AT4G30220 : small nuclear ribonucleoprotein F
Query Information
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AGICode AT4G30220
Description small nuclear ribonucleoprotein F
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G30220 small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F 1 0.3 -0.32
2 AT3G10610 Ribosomal S17 family protein 0.88 0.32 -0.32
3 AT2G19750 Ribosomal protein S30 family protein 0.86 0.3 -0.32
4 AT2G27710 60S acidic ribosomal protein family 0.86 0.33 -0.3
5 AT1G22270 Trm112p-like protein 0.86 0.32 -0.31
6 AT4G34670 Ribosomal protein S3Ae 0.85 0.32 -0.29
7 AT1G51510 RNA-binding (RRM/RBD/RNP motifs) family protein Y14 0.85 0.33 -0.32
8 AT4G33250 eukaryotic translation initiation factor 3K ATTIF3K1, eukaryotic translation
initiation factor 3K, TIF3K1		 0.85 0.31 -0.29
9 AT1G49600 RNA-binding protein 47A RNA-binding protein 47A,
RNA-binding protein 47A		 0.84 0.32 -0.31
10 AT3G02560 Ribosomal protein S7e family protein 0.84 0.33 -0.3
11 AT1G29400 MEI2-like protein 5 MEI2-like protein 5, MEI2-like
protein 5		 -0.83 0.3 -0.3
12 AT4G34555 Ribosomal protein S25 family protein 0.83 0.29 -0.32
13 AT1G44835 YbaK/aminoacyl-tRNA synthetase-associated domain 0.83 0.33 -0.32
14 AT2G19720 ribosomal protein S15A B ribosomal protein S15A B 0.83 0.33 -0.3
15 AT5G27470 seryl-tRNA synthetase / serine--tRNA ligase 0.83 0.32 -0.31
16 AT5G08180 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.82 0.31 -0.31
17 AT5G02880 ubiquitin-protein ligase 4 ubiquitin-protein ligase 4 -0.82 0.32 -0.31
18 AT1G04170 eukaryotic translation initiation factor 2 gamma subunit eukaryotic translation initiation
factor 2 gamma subunit		 0.82 0.32 -0.32
19 AT5G08040 mitochondrial import receptor subunit TOM5 homolog mitochondrial import receptor
subunit TOM5 homolog		 0.82 0.31 -0.31
20 AT1G28395 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast
hits to 89 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.81 0.31 -0.31
21 AT1G48830 Ribosomal protein S7e family protein 0.81 0.32 -0.31
22 AT2G43460 Ribosomal L38e protein family 0.81 0.33 -0.31
23 AT5G44340 tubulin beta chain 4 tubulin beta chain 4 0.81 0.31 -0.31
24 AT2G29540 RNApolymerase 14 kDa subunit ATRPAC14, RNApolymerase 14 kDa
subunit, RNApolymerase 14 kDa
subunit		 0.81 0.34 -0.3
25 AT2G20490 nucleolar RNA-binding Nop10p family protein EMBRYO SAC DEVELOPMENT ARREST 27,
NOP10		 0.81 0.32 -0.31
26 AT5G16130 Ribosomal protein S7e family protein 0.8 0.3 -0.31
27 AT3G51010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24
proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.8 0.33 -0.3
28 AT4G09800 S18 ribosomal protein S18 ribosomal protein 0.8 0.3 -0.3
29 AT1G52930 Ribosomal RNA processing Brix domain protein 0.79 0.33 -0.32
30 AT2G39795 Mitochondrial glycoprotein family protein 0.79 0.31 -0.33
31 AT3G18190 TCP-1/cpn60 chaperonin family protein 0.79 0.32 -0.34
32 AT3G22300 ribosomal protein S10 ribosomal protein S10 0.79 0.33 -0.31
33 AT1G11240 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12
(InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins
in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921;
Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes -
933 (source: NCBI BLink).		 0.79 0.31 -0.31
34 AT1G12270 stress-inducible protein, putative Hop1 0.79 0.32 -0.31
35 AT1G53280 Class I glutamine amidotransferase-like superfamily protein DJ-1 homolog B, DJ-1 homolog B -0.79 0.33 -0.3
36 AT5G49460 ATP citrate lyase subunit B 2 ATP citrate lyase subunit B 2 0.79 0.33 -0.33
37 AT3G55010 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast
/ phosphoribosyl-aminoimidazole synthetase / AIR synthase
(PUR5)		 ATPURM, EMBRYO DEFECTIVE 2818,
PUR5		 0.79 0.33 -0.3
38 AT5G41060 DHHC-type zinc finger family protein 0.79 0.28 -0.35
39 AT3G12860 NOP56-like pre RNA processing ribonucleoprotein 0.79 0.32 -0.3
