 AT3G01700 arabinogalactan protein 11 arabinogalactan protein 11,
ARABINOGALACTAN PROTEIN 11		 -0.49 0.31 -0.3
105 AT3G01020 ISCU-like 2 ISCU-LIKE 2, ISCU-like 2 0.49 0.31 -0.32
106 AT2G16730 glycosyl hydrolase family 35 protein beta-galactosidase 13 -0.49 0.34 -0.3
107 AT5G53960 ATP binding;DNA binding;DNA topoisomerase
(ATP-hydrolyzing)s		 0.48 0.32 -0.33
108 AT4G15040 Subtilisin-like serine endopeptidase family protein 0.48 0.31 -0.29
109 AT5G38850 Disease resistance protein (TIR-NBS-LRR class) 0.48 0.33 -0.3
110 AT4G10130 DNAJ heat shock N-terminal domain-containing protein 0.48 0.3 -0.32
111 AT1G64470 Ubiquitin-like superfamily protein 0.48 0.29 -0.33
112 AT1G19510 RAD-like 5 RAD-like 5, RAD-like 5,
RADIALIS-LIKE SANT/MYB 4		 0.48 0.31 -0.29
113 AT3G60780 Protein of unknown function (DUF1442) 0.48 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
114 C0115 Homoserine D,L-Homoserine Homoserine homoserine biosynthesis,
threonine biosynthesis from homoserine,
methionine biosynthesis II 		-0.58 0.34 -0.29 C0115