AT4G29090 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G29090
Description Ribonuclease H-like superfamily protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G29090 Ribonuclease H-like superfamily protein 1 0.31 -0.31
2 AT4G09290 transposable element gene 0.75 0.33 -0.31
3 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.74 0.31 -0.31
4 AT1G49570 Peroxidase superfamily protein 0.72 0.31 -0.32
5 AT2G35100 Exostosin family protein ARABINAN DEFICIENT 1 0.71 0.33 -0.31
6 AT1G71470 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22090.1); Has 11 Blast hits
to 11 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 0.71 0.33 -0.32
7 AT1G15190 Fasciclin-like arabinogalactan family protein -0.7 0.33 -0.34
8 AT1G35790 transposable element gene 0.7 0.29 -0.33
9 AT3G03050 cellulose synthase-like D3 CELLULOSE SYNTHASE LIKE D3,
cellulose synthase-like D3, KOJAK,
ROOT HAIR DEFECTIVE 7		 0.7 0.3 -0.3
10 AT2G16920 ubiquitin-conjugating enzyme 23 PHO2 FAMILY UBIQUITIN CONJUGATION
ENZYME 2, ubiquitin-conjugating
enzyme 23		 0.7 0.3 -0.31
11 AT1G54420 unknown protein; Has 9 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink).		 -0.7 0.3 -0.33
12 AT5G58410 HEAT/U-box domain-containing protein 0.69 0.33 -0.32
13 AT5G34895 transposable element gene -0.69 0.33 -0.3
14 AT3G20030 F-box and associated interaction domains-containing protein -0.69 0.32 -0.3
15 AT2G40740 WRKY DNA-binding protein 55 WRKY DNA-BINDING PROTEIN 55, WRKY
DNA-binding protein 55		 0.69 0.31 -0.33
16 AT1G59650 Protein of unknown function (DUF1336) CW14 0.69 0.31 -0.32
17 AT2G07320 transposable element gene 0.69 0.31 -0.32
18 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.68 0.31 -0.31
19 AT1G18830 Transducin/WD40 repeat-like superfamily protein 0.68 0.32 -0.32
20 AT1G01960 SEC7-like guanine nucleotide exchange family protein embryo sac development arrest 10 0.68 0.3 -0.33
21 AT5G43130 TBP-associated factor 4 TBP-associated factor 4,
TBP-associated factor 4B		 0.68 0.3 -0.32
22 AT2G14210 AGAMOUS-like 44 AGAMOUS-like 44, ARABIDOPSIS
NITRATE REGULATED 1		 0.68 0.31 -0.31
23 AT3G60410 Protein of unknown function (DUF1639) -0.67 0.31 -0.3
24 AT5G45850 Protein of unknown function (DUF688) -0.67 0.34 -0.33
25 AT2G07360 SH3 domain-containing protein 0.66 0.34 -0.32
26 AT4G17980 NAC domain containing protein 71 NAC domain containing protein 71,
NAC domain containing protein 71		 -0.66 0.31 -0.32
27 AT4G25970 phosphatidylserine decarboxylase 3 phosphatidylserine decarboxylase 3 0.66 0.31 -0.34
28 AT1G21630 Calcium-binding EF hand family protein 0.65 0.31 -0.34
29 AT5G23630 phosphate deficiency response 2 MALE GAMETOGENESIS IMPAIRED
ANTHERS, phosphate deficiency
response 2, PI DEFICIENCY RESPONSE
2		 0.65 0.31 -0.34
30 AT3G06160 AP2/B3-like transcriptional factor family protein -0.65 0.33 -0.31
31 AT5G17660 tRNA (guanine-N-7) methyltransferase -0.65 0.31 -0.33
32 AT2G40640 RING/U-box superfamily protein -0.64 0.32 -0.3
33 AT3G30843 transposable element gene 0.64 0.3 -0.31
34 AT4G39756 Galactose oxidase/kelch repeat superfamily protein -0.64 0.31 -0.32
35 AT3G11650 NDR1/HIN1-like 2 NDR1/HIN1-like 2 -0.64 0.3 -0.32
36 AT2G33620 AT hook motif DNA-binding family protein -0.64 0.3 -0.31
37 AT5G67270 end binding protein 1C MICROTUBULE END BINDING PROTEIN 1,