40 AT5G60360 aleurain-like protease aleurain-like protease,
aleurain-like protease, SENESCENCE
ASSOCIATED GENE2		 -0.78 0.31 -0.32
41 AT3G10730 SAD1/UNC-84 domain protein 2 ARABIDOPSIS SAD1/UNC-84 DOMAIN
PROTEIN 2, SAD1/UNC-84 domain
protein 2		 0.78 0.31 -0.31
42 AT3G13674 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast
hits to 76 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.78 0.31 -0.3
43 AT3G44880 Pheophorbide a oxygenase family protein with Rieske
[2Fe-2S] domain		 ACCELERATED CELL DEATH 1, LETHAL
LEAF-SPOT 1 HOMOLOG, PHEOPHORBIDE
A OXYGENASE		 -0.78 0.33 -0.31
44 AT5G67630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.78 0.33 -0.32
45 AT2G39900 GATA type zinc finger transcription factor family protein WLIM2a 0.78 0.32 -0.28
46 AT5G64650 Ribosomal protein L17 family protein 0.77 0.32 -0.33
47 AT1G21410 F-box/RNI-like superfamily protein SKP2A -0.77 0.32 -0.32
48 AT1G49760 poly(A) binding protein 8 poly(A) binding protein 8, POLY(A)
BINDING PROTEIN 8		 0.77 0.32 -0.29
49 AT5G26360 TCP-1/cpn60 chaperonin family protein 0.77 0.31 -0.33
50 AT2G19670 protein arginine methyltransferase 1A ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 1A,
protein arginine methyltransferase
1A		 0.77 0.31 -0.32
51 AT2G40550 E2F target gene 1 E2F target gene 1 0.77 0.31 -0.3
52 AT4G28190 Developmental regulator, ULTRAPETALA ULTRAPETALA, ULTRAPETALA1 0.77 0.34 -0.29
53 AT1G72770 homology to ABI1 HYPERSENSITIVE TO ABA1 -0.77 0.32 -0.3
54 AT1G07790 Histone superfamily protein HTB1 0.77 0.31 -0.33
55 AT4G30130 Protein of unknown function (DUF630 and DUF632) 0.76 0.32 -0.33
56 AT1G32440 plastidial pyruvate kinase 3 plastidial pyruvate kinase 3 0.76 0.31 -0.32
57 AT3G63130 RAN GTPase activating protein 1 RAN GTPASE-ACTIVATING PROTEIN 1,
RAN GTPase activating protein 1		 0.76 0.31 -0.31
58 AT5G11630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.76 0.32 -0.34
59 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein 0.76 0.32 -0.32
60 AT2G46230 PIN domain-like family protein 0.76 0.31 -0.31
61 AT1G08780 ABI3-interacting protein 3 ABI3-interacting protein 3,
PREFOLDIN 4		 0.76 0.31 -0.3
62 AT5G19570 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0546
(InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.76 0.29 -0.35
63 AT5G57370 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1777 (InterPro:IPR013957); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.76 0.32 -0.31
64 AT3G62840 Small nuclear ribonucleoprotein family protein 0.76 0.32 -0.34
65 AT1G57620 emp24/gp25L/p24 family/GOLD family protein 0.76 0.33 -0.32
66 AT1G04440 casein kinase like 13 casein kinase like 13 -0.74 0.32 -0.32
67 AT4G38060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits
to 63 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.74 0.3 -0.3
68 AT3G02050 K+ uptake transporter 3 ARABIDOPSIS THALIANA POTASSIUM
TRANSPORTER 4, ATKUP3, K+ uptake
transporter 3		 -0.74 0.3 -0.31
69 AT4G29010 Enoyl-CoA hydratase/isomerase family ABNORMAL INFLORESCENCE MERISTEM -0.74 0.33 -0.32
70 AT4G24450 phosphoglucan, water dikinase ATGWD2, GWD3, phosphoglucan, water
dikinase		 -0.73 0.31 -0.3
71 AT3G16857 response regulator 1 response regulator 1, response
regulator 1		 -0.73 0.32 -0.31
72 AT3G51310 VPS35 homolog C VPS35 homolog C -0.73 0.29 -0.33
73 AT5G22270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits
to 136 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.32 -0.3
74 AT5G49650 xylulose kinase-2 xylulose kinase-2, XYLULOSE KINASE
2		 -0.71 0.3 -0.31
75 AT5G55120 galactose-1-phosphate guanylyltransferase
(GDP)s;GDP-D-glucose phosphorylases;quercetin
4'-O-glucosyltransferases		 VITAMIN C DEFECTIVE 5 -0.71 0.31 -0.32
76 AT1G54160 nuclear factor Y, subunit A5 nuclear factor Y, subunit A5,
NUCLEAR FACTOR Y A5		 -0.71 0.33 -0.32
77 AT2G47770 TSPO(outer membrane tryptophan-rich sensory
protein)-related		 TSPO(outer membrane
