AT4G29830 : vernalization independence 3
Query Information
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AGICode AT4G29830
Description Transducin/WD40 repeat-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G29830 Transducin/WD40 repeat-like superfamily protein vernalization independence 3 1 0.32 -0.3
2 AT3G43810 calmodulin 7 calmodulin 7 0.84 0.32 -0.31
3 AT2G27720 60S acidic ribosomal protein family 0.83 0.32 -0.34
4 AT3G19760 eukaryotic initiation factor 4A-III eukaryotic initiation factor
4A-III		 0.83 0.3 -0.31
5 AT3G55380 ubiquitin-conjugating enzyme 14 ubiquitin-conjugating enzyme 14 0.83 0.3 -0.32
6 AT3G27080 translocase of outer membrane 20 kDa subunit 3 translocase of outer membrane 20
kDa subunit 3		 0.82 0.32 -0.33
7 AT3G02080 Ribosomal protein S19e family protein 0.82 0.31 -0.33
8 AT1G04690 potassium channel beta subunit 1 potassium channel beta subunit 1,
KV-BETA1		 0.81 0.3 -0.31
9 AT3G51010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24
proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.81 0.32 -0.3
10 AT5G03300 adenosine kinase 2 adenosine kinase 2 0.81 0.32 -0.33
11 AT1G22920 COP9 signalosome 5A ARABIDOPSIS JAB1 HOMOLOG 1, COP9
signalosome 5A, JAB1		 0.8 0.31 -0.31
12 AT3G24740 Protein of unknown function (DUF1644) -0.8 0.3 -0.32
13 AT5G37890 Protein with RING/U-box and TRAF-like domains 0.79 0.32 -0.3
14 AT1G35620 PDI-like 5-2 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 8, PDI-like
5-2, PROTEIN DISULFIDE ISOMERASE
8, PDI-like 5-2		 0.79 0.29 -0.33
15 AT5G25080 Sas10/Utp3/C1D family 0.79 0.31 -0.33
16 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 0.78 0.3 -0.32
17 AT3G52590 ubiquitin extension protein 1 EMBRYO DEFECTIVE 2167,
EARLY-RESPONSIVE TO DEHYDRATION
16, HAPLESS 4, ubiquitin extension
protein 1		 0.78 0.32 -0.29
18 AT4G29390 Ribosomal protein S30 family protein 0.78 0.31 -0.31
19 AT3G46830 RAB GTPase homolog A2C ARABIDOPSIS RAB GTPASE HOMOLOG
A2C, ATRAB11A, RAB GTPase homolog
A2C, RAB GTPASE HOMOLOG A2C, RAB
GTPase homolog A2C		 0.78 0.32 -0.3
20 AT3G49910 Translation protein SH3-like family protein 0.77 0.31 -0.31
21 AT1G71430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 64
Blast hits to 64 proteins in 28 species: Archae - 0;
Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.77 0.33 -0.31
22 AT2G46230 PIN domain-like family protein 0.77 0.32 -0.33
23 AT2G21870 copper ion binding;cobalt ion binding;zinc ion binding MALE GAMETOPHYTE DEFECTIVE 1 0.77 0.3 -0.3
24 AT3G44380 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.77 0.31 -0.32
25 AT3G14270 phosphatidylinositol-4-phosphate 5-kinase family protein FORMS APLOID AND BINUCLEATE CELLS
1B		 -0.77 0.34 -0.32
26 AT4G30010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39
proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.77 0.33 -0.32
27 AT2G42310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits
to 115 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.76 0.32 -0.31
28 AT5G59160 type one serine/threonine protein phosphatase 2 PROTOPORPHYRINOGEN OXIDASE, type
one serine/threonine protein
phosphatase 2		 0.76 0.3 -0.29
29 AT2G34590 Transketolase family protein 0.76 0.33 -0.3
30 AT2G30410 tubulin folding cofactor A (KIESEL) KIESEL, TUBULIN FOLDING FACTOR A 0.76 0.29 -0.31