ATEB1-HOMOLOG1, end binding
protein 1C		 -0.64 0.34 -0.32
38 AT5G67550 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: 4 anthesis; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits
to 154 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.3 -0.31
39 AT2G07170 ARM repeat superfamily protein -0.64 0.32 -0.32
40 AT3G22050 Domain of unknown function (DUF26) 0.64 0.31 -0.31
41 AT3G30150 transposable element gene -0.64 0.31 -0.31
42 AT1G06530 Tropomyosin-related peroxisomal and mitochondrial
division factor 2		 0.63 0.32 -0.32
43 AT5G44560 SNF7 family protein VPS2.2 -0.63 0.33 -0.31
44 AT3G18070 beta glucosidase 43 beta glucosidase 43 -0.63 0.33 -0.32
45 AT4G25470 C-repeat/DRE binding factor 2 ATCBF2, C-repeat/DRE binding
factor 2, DRE/CRT-BINDING PROTEIN
1C, FREEZING TOLERANCE QTL 4		 -0.63 0.34 -0.29
46 AT5G18950 Tetratricopeptide repeat (TPR)-like superfamily protein 0.63 0.31 -0.32
47 AT5G65170 VQ motif-containing protein 0.63 0.3 -0.32
48 AT1G16460 rhodanese homologue 2 ARABIDOPSIS THALIANA
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
SULFURTRANSFERASE 2,
SULFURTRANSFERASE 2		 -0.63 0.33 -0.3
49 AT4G09760 Protein kinase superfamily protein -0.63 0.32 -0.32
50 AT2G28305 Putative lysine decarboxylase family protein ATLOG1, LONELY GUY 1 -0.63 0.31 -0.29
51 AT1G07160 Protein phosphatase 2C family protein 0.63 0.32 -0.31
52 AT5G10320 unknown protein; Has 54 Blast hits to 53 proteins in 19
species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0;
Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.29 -0.31
53 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.62 0.3 -0.33
54 AT4G24460 CRT (chloroquine-resistance transporter)-like transporter 2 CRT (chloroquine-resistance
transporter)-like transporter 2		 -0.62 0.32 -0.34
55 AT3G32940 RNA-binding KH domain-containing protein 0.62 0.35 -0.31
56 AT3G42250 transposable element gene -0.62 0.34 -0.33
57 AT4G08310 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Histone chaperone domain CHZ (InterPro:IPR019098); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins
in 1618 species: Archae - 142; Bacteria - 4400; Metazoa -
24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other
Eukaryotes - 15245 (source: NCBI BLink).		 -0.62 0.3 -0.31
58 AT4G20420 Tapetum specific protein TAP35/TAP44 -0.62 0.31 -0.33
59 AT1G69400 Transducin/WD40 repeat-like superfamily protein -0.62 0.3 -0.31
60 AT2G18960 H(+)-ATPase 1 H(+)-ATPase 1, H(+)-ATPase 1, OPEN
STOMATA 2, PLASMA MEMBRANE PROTON
ATPASE		 0.62 0.3 -0.31
61 AT1G17210 IAP-like protein 1 ARABIDOPSIS IAP-LIKE PROTEIN,
IAP-like protein 1		 0.61 0.3 -0.32
62 AT2G14810 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.61 0.33 -0.31
63 AT1G64290 F-box protein-related -0.61 0.32 -0.31
64 AT1G56270 unknown protein; Has 38 Blast hits to 38 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.32 -0.31
65 AT5G08200 peptidoglycan-binding LysM domain-containing protein 0.61 0.31 -0.34
66 AT1G13290 C2H2-like zinc finger protein DEFECTIVELY ORGANIZED TRIBUTARIES
5, WIP domain protein 6		 0.61 0.32 -0.31
67 AT2G38970 Zinc finger (C3HC4-type RING finger) family protein -0.61 0.3 -0.32
68 AT2G42100 Actin-like ATPase superfamily protein -0.61 0.32 -0.32
