AT4G28990 : -
Query Information
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AGICode AT4G28990
Description RNA-binding protein-related
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G28990 RNA-binding protein-related 1 0.31 -0.33
2 AT2G34780 maternal effect embryo arrest 22 EMBRYO DEFECTIVE 1611, MATERNAL
EFFECT EMBRYO ARREST 22		 0.82 0.33 -0.32
3 AT1G03530 nuclear assembly factor 1 ATNAF1, nuclear assembly factor 1 0.81 0.33 -0.3
4 AT5G16040 Regulator of chromosome condensation (RCC1) family protein 0.8 0.32 -0.32
5 AT3G14890 phosphoesterase 0.79 0.31 -0.32
6 AT1G13030 sphere organelles protein-related 0.79 0.33 -0.3
7 AT5G12200 pyrimidine 2 pyrimidine 2 -0.78 0.29 -0.31
8 AT1G72320 pumilio 23 pumilio 23, pumilio 23 0.78 0.32 -0.32
9 AT3G58510 DEA(D/H)-box RNA helicase family protein 0.78 0.31 -0.32
10 AT3G02760 Class II aaRS and biotin synthetases superfamily protein 0.77 0.31 -0.32
11 AT2G36950 Heavy metal transport/detoxification superfamily protein -0.77 0.3 -0.3
12 AT1G16280 RNA helicase 36 Arabidopsis thaliana RNA helicase
36, RNA helicase 36, SLOW WALKER 3		 0.77 0.3 -0.31
13 AT4G10760 mRNAadenosine methylase EMBRYO DEFECTIVE 1706,
mRNAadenosine methylase		 0.76 0.31 -0.3
14 AT5G05210 Surfeit locus protein 6 0.76 0.31 -0.31
15 AT3G21110 purin 7 ATPURC, purin 7, PURIN C 0.76 0.31 -0.29
16 AT1G56700 Peptidase C15, pyroglutamyl peptidase I-like -0.76 0.3 -0.31
17 AT4G02400 U3 ribonucleoprotein (Utp) family protein 0.76 0.34 -0.31
18 AT1G26190 Phosphoribulokinase / Uridine kinase family 0.76 0.3 -0.32
19 AT3G11880 Protein of unknown function DUF2359, transmembrane -0.75 0.3 -0.32
20 AT1G20560 acyl activating enzyme 1 acyl activating enzyme 1 -0.75 0.3 -0.3
21 AT3G02530 TCP-1/cpn60 chaperonin family protein 0.75 0.3 -0.34
22 AT2G37560 origin recognition complex second largest subunit 2 ORIGIN RECOGNITION COMPLEX SECOND
LARGEST SUBUNIT 2, origin
recognition complex second largest
subunit 2		 0.75 0.32 -0.32
23 AT4G28200 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA
processing; LOCATED IN: intracellular; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT
helix (InterPro:IPR003107), U3 small nucleolar
RNA-associated protein 6 (InterPro:IPR013949); Has 492
Blast hits to 480 proteins in 206 species: Archae - 0;
Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60;
Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).		 0.75 0.33 -0.3
24 AT2G13540 ARM repeat superfamily protein ABA HYPERSENSITIVE 1, ATCBP80,
CAP-BINDING PROTEIN 80, ENSALADA		 0.75 0.31 -0.33
25 AT5G27350 Major facilitator superfamily protein SFP1 -0.74 0.32 -0.31
26 AT4G14300 RNA-binding (RRM/RBD/RNP motifs) family protein 0.74 0.31 -0.33
27 AT5G19590 Protein of unknown function, DUF538 -0.74 0.29 -0.33
28 AT1G10490 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.74 0.33 -0.34
29 AT4G37130 hydroxyproline-rich glycoprotein family protein 0.74 0.29 -0.33
30 AT5G56020 Got1/Sft2-like vescicle transport protein family -0.74 0.32 -0.31
31 AT1G67560 PLAT/LH2 domain-containing lipoxygenase family protein Arabidopsis thaliana lipoxygenase
6, lipoxygenase 6		 -0.73 0.3 -0.32
32 AT4G35750 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 -0.73 0.33 -0.31
33 AT3G17940 Galactose mutarotase-like superfamily protein -0.73 0.32 -0.31
34 AT5G46280 Minichromosome maintenance (MCM2/3/5) family protein MINICHROMOSOME MAINTENANCE 3 0.73 0.29 -0.3
