AT4G29610 : -
Query Information
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AGICode AT4G29610
Description Cytidine/deoxycytidylate deaminase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G29610 Cytidine/deoxycytidylate deaminase family protein 1 0.3 -0.31
2 AT3G62330 Zinc knuckle (CCHC-type) family protein -0.75 0.33 -0.31
3 AT1G54720 early-responsive to dehydration protein-related / ERD
protein-related		 -0.67 0.31 -0.32
4 AT1G35030 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G34910.1); Has 7 Blast
hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.32 -0.32
5 AT5G61210 soluble N-ethylmaleimide-sensitive factor adaptor protein
33		 ATSNAP33, ATSNAP33B, soluble
N-ethylmaleimide-sensitive factor
adaptor protein 33, SNP33		 0.67 0.3 -0.34
6 AT2G22950 Cation transporter/ E1-E2 ATPase family protein auto-regulated Ca2+-ATPase 7 0.67 0.3 -0.35
7 AT1G34210 somatic embryogenesis receptor-like kinase 2 ATSERK2, somatic embryogenesis
receptor-like kinase 2		 -0.66 0.32 -0.33
8 AT1G09170 P-loop nucleoside triphosphate hydrolases superfamily
protein with CH (Calponin Homology) domain		 0.66 0.31 -0.31
9 AT3G49830 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.66 0.33 -0.33
10 AT5G58910 laccase 16 laccase 16 0.66 0.32 -0.33
11 AT2G14690 Glycosyl hydrolase superfamily protein 0.66 0.31 -0.32
12 AT1G01770 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1446 (InterPro:IPR010839); Has 1597
Blast hits to 1509 proteins in 306 species: Archae - 4;
Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31;
Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).		 -0.66 0.33 -0.34
13 AT1G55450 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.65 0.32 -0.33
14 AT1G68750 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4,
phosphoenolpyruvate carboxylase 4		 -0.65 0.32 -0.32
15 AT5G47560 tonoplast dicarboxylate transporter ATSDAT, TONOPLAST DICARBOXYLATE
TRANSPORTER, tonoplast
dicarboxylate transporter		 -0.65 0.31 -0.31
16 AT1G10720 BSD domain-containing protein 0.65 0.3 -0.32
17 AT3G18170 Glycosyltransferase family 61 protein 0.65 0.32 -0.3
18 AT5G53460 NADH-dependent glutamate synthase 1 NADH-dependent glutamate synthase
1		 -0.64 0.3 -0.32
19 AT1G55610 BRI1 like BRI1 like -0.64 0.32 -0.3
20 AT4G29740 cytokinin oxidase 4 ATCKX4, cytokinin oxidase 4 0.63 0.32 -0.29
21 AT4G35930 F-box family protein 0.63 0.31 -0.31
22 AT5G60740 ABC transporter family protein ATP-binding cassette G28 0.63 0.31 -0.33
23 AT2G23990 early nodulin-like protein 11 AtENODL11, early nodulin-like
protein 11		 0.63 0.3 -0.32
24 AT4G26870 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 -0.63 0.32 -0.3
25 AT2G43420 3-beta hydroxysteroid dehydrogenase/isomerase family
protein		 -0.63 0.33 -0.32
26 AT5G44070 phytochelatin synthase 1 (PCS1) ARA8, ARABIDOPSIS THALIANA
PHYTOCHELATIN SYNTHASE 1, CADMIUM
SENSITIVE 1, PHYTOCHELATIN
SYNTHASE 1		 0.63 0.32 -0.32
27 AT5G06610 Protein of unknown function (DUF620) 0.62 0.33 -0.32
28 AT5G07710 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.62 0.31 -0.32
29 AT2G28960 Leucine-rich repeat protein kinase family protein 0.62 0.31 -0.3
30 AT5G25370 phospholipase D alpha 3 phospholipase D alpha 3 0.62 0.31 -0.34
31 AT5G61310 Cytochrome c oxidase subunit Vc family protein -0.61 0.3 -0.32
32 AT2G25760 Protein kinase family protein -0.61 0.31 -0.32
33 AT1G75800 Pathogenesis-related thaumatin superfamily protein 0.61 0.32 -0.31
34 AT1G66460 Protein kinase superfamily protein 0.61 0.3 -0.33
35 AT1G65940 pseudogene, similar to Dof zinc finger protein, blastp
match of 61% identity and 1.7e-10 P-value to
GP|4996646|dbj|BAA78575.1||AB028132 Dof zinc finger protein
{Oryza sativa}		 0.61 0.31 -0.32
36 AT2G40750 WRKY DNA-binding protein 54 WRKY DNA-BINDING PROTEIN 54, WRKY
