AT4G28900 : -
Query Information
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AGICode AT4G28900
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G28900 transposable element gene 1 0.31 -0.33
2 AT5G25860 F-box/RNI-like superfamily protein 0.74 0.32 -0.33
3 AT5G24440 CTC-interacting domain 13 CTC-interacting domain 13 0.69 0.32 -0.33
4 AT4G04170 transposable element gene 0.69 0.32 -0.32
5 AT1G80740 chromomethylase 1 chromomethylase 1, DNA
METHYLTRANSFERASE 4		 0.68 0.32 -0.33
6 AT4G39490 cytochrome P450, family 96, subfamily A, polypeptide 10 cytochrome P450, family 96,
subfamily A, polypeptide 10		 0.66 0.32 -0.34
7 AT4G32220 transposable element gene -0.66 0.32 -0.32
8 AT3G29775 transposable element gene -0.65 0.31 -0.34
9 AT1G16290 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast,
vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic
transglycosylase-like, catalytic (InterPro:IPR008258); Has
171 Blast hits to 155 proteins in 40 species: Archae - 0;
Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses
- 0; Other Eukaryotes - 62 (source: NCBI BLink).		 0.65 0.31 -0.33
10 AT3G13480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G55475.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.64 0.31 -0.32
11 AT5G33350 pseudogene, similar to P0406H10.5, nucleoid DNA-binding
protein cnd41, chloroplast - Nicotiana tabacum, PIR:T01996;
blastp match of 37% identity and 1.5e-57 P-value to
GP|9711879|dbj|BAB07973.1||AP002524 P0406H10.5 {Oryza
sativa (japonica cultivar-group)}		 0.63 0.32 -0.32
12 AT4G26340 F-box/RNI-like/FBD-like domains-containing protein 0.63 0.32 -0.3
13 AT1G29770 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.63 0.3 -0.32
14 AT5G57730 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.33 -0.32
15 AT3G06260 galacturonosyltransferase-like 4 galacturonosyltransferase-like 4,
galactinol synthase 9		 0.62 0.33 -0.31
16 AT3G44410 pseudogene, disease resistence protein, putative, similar
to disease resistance protein RPP1-WsB (Arabidopsis
thaliana) gi|3860165|gb|AAC72978		 0.61 0.31 -0.31
17 AT2G39320 Cysteine proteinases superfamily protein 0.61 0.32 -0.32
18 AT2G04300 Leucine-rich repeat protein kinase family protein -0.6 0.32 -0.33
19 AT4G10490 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.6 0.29 -0.34
20 AT2G45040 Matrixin family protein 0.6 0.31 -0.3
21 AT5G18040 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G29760.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.6 0.27 -0.31
22 AT5G61920 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G67170.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.59 0.3 -0.28
23 AT2G03880 Pentatricopeptide repeat (PPR) superfamily protein required for efficiency of
mitochondrial editing 1		 -0.58 0.31 -0.34
24 AT1G48940 early nodulin-like protein 6 AtENODL6, early nodulin-like
protein 6		 0.58 0.3 -0.31
25 AT3G42310 unknown protein; Has 66 Blast hits to 66 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0;
Plants - 18; Viruses - 31; Other Eukaryotes - 5 (source:
NCBI BLink).		 -0.58 0.3 -0.32
26 AT5G44880 transposable element gene 0.58 0.3 -0.33
27 AT3G42830 RING/U-box superfamily protein 0.57 0.31 -0.33
28 AT3G30830 transposable element gene 0.57 0.32 -0.32
29 AT4G29090 Ribonuclease H-like superfamily protein -0.57 0.34 -0.32
30 AT3G33064 transposable element gene -0.57 0.31 -0.33
31 AT2G11690 transposable element gene 0.57 0.33 -0.33
32 AT3G18700 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: cultured cell; BEST Arabidopsis
thaliana protein match is: autoinhibited Ca2+/ATPase II
(TAIR:AT1G13210.1); Has 223 Blast hits to 223 proteins in
38 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi -
0; Plants - 126; Viruses - 0; Other Eukaryotes - 5 (source:
NCBI BLink).		 0.57 0.31 -0.32
33 AT4G19570 Chaperone DnaJ-domain superfamily protein 0.57 0.31 -0.33
34 AT2G16485 nucleic acid binding;zinc ion binding;DNA binding -0.57 0.32 -0.31
35 AT1G66930 Protein kinase superfamily protein 0.56 0.32 -0.31
36 AT1G10710 poor homologous synapsis 1 POOR HOMOLOGOUS SYNAPSIS 1 0.56 0.33 -0.33
37 AT2G06310 transposable element gene 0.56 0.31 -0.32
38 AT2G12480 serine carboxypeptidase-like 43 serine carboxypeptidase-like 43 0.56 0.31 -0.3
39 AT2G44090 Ankyrin repeat family protein 0.56 0.3 -0.3
40 AT5G59660 Leucine-rich repeat protein kinase family protein 0.56 0.31 -0.32
41 AT2G42940 Predicted AT-hook DNA-binding family protein -0.56 0.3 -0.32
42 AT1G29780 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.56 0.31 -0.32
43 AT5G06490 RING/U-box superfamily protein 0.56 0.31 -0.31
44 AT1G71470 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22090.1); Has 11 Blast hits
to 11 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.56 0.32 -0.3
45 AT4G07530 transposable element gene -0.55 0.3 -0.33
46 AT5G18350 Disease resistance protein (TIR-NBS-LRR class) family 0.55 0.31 -0.31
47 AT1G15190 Fasciclin-like arabinogalactan family protein 0.55 0.31 -0.32
48 AT2G11110 transposable element gene 0.55 0.33 -0.31
49 AT4G39756 Galactose oxidase/kelch repeat superfamily protein 0.55 0.3 -0.33
50 AT5G04630 cytochrome P450, family 77, subfamily A, polypeptide 9 cytochrome P450, family 77,
subfamily A, polypeptide 9		 0.55 0.32 -0.3
51 AT2G07320 transposable element gene -0.55 0.32 -0.32
52 AT1G68270 AMP-dependent synthetase and ligase family protein -0.54 0.36 -0.31
53 AT1G50350 BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT3G19950.1); Has 37 Blast hits
to 37 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.54 0.3 -0.3
54 AT4G26930 myb domain protein 97 myb domain protein 97, myb domain
protein 97		 0.54 0.32 -0.31
55 AT2G07280 unknown protein; Has 19 Blast hits to 19 proteins in 3
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.54 0.34 -0.31
56 AT3G19140 RING/U-box superfamily protein DAY NEUTRAL FLOWERING 0.54 0.31 -0.33
57 AT1G30020 Protein of unknown function, DUF538 -0.54 0.31 -0.31
58 AT2G34890 CTP synthase family protein -0.53 0.34 -0.31
59 AT2G07020 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.53 0.33 -0.32
60 AT4G20250 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.53 0.31 -0.36
61 AT4G34430 DNA-binding family protein SWITCH/SUCROSE NONFERMENTING 3D,
CHB3		 -0.53 0.31 -0.33
62 AT2G47120 NAD(P)-binding Rossmann-fold superfamily protein 0.53 0.32 -0.31
63 AT3G46910 Cullin family protein 0.53 0.32 -0.3
64 AT3G27800 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.53 0.32 -0.32
65 AT4G12270 Copper amine oxidase family protein -0.53 0.31 -0.3
66 AT1G54420 unknown protein; Has 9 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink).		 0.53 0.3 -0.32
67 AT4G18180 Pectin lyase-like superfamily protein -0.53 0.32 -0.31
68 AT5G56330 alpha carbonic anhydrase 8 alpha carbonic anhydrase 8, A.
THALIANA ALPHA CARBONIC ANHYDRASE
8		 0.53 0.32 -0.3
69 AT5G65180 ENTH/VHS family protein -0.52 0.3 -0.31
70 AT2G42140 VQ motif-containing protein -0.52 0.34 -0.3
71 AT2G35570 pseudogene, serpin (serine protease inhibitor) family,
similar to phloem serpin-1 (Cucurbita maxima) GI:9937311;
blastp match of 49% identity and 9.9e-85 P-value to
GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi}		 0.52 0.31 -0.3
72 AT1G49015 DPP6 N-terminal domain-like protein -0.52 0.31 -0.3