35 AT4G37210 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.32 -0.33
36 AT1G30360 Early-responsive to dehydration stress protein (ERD4) early-responsive to dehydration 4 0.73 0.3 -0.31
37 AT2G47250 RNA helicase family protein 0.73 0.3 -0.3
38 AT2G40430 CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687),
Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has
709 Blast hits to 643 proteins in 201 species: Archae - 0;
Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45;
Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).		 0.72 0.3 -0.31
39 AT1G78670 gamma-glutamyl hydrolase 3 gamma-glutamyl hydrolase 3,
gamma-glutamyl hydrolase 3		 -0.72 0.31 -0.33
40 AT4G16650 O-fucosyltransferase family protein 0.72 0.31 -0.31
41 AT2G31010 Protein kinase superfamily protein 0.72 0.33 -0.32
42 AT1G48650 DEA(D/H)-box RNA helicase family protein 0.72 0.36 -0.32
43 AT4G32420 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.72 0.33 -0.32
44 AT3G28050 nodulin MtN21 /EamA-like transporter family protein -0.72 0.3 -0.31
45 AT5G56740 histone acetyltransferase of the GNAT family 2 HAC07, HAC7, HAG02, histone
acetyltransferase of the GNAT
family 2		 0.72 0.3 -0.33
46 AT1G77420 alpha/beta-Hydrolases superfamily protein -0.72 0.31 -0.31
47 AT1G75990 PAM domain (PCI/PINT associated module) protein 0.72 0.32 -0.33
48 AT1G05910 cell division cycle protein 48-related / CDC48-related 0.72 0.31 -0.34
49 AT3G62010 unknown protein; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; Has 553 Blast hits to 216 proteins in 93
species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi -
58; Plants - 108; Viruses - 0; Other Eukaryotes - 70
(source: NCBI BLink).		 -0.72 0.3 -0.29
50 AT1G05060 unknown protein; Has 34 Blast hits to 34 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.71 0.29 -0.3
51 AT2G31010 Protein kinase superfamily protein 0.71 0.32 -0.33
52 AT5G45350 proline-rich family protein -0.71 0.31 -0.31
53 AT4G33400 Vacuolar import/degradation, Vid27-related protein 0.71 0.33 -0.3
54 AT5G42850 Thioredoxin superfamily protein -0.71 0.31 -0.29
55 AT3G04470 Ankyrin repeat family protein 0.71 0.31 -0.36
56 AT3G12280 retinoblastoma-related 1 RETINOBLASTOMA-RELATED PROTEIN 1,
RB, RETINOBLASTOMA 1,
RETINOBLASTOMA-RELATED,
retinoblastoma-related 1		 0.71 0.31 -0.32
57 AT5G63630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.71 0.3 -0.28
58 AT5G28740 Tetratricopeptide repeat (TPR)-like superfamily protein 0.7 0.31 -0.3
59 AT1G36310 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.7 0.3 -0.3
60 AT1G09350 galactinol synthase 3 galactinol synthase 3, galactinol
synthase 3		 0.7 0.32 -0.31
61 AT1G47530 MATE efflux family protein 0.7 0.31 -0.32
62 AT3G17250 Protein phosphatase 2C family protein -0.7 0.31 -0.3
63 AT5G13480 Transducin/WD40 repeat-like superfamily protein FY 0.7 0.32 -0.31
64 AT3G14920 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A
protein		 -0.7 0.3 -0.33
65 AT1G53035 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.33 -0.31
66 AT1G78650 DNA-directed DNA polymerases POLD3 0.69 0.32 -0.32
67 AT2G22690 zinc ion binding -0.69 0.32 -0.33
68 AT3G13570 SC35-like splicing factor 30A SC35-like splicing factor 30A,
SC35-like splicing factor 30A		 0.69 0.31 -0.33
69 AT5G19120 Eukaryotic aspartyl protease family protein -0.69 0.33 -0.3
70 AT5G40390 Raffinose synthase family protein raffinose synthase 5, seed
imbibition 1-like		 0.69 0.32 -0.3
71 AT2G15230 lipase 1 lipase 1, lipase 1 -0.69 0.31 -0.31