DNA-binding protein 54		 0.61 0.31 -0.31
37 AT3G43920 dicer-like 3 DICER-LIKE 3, dicer-like 3 -0.61 0.32 -0.3
38 AT5G03390 Protein of unknown function (DUF295) 0.6 0.32 -0.31
39 AT2G35920 RNA helicase family protein -0.6 0.32 -0.33
40 AT4G19440 Tetratricopeptide repeat (TPR)-like superfamily protein -0.6 0.3 -0.32
41 AT3G15550 unknown protein; Has 25732 Blast hits to 16979 proteins in
961 species: Archae - 144; Bacteria - 1801; Metazoa -
12681; Fungi - 1868; Plants - 912; Viruses - 94; Other
Eukaryotes - 8232 (source: NCBI BLink).		 0.6 0.33 -0.3
42 AT1G49100 Leucine-rich repeat protein kinase family protein 0.6 0.3 -0.32
43 AT1G48980 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.6 0.33 -0.31
44 AT1G50590 RmlC-like cupins superfamily protein 0.6 0.32 -0.32
45 AT2G44710 RNA-binding (RRM/RBD/RNP motifs) family protein -0.6 0.3 -0.34
46 AT4G27430 COP1-interacting protein 7 COP1-interacting protein 7 0.59 0.34 -0.3
47 AT3G20100 cytochrome P450, family 705, subfamily A, polypeptide 19 cytochrome P450, family 705,
subfamily A, polypeptide 19		 -0.59 0.33 -0.32
48 AT5G13280 aspartate kinase 1 ASPARTATE KINASE, aspartate kinase
1, ASPARTATE KINASE 1		 -0.59 0.33 -0.31
49 AT2G26940 C2H2-type zinc finger family protein 0.59 0.3 -0.31
50 AT1G18280 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.59 0.35 -0.31
51 AT1G37150 holocarboxylase synthetase 2 holocarboxylase synthetase 2 -0.59 0.32 -0.3
52 AT1G26900 Pentatricopeptide repeat (PPR) superfamily protein -0.59 0.32 -0.33
53 AT3G45990 Cofilin/tropomyosin-type actin-binding protein family 0.59 0.32 -0.33
54 AT1G32300 D-arabinono-1,4-lactone oxidase family protein 0.59 0.31 -0.31
55 AT5G57320 villin, putative villin 5 -0.59 0.32 -0.32
56 AT1G14940 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.59 0.32 -0.32
57 AT5G26230 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 membrane-associated kinase
regulator 1		 0.59 0.29 -0.3
58 AT2G22420 Peroxidase superfamily protein -0.58 0.33 -0.32
59 AT2G20210 RNI-like superfamily protein 0.58 0.33 -0.33
60 AT4G14590 embryo defective 2739 embryo defective 2739 0.58 0.31 -0.33
61 AT5G62230 ERECTA-like 1 ERECTA-like 1 0.58 0.31 -0.31
62 AT1G33130 transposable element gene 0.58 0.33 -0.31
63 AT2G48100 Exonuclease family protein -0.58 0.32 -0.31
64 AT2G18780 F-box and associated interaction domains-containing protein -0.58 0.3 -0.32
65 AT1G07610 metallothionein 1C metallothionein 1C -0.58 0.3 -0.31
66 AT1G43900 Protein phosphatase 2C family protein -0.58 0.31 -0.31
67 AT1G63580 Receptor-like protein kinase-related family protein 0.58 0.31 -0.32
68 AT1G22760 poly(A) binding protein 3 poly(A) binding protein 3 0.58 0.31 -0.34
69 AT4G05150 Octicosapeptide/Phox/Bem1p family protein 0.58 0.31 -0.34
70 AT1G74840 Homeodomain-like superfamily protein 0.58 0.31 -0.31
71 AT3G20620 F-box family protein-related -0.58 0.32 -0.31
72 AT1G42630 transposable element gene 0.57 0.29 -0.33
73 AT1G78440 Arabidopsis thaliana gibberellin 2-oxidase 1 Arabidopsis thaliana gibberellin
2-oxidase 1, gibberellin 2-oxidase
1		 0.57 0.32 -0.31
74 AT2G23900 Pectin lyase-like superfamily protein 0.57 0.31 -0.32
75 AT4G30900 DNAse I-like superfamily protein -0.57 0.32 -0.32
76 AT5G05310 TLC ATP/ADP transporter -0.57 0.3 -0.32
77 AT3G04420 NAC domain containing protein 48 NAC domain containing protein 48,
NAC domain containing protein 48		 -0.57 0.3 -0.33
78 AT2G14830 Regulator of Vps4 activity in the MVB pathway protein 0.57 0.31 -0.32
79 AT5G25900 GA requiring 3 ARABIDOPSIS THALIANA ENT-KAURENE
OXIDASE 1, CYTOCHROME P450 701 A3,
GA requiring 3		 -0.57 0.31 -0.32
80 AT2G33160 glycoside hydrolase family 28 protein / polygalacturonase
(pectinase) family protein		 0.57 0.3 -0.31
81 AT5G45640 Subtilisin-like serine endopeptidase family protein 0.56 0.33 -0.3