73 AT5G56160 Sec14p-like phosphatidylinositol transfer family protein 0.52 0.32 -0.32
74 AT1G77410 beta-galactosidase 16 beta-galactosidase 16 0.52 0.34 -0.33
75 AT1G05800 alpha/beta-Hydrolases superfamily protein DONGLE -0.52 0.31 -0.32
76 AT2G44420 protein N-terminal asparagine amidohydrolase family protein 0.52 0.29 -0.32
77 AT2G31500 calcium-dependent protein kinase 24 calcium-dependent protein kinase
24		 0.52 0.29 -0.32
78 AT1G62170 Serine protease inhibitor (SERPIN) family protein 0.52 0.3 -0.34
79 AT1G75250 RAD-like 6 RAD-like 6, RAD-like 6,
RADIALIS-LIKE SANT/MYB 3		 -0.52 0.33 -0.31
80 AT5G60320 Concanavalin A-like lectin protein kinase family protein 0.51 0.3 -0.33
81 AT4G17580 Bax inhibitor-1 family protein 0.51 0.3 -0.31
82 AT5G07380 unknown protein; Has 84 Blast hits to 81 proteins in 31
species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0;
Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.51 0.32 -0.32
83 AT5G62320 myb domain protein 99 myb domain protein 99, ATMYBCU15,
myb domain protein 99		 -0.51 0.32 -0.33
84 AT4G12220 BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT4G12210.1); Has 24 Blast hits
to 21 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.51 0.31 -0.3
85 AT3G17230 invertase/pectin methylesterase inhibitor family protein 0.51 0.32 -0.33
86 AT1G04730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMOSOME TRANSMISSION FIDELITY
18		 0.51 0.33 -0.32
87 AT1G15830 unknown protein; Has 165982 Blast hits to 57214 proteins in
2459 species: Archae - 263; Bacteria - 44622; Metazoa -
55751; Fungi - 10656; Plants - 17613; Viruses - 2527; Other
Eukaryotes - 34550 (source: NCBI BLink).		 0.51 0.32 -0.31
88 AT3G23650 protein kinase-related 0.51 0.32 -0.31
89 AT3G23130 C2H2 and C2HC zinc fingers superfamily protein FLORAL DEFECTIVE 10, FLORAL ORGAN
NUMBER 1, SUPERMAN		 0.51 0.31 -0.32
90 AT3G15970 NUP50 (Nucleoporin 50 kDa) protein -0.51 0.33 -0.31
91 AT5G22970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G60000.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.51 0.33 -0.32
92 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 0.51 0.32 -0.33
93 AT3G60470 Plant protein of unknown function (DUF247) 0.51 0.31 -0.31
94 AT1G22090 Protein of unknown function (DUF626) embryo defective 2204 0.51 0.33 -0.33
95 AT1G42560 Seven transmembrane MLO family protein ARABIDOPSIS THALIANA MILDEW
RESISTANCE LOCUS O 9, MILDEW
RESISTANCE LOCUS O 9		 -0.51 0.33 -0.32
96 AT3G48030 hypoxia-responsive family protein / zinc finger (C3HC4-type
RING finger) family protein		 -0.5 0.31 -0.32
97 AT5G52480 RNI-like superfamily protein -0.5 0.3 -0.32
98 AT3G25090 F-box associated ubiquitination effector family protein -0.49 0.29 -0.33
99 AT1G06840 Leucine-rich repeat protein kinase family protein -0.49 0.31 -0.31
100 AT3G28150 TRICHOME BIREFRINGENCE-LIKE 22 ALTERED XYLOGLUCAN 4-LIKE,
TRICHOME BIREFRINGENCE-LIKE 22		 -0.49 0.32 -0.31
101 AT3G12000 S-locus related protein SLR1, putative (S1) -0.49 0.32 -0.3
102 AT5G23790 galactinol synthase 5 galactinol synthase 5, galactinol
synthase 5		 -0.48 0.33 -0.3
103 AT2G40230 HXXXD-type acyl-transferase family protein -0.48 0.3 -0.34
104 AT3G12140 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML1, EMSY-like 1 -0.47 0.3 -0.32
105 AT5G61260 Plant calmodulin-binding protein-related -0.47 0.31 -0.31
106 AT4G04280 transposable element gene -0.47 0.32 -0.33
107 AT5G07640 RING/U-box superfamily protein -0.46 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
108 C0124 Isonicotinic acid - - - -0.7 0.42 -0.47