69 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.6 0.32 -0.32
70 AT5G11040 TRS120 AtTRS120, TRS120 0.6 0.32 -0.32
71 AT1G30515 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.32 -0.34
72 AT5G56620 NAC domain containing protein 99 NAC domain containing protein 99,
NAC domain containing protein 99		 -0.6 0.29 -0.32
73 AT5G19900 PRLI-interacting factor, putative 0.6 0.29 -0.33
74 AT2G16840 transposable element gene -0.6 0.31 -0.29
75 AT4G34500 Protein kinase superfamily protein -0.6 0.34 -0.32
76 AT3G62160 HXXXD-type acyl-transferase family protein -0.6 0.33 -0.32
77 AT5G51320 transposable element gene -0.6 0.32 -0.31
78 AT5G25570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.6 0.32 -0.31
79 ATMG01020 hypothetical protein ORF153B 0.6 0.31 -0.32
80 AT5G64160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.6 0.3 -0.31
81 AT5G40680 Galactose oxidase/kelch repeat superfamily protein 0.6 0.31 -0.29
82 AT2G19390 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits
to 188 proteins in 60 species: Archae - 0; Bacteria - 11;
Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other
Eukaryotes - 41 (source: NCBI BLink).		 0.6 0.3 -0.31
83 AT3G13062 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.6 0.29 -0.31
84 AT5G60320 Concanavalin A-like lectin protein kinase family protein -0.59 0.3 -0.32
85 AT2G31970 DNA repair-recombination protein (RAD50) ATRAD50, RAD50 0.59 0.3 -0.33
86 AT1G73540 nudix hydrolase homolog 21 nudix hydrolase homolog 21, nudix
hydrolase homolog 21		 -0.59 0.31 -0.33
87 AT2G13430 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.59 0.32 -0.32
88 AT3G24360 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.59 0.3 -0.31
89 AT5G61600 ethylene response factor 104 ethylene response factor 104 -0.59 0.34 -0.31
90 AT3G14860 NHL domain-containing protein 0.59 0.3 -0.3
91 AT4G10280 RmlC-like cupins superfamily protein -0.59 0.31 -0.33
92 AT1G78950 Terpenoid cyclases family protein -0.59 0.31 -0.31
93 AT4G23330 BEST Arabidopsis thaliana protein match is: eukaryotic
translation initiation factor 3A (TAIR:AT4G11420.1); Has 63
Blast hits to 55 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.33 -0.31
94 AT1G50470 F-box associated ubiquitination effector family protein 0.58 0.29 -0.34
95 AT1G35750 pumilio 10 pumilio 10, pumilio 10 -0.58 0.31 -0.32
96 AT5G57200 ENTH/ANTH/VHS superfamily protein 0.58 0.32 -0.3
97 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.58 0.3 -0.33
98 AT5G46320 MADS-box family protein -0.58 0.32 -0.31
99 AT2G02410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF901 (InterPro:IPR010298); Has 1151
Blast hits to 1151 proteins in 597 species: Archae - 0;
Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).		 -0.58 0.3 -0.32
100 AT4G36630 Vacuolar sorting protein 39 EMBRYO DEFECTIVE 2754 0.58 0.32 -0.32
101 AT4G39320 microtubule-associated protein-related -0.58 0.33 -0.32
102 AT1G03890 RmlC-like cupins superfamily protein 0.58 0.31 -0.29
103 AT5G49700 Predicted AT-hook DNA-binding family protein 0.58 0.31 -0.32
104 AT1G80740 chromomethylase 1 chromomethylase 1, DNA
METHYLTRANSFERASE 4		 -0.58 0.31 -0.32
105 AT4G27280 Calcium-binding EF-hand family protein -0.58 0.32 -0.3
106 AT3G15220 Protein kinase superfamily protein -0.58 0.31 -0.33