82 AT1G64030 serpin 3 ATSRP3, serpin 3 0.56 0.32 -0.31
83 AT5G24320 Transducin/WD40 repeat-like superfamily protein -0.56 0.31 -0.32
84 AT4G07580 transposable element gene 0.56 0.33 -0.29
85 AT5G44750 DNA-directed DNA polymerases ARABIDOPSIS THALIANA HOMOLOG OF
REVERSIONLESS 1, REV1		 -0.55 0.29 -0.32
86 AT1G25360 Pentatricopeptide repeat (PPR) superfamily protein -0.55 0.32 -0.31
87 AT2G18190 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.55 0.3 -0.3
88 AT2G28200 C2H2-type zinc finger family protein -0.55 0.31 -0.31
89 AT2G12720 transposable element gene -0.55 0.31 -0.31
90 AT1G13140 cytochrome P450, family 86, subfamily C, polypeptide 3 cytochrome P450, family 86,
subfamily C, polypeptide 3		 -0.55 0.3 -0.31
91 AT1G23880 NHL domain-containing protein -0.54 0.3 -0.31
92 AT5G46540 P-glycoprotein 7 ATP-binding cassette B7,
P-glycoprotein 7		 -0.54 0.32 -0.33
93 AT4G14820 Pentatricopeptide repeat (PPR) superfamily protein -0.54 0.3 -0.33
94 AT5G65550 UDP-Glycosyltransferase superfamily protein -0.54 0.32 -0.34
95 AT5G37710 alpha/beta-Hydrolases superfamily protein -0.54 0.32 -0.34
96 AT2G27700 eukaryotic translation initiation factor 2 family protein /
eIF-2 family protein		 -0.54 0.32 -0.32
97 AT4G03140 NAD(P)-binding Rossmann-fold superfamily protein -0.53 0.32 -0.32
98 AT3G16220 Predicted eukaryotic LigT -0.53 0.31 -0.32
99 AT5G47280 ADR1-like 3 ADR1-like 3 -0.53 0.33 -0.32
100 AT1G77760 nitrate reductase 1 GNR1, nitrate reductase 1, NITRATE
REDUCTASE 1		 -0.53 0.29 -0.31
101 AT2G02380 glutathione S-transferase (class zeta) 2 glutathione S-transferase (class
zeta) 2, glutathione S-transferase
(class zeta) 2		 -0.53 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
102 C0227 Ribose D-Ribose D-Ribose ribose degradation,
guanosine nucleotides degradation I,
pyrimidine salvage pathway,
pyridine nucleotide cycling (plants),
adenine and adenosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage II,
cis-zeatin biosynthesis,
adenosine nucleotides degradation I,
pyrimidine ribonucleosides degradation II 		-0.76 0.46 -0.46 C0227
103 C0199 Phosphatidylethanolamine-36:6 - Phosphatidylethanolamine-36:6 phospholipid biosynthesis II,
linoleate biosynthesis I,
phosphatidylethanolamine biosynthesis I,
phosphatidylethanolamine biosynthesis II,
glutathione redox reactions I 		0.73 0.5 -0.51 C0199
104 C0208 Phosphatidylinositol-34:2 - Phosphatidylinositol-34:2 3-phosphoinositide biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
sphingolipid biosynthesis,
linoleate biosynthesis I,
cutin biosynthesis,
glycerophosphodiester degradation,
phosphate acquisition,
glutathione redox reactions I 		0.69 0.5 -0.51 C0208
105 C0197 Phosphatidylcholine-36:1 - Phosphatidylcholine-36:1 choline biosynthesis III,
diacylglycerol biosynthesis,
phospholipases,
triacylglycerol biosynthesis,
linoleate biosynthesis I,
phosphatidylcholine biosynthesis III,
glutathione redox reactions I 		0.61 0.54 -0.5 C0197
106 C0205 Phosphatidylglycerol-34:3 - Phosphatidylglycerol-34:3 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		0.6 0.35 -0.32
107 C0076 Digalactosyldiacylglycerol-34:1 - Digalactosyldiacylglycerol-34:1 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.59 0.33 -0.34
108 C0255 Trehalose α,α-D-Trehalose Trehalose trehalose degradation II (trehalase),
trehalose biosynthesis I 		0.59 0.3 -0.29 C0255
109 C0077 Digalactosyldiacylglycerol-34:2 - Digalactosyldiacylglycerol-34:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.57 0.34 -0.33
110 C0108 GMP - GMP guanine and guanosine salvage II,
guanosine nucleotides degradation I,
guanosine nucleotides degradation II,
guanine and guanosine salvage III,
purine nucleotides de novo biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification) 		0.57 0.46 -0.43 C0108