72 AT1G22040 Galactose oxidase/kelch repeat superfamily protein -0.69 0.3 -0.31
73 AT1G12370 photolyase 1 photolyase 1, UV RESISTANCE 2 0.69 0.33 -0.33
74 AT1G61010 cleavage and polyadenylation specificity factor 73-I cleavage and polyadenylation
specificity factor 73-I		 0.69 0.29 -0.35
75 AT3G49660 Transducin/WD40 repeat-like superfamily protein AtWDR5a, human WDR5 (WD40 repeat)
homolog a		 0.69 0.29 -0.32
76 AT3G11230 Yippee family putative zinc-binding protein -0.69 0.3 -0.31
77 AT2G17220 Protein kinase superfamily protein kinase 3 -0.68 0.33 -0.31
78 AT1G68440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits
to 86 proteins in 29 species: Archae - 0; Bacteria - 6;
Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other
Eukaryotes - 18 (source: NCBI BLink).		 -0.68 0.33 -0.32
79 AT1G55850 cellulose synthase like E1 ATCSLE1, cellulose synthase like
E1		 -0.68 0.32 -0.33
80 AT2G40780 Nucleic acid-binding, OB-fold-like protein 0.68 0.31 -0.31
81 AT5G09860 nuclear matrix protein-related AtHPR1, AtTHO1, HPR1, THO1 0.68 0.32 -0.32
82 AT3G15760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.68 0.31 -0.33
83 AT1G01490 Heavy metal transport/detoxification superfamily protein -0.68 0.32 -0.34
84 AT3G53500 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32		 0.68 0.31 -0.33
85 AT5G07860 HXXXD-type acyl-transferase family protein -0.67 0.31 -0.32
86 AT1G07230 non-specific phospholipase C1 non-specific phospholipase C1 -0.67 0.3 -0.3
87 AT3G26450 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.67 0.34 -0.34
88 AT5G10960 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.67 0.31 -0.32
89 AT1G80180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G15400.3); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.3 -0.32
90 AT4G23410 tetraspanin5 tetraspanin5 -0.66 0.3 -0.31
91 AT5G27840 Calcineurin-like metallo-phosphoesterase superfamily
protein		 TOPP8 -0.66 0.33 -0.31
92 AT1G14120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.31 -0.31
93 AT5G23810 amino acid permease 7 amino acid permease 7 -0.65 0.3 -0.32
94 AT1G10150 Carbohydrate-binding protein -0.65 0.3 -0.32
95 AT3G15070 RING/U-box superfamily protein -0.65 0.32 -0.33
96 AT1G27030 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G27020.1); Has 504 Blast hits
to 502 proteins in 169 species: Archae - 0; Bacteria - 299;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 138 (source: NCBI BLink).		 -0.64 0.3 -0.31
97 AT4G35220 Cyclase family protein -0.64 0.3 -0.3
98 AT3G01360 Family of unknown function (DUF716) -0.64 0.34 -0.3
99 AT3G54480 SKP1/ASK-interacting protein 5 SKP1/ASK-interacting protein 5,
SKP5		 -0.64 0.32 -0.32
100 AT4G11360 RING-H2 finger A1B RING-H2 finger A1B -0.64 0.3 -0.31
101 AT3G10040 sequence-specific DNA binding transcription factors -0.64 0.32 -0.31
102 AT4G16770 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.63 0.31 -0.32
103 AT1G17340 Phosphoinositide phosphatase family protein -0.63 0.33 -0.32
104 AT4G03960 Phosphotyrosine protein phosphatases superfamily protein AtPFA-DSP4, plant and fungi
atypical dual-specificity
phosphatase 4		 -0.63 0.33 -0.31
105 AT5G19860 Protein of unknown function, DUF538 -0.63 0.33 -0.3
106 AT4G04610 APS reductase 1 APR, APS reductase 1, ATAPR1, PAPS
REDUCTASE HOMOLOG 19		 -0.63 0.31 -0.3
107 AT2G34690 Glycolipid transfer protein (GLTP) family protein ACCELERATED CELL DEATH 11 -0.63 0.32 -0.3