31 AT2G43640 Signal recognition particle, SRP9/SRP14 subunit 0.76 0.31 -0.33
32 AT1G72170 Domain of unknown function (DUF543) 0.75 0.3 -0.32
33 AT3G25040 endoplasmic reticulum retention defective 2B endoplasmic reticulum retention
defective 2B		 0.75 0.3 -0.32
34 AT1G77800 PHD finger family protein -0.75 0.34 -0.32
35 AT1G73250 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 ACTIVATING TRANSCRIPTION FACTOR 5,
GDP-4-keto-6-deoxymannose-3,5-epim
erase-4-reductase 1		 0.75 0.32 -0.33
36 AT3G55730 myb domain protein 109 myb domain protein 109, myb domain
protein 109		 0.75 0.31 -0.3
37 AT5G51400 PLAC8 family protein 0.75 0.31 -0.31
38 AT2G22475 GRAM domain family protein GL2-EXPRESSION MODULATOR 0.75 0.3 -0.32
39 AT4G39920 C-CAP/cofactor C-like domain-containing protein PORCINO, TUBULIN-FOLDING COFACTOR
C		 0.75 0.33 -0.32
40 AT5G59910 Histone superfamily protein HTB4 0.75 0.31 -0.33
41 AT5G40340 Tudor/PWWP/MBT superfamily protein -0.74 0.32 -0.32
42 AT1G26340 cytochrome B5 isoform A ARABIDOPSIS CYTOCHROME B5 ISOFORM
A, B5 #6, cytochrome B5 isoform A		 0.74 0.3 -0.3
43 AT5G24840 tRNA (guanine-N-7) methyltransferase 0.74 0.32 -0.31
44 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 0.74 0.31 -0.32
45 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 -0.74 0.31 -0.3
46 AT1G53530 Peptidase S24/S26A/S26B/S26C family protein 0.74 0.31 -0.31
47 AT3G51600 lipid transfer protein 5 lipid transfer protein 5 0.74 0.3 -0.31
48 AT2G24970 unknown protein; Has 33 Blast hits to 33 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.74 0.3 -0.3
49 AT2G33845 Nucleic acid-binding, OB-fold-like protein 0.74 0.32 -0.33
50 AT1G09330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
integral to membrane; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF846, eukaryotic
(InterPro:IPR008564); Has 518 Blast hits to 518 proteins in
206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi
- 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107
(source: NCBI BLink).		 0.74 0.29 -0.31
51 AT3G61140 26S proteasome, regulatory subunit Rpn7;Proteasome
component (PCI) domain		 ARABIDOPSIS THALIANA FUSCA 6,
SHAGGY-LIKE KINASE 31,
CONSTITUTIVE PHOTOMORPHOGENIC 11,
COP9 SIGNALOSOME SUBUNIT 1, EMBRYO
DEFECTIVE 78, FUSCA 6, SHAGGY-LIKE
KINASE 31		 0.74 0.32 -0.29
52 AT1G78040 Pollen Ole e 1 allergen and extensin family protein 0.74 0.27 -0.3
53 AT1G10430 protein phosphatase 2A-2 protein phosphatase 2A-2 0.74 0.3 -0.33
54 AT5G15770 glucose-6-phosphate acetyltransferase 1 glucose-6-phosphate
acetyltransferase 1,
glucose-6-phosphate
acetyltransferase 1		 0.73 0.33 -0.31
55 AT2G47320 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.73 0.3 -0.32
56 AT5G55940 Uncharacterised protein family (UPF0172) embryo defective 2731 0.73 0.33 -0.3
57 AT5G57370 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1777 (InterPro:IPR013957); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.73 0.32 -0.31
58 AT5G07960 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0139
(InterPro:IPR005351); Has 193 Blast hits to 193 proteins in
75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi
- 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 0.73 0.32 -0.31
59 AT3G15710 Peptidase S24/S26A/S26B/S26C family protein 0.73 0.31 -0.32