tryptophan-rich sensory
protein)-related, TSPO(outer
membrane tryptophan-rich sensory
protein)-related		 -0.71 0.32 -0.29
78 AT2G35680 Phosphotyrosine protein phosphatases superfamily protein -0.71 0.31 -0.31
79 AT1G78130 Major facilitator superfamily protein unfertilized embryo sac 2 -0.71 0.31 -0.34
80 AT5G10940 transducin family protein / WD-40 repeat family protein ALTERED SEED GERMINATION 2 -0.71 0.3 -0.33
81 AT4G29820 homolog of CFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF
CFIM-25, homolog of CFIM-25		 -0.7 0.3 -0.32
82 AT2G41480 Peroxidase superfamily protein -0.7 0.32 -0.31
83 AT2G30550 alpha/beta-Hydrolases superfamily protein -0.7 0.31 -0.3
84 AT3G17250 Protein phosphatase 2C family protein -0.7 0.31 -0.34
85 AT4G30960 SOS3-interacting protein 3 CBL-INTERACTING PROTEIN KINASE 6,
CBL-INTERACTING PROTEIN KINASE 6,
SOS3-interacting protein 3,
SNF1-RELATED PROTEIN KINASE 3.14		 -0.7 0.31 -0.33
86 AT1G77420 alpha/beta-Hydrolases superfamily protein -0.7 0.31 -0.34
87 AT1G73040 Mannose-binding lectin superfamily protein -0.7 0.34 -0.32
88 AT1G17745 D-3-phosphoglycerate dehydrogenase 3-phosphoglycerate dehydrogenase -0.7 0.31 -0.31
89 AT5G64900 precursor of peptide 1 ARABIDOPSIS THALIANA PEPTIDE 1,
PEPTIDE 1, precursor of peptide 1		 -0.69 0.31 -0.31
90 AT3G25740 methionine aminopeptidase 1C methionine aminopeptidase 1C,
METHIONINE AMINOPEPTIDASE 1C		 -0.69 0.3 -0.32
91 AT1G80310 sulfate transmembrane transporters molybdate transporter 2 -0.69 0.33 -0.3
92 AT2G39030 Acyl-CoA N-acyltransferases (NAT) superfamily protein N-acetyltransferase activity 1 -0.69 0.31 -0.3
93 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein -0.69 0.3 -0.32
94 AT2G43530 Scorpion toxin-like knottin superfamily protein -0.69 0.32 -0.32
95 AT3G26000 Ribonuclease inhibitor -0.69 0.33 -0.32
96 AT3G01200 PPDK regulatory protein 2 PPDK regulatory protein 2, PPDK
regulatory protein 2		 -0.69 0.31 -0.32
97 AT1G17830 Protein of unknown function (DUF789) -0.69 0.33 -0.33
98 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 -0.69 0.3 -0.31
99 AT1G16730 unknown protein 6 unknown protein 6 -0.69 0.32 -0.33
100 AT2G37650 GRAS family transcription factor -0.69 0.31 -0.33
101 AT5G24380 YELLOW STRIPE like 2 YELLOW STRIPE LIKE 2, YELLOW
STRIPE like 2		 -0.68 0.32 -0.31
102 AT5G43840 heat shock transcription factor A6A heat shock transcription factor
A6A, heat shock transcription
factor A6A		 -0.68 0.35 -0.32
103 AT5G64280 dicarboxylate transporter 2.2 dicarboxylate transporter 2.2 -0.68 0.32 -0.32
104 AT5G42600 marneral synthase marneral synthase -0.68 0.29 -0.33
105 AT1G53560 Ribosomal protein L18ae family -0.68 0.32 -0.31
106 AT3G21750 UDP-glucosyl transferase 71B1 UDP-glucosyl transferase 71B1 -0.68 0.32 -0.31
107 AT3G22430 CONTAINS InterPro DOMAIN/s: Domain of unknown function XS
(InterPro:IPR005380); BEST Arabidopsis thaliana protein
match is: XS domain-containing protein / XS zinc finger
domain-containing protein-related (TAIR:AT5G23570.1); Has
565 Blast hits to 510 proteins in 121 species: Archae - 2;
Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51;
Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).		 -0.67 0.31 -0.32
108 AT3G06810 acyl-CoA dehydrogenase-related IBA-RESPONSE 3 -0.67 0.33 -0.3
109 AT5G45350 proline-rich family protein -0.67 0.32 -0.31
110 AT5G29000 Homeodomain-like superfamily protein PHR1-like 1 -0.67 0.3 -0.32
111 AT5G11720 Glycosyl hydrolases family 31 protein -0.67 0.3 -0.31
112 AT3G23200 Uncharacterised protein family (UPF0497) -0.67 0.31 -0.33
113 AT1G72830 nuclear factor Y, subunit A3 ATHAP2C, HAP2C, nuclear factor Y,
subunit A3		 -0.67 0.31 -0.32
114 AT4G15475 F-box/RNI-like superfamily protein -0.67 0.32 -0.33
115 AT3G08870 Concanavalin A-like lectin protein kinase family protein -0.67 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
116 C0217 Putative glucosinole - - - 0.88 0.46 -0.41