107 AT3G60860 SEC7-like guanine nucleotide exchange family protein 0.58 0.33 -0.33
108 AT4G03670 transposable element gene -0.58 0.31 -0.32
109 AT2G14230 transposable element gene -0.58 0.33 -0.33
110 AT5G18990 Pectin lyase-like superfamily protein -0.57 0.3 -0.33
111 AT3G44410 pseudogene, disease resistence protein, putative, similar
to disease resistance protein RPP1-WsB (Arabidopsis
thaliana) gi|3860165|gb|AAC72978		 -0.57 0.32 -0.29
112 AT5G62320 myb domain protein 99 myb domain protein 99, ATMYBCU15,
myb domain protein 99		 0.57 0.32 -0.3
113 AT1G02450 NIM1-interacting 1 NIMIN-1, NIM1-interacting 1 -0.57 0.34 -0.34
114 AT5G40300 Uncharacterised protein family (UPF0497) 0.57 0.32 -0.31
115 AT2G47120 NAD(P)-binding Rossmann-fold superfamily protein -0.57 0.32 -0.32
116 AT1G29110 Cysteine proteinases superfamily protein 0.57 0.34 -0.34
117 AT2G34580 CONTAINS InterPro DOMAIN/s: Herpesvirus UL139,
cytomegalovirus (InterPro:IPR021042); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.57 0.33 -0.31
118 AT4G19570 Chaperone DnaJ-domain superfamily protein -0.57 0.32 -0.3
119 AT5G33350 pseudogene, similar to P0406H10.5, nucleoid DNA-binding
protein cnd41, chloroplast - Nicotiana tabacum, PIR:T01996;
blastp match of 37% identity and 1.5e-57 P-value to
GP|9711879|dbj|BAB07973.1||AP002524 P0406H10.5 {Oryza
sativa (japonica cultivar-group)}		 -0.57 0.34 -0.3
120 AT5G47090 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2052, coiled-coil (InterPro:IPR018613);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 0.57 0.31 -0.32
121 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 -0.57 0.32 -0.33
122 AT5G19240 Glycoprotein membrane precursor GPI-anchored -0.57 0.33 -0.33
123 AT4G28900 transposable element gene -0.57 0.32 -0.32
124 AT3G28720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in
85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi
- 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732
(source: NCBI BLink).		 0.57 0.32 -0.32
125 AT1G61940 tubby like protein 4 tubby like protein 4, tubby like
protein 4		 0.57 0.31 -0.31
126 AT2G07110 BEST Arabidopsis thaliana protein match is: Ribosomal
protein S5 domain 2-like superfamily protein
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source:
NCBI BLink).		 -0.57 0.32 -0.33
127 AT5G35870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G04480.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.56 0.31 -0.3
128 AT5G36960 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.56 0.32 -0.29
129 AT2G02640 Cysteine/Histidine-rich C1 domain family protein -0.56 0.32 -0.31
130 AT5G37980 Zinc-binding dehydrogenase family protein -0.56 0.32 -0.3
131 AT2G10780 transposable element gene -0.56 0.33 -0.34
132 AT3G62180 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.56 0.29 -0.3
133 AT5G27810 MADS-box transcription factor family protein -0.56 0.32 -0.32
134 AT1G32600 F-box associated ubiquitination effector family protein -0.56 0.3 -0.34
135 AT1G51700 DOF zinc finger protein 1 DOF zinc finger protein 1, DOF
zinc finger protein 1		 -0.56 0.32 -0.3
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
136 C0145 Maltotetraose - Maltotetraose starch degradation II 0.73 0.45 -0.46 C0145
137 C0126 Isorhamnetin-dirhamnoside - - - 0.71 0.44 -0.47