60 AT2G03140 alpha/beta-Hydrolases superfamily protein -0.72 0.32 -0.31
61 AT1G27310 nuclear transport factor 2A nuclear transport factor 2A 0.72 0.34 -0.32
62 AT2G30620 winged-helix DNA-binding transcription factor family
protein		 0.72 0.3 -0.31
63 AT1G34350 unknown protein; Has 192 Blast hits to 192 proteins in 79
species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi -
0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source:
NCBI BLink).		 0.72 0.3 -0.31
64 AT2G19760 profilin 1 PROFILIN 1, profilin 1 0.72 0.31 -0.31
65 AT1G61740 Sulfite exporter TauE/SafE family protein 0.72 0.32 -0.29
66 AT2G30060 Pleckstrin homology (PH) domain superfamily protein 0.72 0.3 -0.32
67 AT5G06660 Protein of unknown function DUF106, transmembrane 0.72 0.3 -0.32
68 AT2G39900 GATA type zinc finger transcription factor family protein WLIM2a 0.72 0.31 -0.32
69 AT5G56130 Transducin/WD40 repeat-like superfamily protein AtTEX1, TEX1, THO3 0.71 0.31 -0.32
70 AT4G32620 Enhancer of polycomb-like transcription factor protein -0.71 0.32 -0.31
71 AT4G30480 Tetratricopeptide repeat (TPR)-like superfamily protein AtTPR1, tetratricopeptide repeat 1 0.71 0.31 -0.32
72 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.71 0.31 -0.31
73 AT1G50410 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.71 0.31 -0.3
74 AT2G44360 unknown protein; Has 23 Blast hits to 23 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.33 -0.32
75 AT1G02080 transcription regulators -0.71 0.32 -0.31
76 AT5G41950 Tetratricopeptide repeat (TPR)-like superfamily protein 0.71 0.33 -0.32
77 AT4G22720 Actin-like ATPase superfamily protein 0.71 0.31 -0.31
78 AT1G05430 unknown protein; Has 31 Blast hits to 31 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.29 -0.31
79 AT2G24765 ADP-ribosylation factor 3 ADP-ribosylation factor 3,
ARF-LIKE 1, ARF-LIKE 1		 0.71 0.31 -0.31
80 AT5G54730 homolog of yeast autophagy 18 (ATG18) F ARABIDOPSIS THALIANA HOMOLOG OF
YEAST AUTOPHAGY 18 (ATG18) F,
homolog of yeast autophagy 18
(ATG18) F, homolog of yeast
autophagy 18 (ATG18) F		 -0.71 0.31 -0.31
81 AT1G09910 Rhamnogalacturonate lyase family protein -0.71 0.32 -0.31
82 AT1G48090 calcium-dependent lipid-binding family protein -0.71 0.3 -0.31
83 AT4G29790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits
to 357 proteins in 124 species: Archae - 0; Bacteria - 74;
Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other
Eukaryotes - 190 (source: NCBI BLink).		 -0.7 0.31 -0.32
84 AT5G35560 DENN (AEX-3) domain-containing protein -0.7 0.3 -0.31
85 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 -0.7 0.31 -0.32
86 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 -0.69 0.32 -0.29
87 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.69 0.32 -0.31
88 AT2G25850 poly(A) polymerase 2 poly(A) polymerase 2 -0.68 0.33 -0.31
89 AT1G24330 ARM repeat superfamily protein -0.68 0.32 -0.31
90 AT3G02260 auxin transport protein (BIG) ATTENUATED SHADE AVOIDANCE 1, BIG,
CORYMBOSA1, DARK OVER-EXPRESSION
OF CAB 1, LOW PHOSPHATE-RESISTANT
ROOT 1, TRANSPORT INHIBITOR
RESPONSE 3, UMBRELLA 1		 -0.68 0.33 -0.3
91 AT3G57570 ARM repeat superfamily protein -0.67 0.31 -0.31
92 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 -0.67 0.33 -0.3
93 AT5G24010 Protein kinase superfamily protein -0.67 0.29 -0.3
94 AT2G07650 transposable element gene -0.67 0.31 -0.3
95 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 -0.67 0.29 -0.32
96 AT5G15020 SIN3-like 2 SIN3-like 2 -0.67 0.31 -0.33
97 AT3G57530 calcium-dependent protein kinase 32 ATCPK32, CDPK32, calcium-dependent
protein kinase 32		 -0.66 0.33 -0.33
98 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 -0.66 0.33 -0.31
99 AT3G06400 chromatin-remodeling protein 11 chromatin-remodeling protein 11 -0.66 0.33 -0.29
100 AT2G27390 proline-rich family protein -0.66 0.32 -0.32
101 AT5G11700 LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: glycine-rich protein
(TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.66 0.32 -0.34
102 AT3G08020 PHD finger family protein -0.66 0.29 -0.31
103 AT3G14720 MAP kinase 19 ARABIDOPSIS THALIANA MAP KINASE
19, MAP kinase 19		 -0.66 0.3 -0.33
104 AT3G05670 RING/U-box protein -0.66 0.32 -0.31
105 AT1G36510 Nucleic acid-binding proteins superfamily -0.65 0.3 -0.31
106 AT5G55390 ENHANCED DOWNY MILDEW 2 ENHANCED DOWNY MILDEW 2 -0.65 0.31 -0.3
107 AT2G17110 Protein of unknown function (DUF630 and DUF632) -0.65 0.32 -0.3
108 AT4G38600 HEAT repeat ;HECT-domain (ubiquitin-transferase) KAKTUS, UBIQUITIN-PROTEIN LIGASE 3 -0.65 0.34 -0.29
109 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 -0.65 0.29 -0.31
110 AT4G14760 kinase interacting (KIP1-like) family protein -0.65 0.34 -0.31
111 AT1G45160 Protein kinase superfamily protein -0.64 0.3 -0.33
112 AT1G20120 GDSL-like Lipase/Acylhydrolase superfamily protein -0.63 0.32 -0.33
113 AT2G25730 unknown protein; Has 157 Blast hits to 144 proteins in 62
species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source:
NCBI BLink).		 -0.63 0.3 -0.33
114 AT3G59100 glucan synthase-like 11 glucan synthase-like 11, gsl11,
glucan synthase-like 11		 -0.63 0.32 -0.34
115 AT5G20840 Phosphoinositide phosphatase family protein -0.62 0.33 -0.32
116 AT5G61910 DCD (Development and Cell Death) domain protein -0.62 0.31 -0.31
117 AT3G12810 SNF2 domain-containing protein / helicase domain-containing
protein		 chr13, PHOTOPERIOD-INDEPENDENT
EARLY FLOWERING 1, SRCAP		 -0.62 0.33 -0.32
118 AT5G52050 MATE efflux family protein -0.62 0.32 -0.31
119 ATMG00400 hypothetical protein ORF157 -0.62 0.33 -0.31
120 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 -0.62 0.3 -0.33
121 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 -0.62 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
122 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		-0.86 0.46 -0.45 C0123
123 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - -0.83 0.44 -0.46
124 C0210 Phytol E-Phytol Phytol chlorophyll a degradation II,
chlorophyll a degradation,
phytol salvage pathway 		-0.71 0.43 -0.47 C0210
125 C0254 Threonine D,L-Threonine L-Threonine isoleucine biosynthesis I (from threonine),
glycine biosynthesis,
threonine biosynthesis from homoserine,
tRNA charging 		-0.65 0.32 -0.32 C0254
126 C0264 Valine D,L-Valine L-Valine jasmonoyl-amino acid conjugates biosynthesis I,
pantothenate biosynthesis,
IAA degradation V,
valine degradation I,
valine biosynthesis,
tRNA charging,
indole-3-acetyl-amino acid biosynthesis 		-0.65 0.31 -0.31 C0264