AT4G29080 : indole-3-acetic acid inducible 27
Query Information
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AGICode AT4G29080
Description phytochrome-associated protein 2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G29080 phytochrome-associated protein 2 indole-3-acetic acid inducible 27,
phytochrome-associated protein 2		 1 0.31 -0.31
2 AT1G05010 ethylene-forming enzyme ethylene forming enzyme, EAT1,
ethylene-forming enzyme		 -0.81 0.32 -0.35
3 AT3G21500 1-deoxy-D-xylulose 5-phosphate synthase 1 1-deoxy-D-xylulose 5-phosphate
synthase 1		 -0.8 0.32 -0.31
4 AT1G28110 serine carboxypeptidase-like 45 serine carboxypeptidase-like 45 0.8 0.32 -0.31
5 AT5G60620 glycerol-3-phosphate acyltransferase 9 glycerol-3-phosphate
acyltransferase 9		 -0.79 0.3 -0.32
6 AT5G07810 SNF2 domain-containing protein / helicase domain-containing
protein / HNH endonuclease domain-containing protein		 0.79 0.32 -0.31
7 AT5G56580 MAP kinase kinase 6 ARABIDOPSIS NQK1, ARABIDOPSIS
THALIANA MAP KINASE KINASE 6, MAP
kinase kinase 6		 0.79 0.31 -0.31
8 AT2G36570 Leucine-rich repeat protein kinase family protein 0.78 0.32 -0.32
9 AT3G15660 glutaredoxin 4 A. THALIANA GLUTAREDOXIN 4,
glutaredoxin 4		 -0.78 0.33 -0.32
10 AT5G59420 OSBP(oxysterol binding protein)-related protein 3C OSBP(oxysterol binding
protein)-related protein 3C		 -0.78 0.31 -0.3
11 AT5G06260 TLD-domain containing nucleolar protein -0.77 0.32 -0.31
12 AT3G27430 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 PBB1 -0.77 0.32 -0.33
13 AT2G16510 ATPase, F0/V0 complex, subunit C protein -0.77 0.32 -0.32
14 AT2G42680 multiprotein bridging factor 1A ARABIDOPSIS THALIANA MULTIPROTEIN
BRIDGING FACTOR 1A, multiprotein
bridging factor 1A		 -0.77 0.3 -0.31
15 AT2G21270 ubiquitin fusion degradation 1 ubiquitin fusion degradation 1 -0.77 0.33 -0.32
16 AT5G52240 membrane steroid binding protein 1 ARABIDOPSIS THALIANA
MEMBRANE-ASSOCIATED PROGESTERONE
BINDING PROTEIN 5, ATMP1, membrane
steroid binding protein 1		 -0.76 0.31 -0.31
17 AT1G01820 peroxin 11c peroxin 11c -0.76 0.32 -0.32
18 AT4G20330 Transcription initiation factor TFIIE, beta subunit -0.76 0.31 -0.3
19 AT1G06200 Peptidase S24/S26A/S26B/S26C family protein -0.75 0.33 -0.31
20 AT3G48890 membrane-associated progesterone binding protein 3 ARABIDOPSIS THALIANA
MEMBRANE-ASSOCIATED PROGESTERONE
BINDING PROTEIN 3, ATMP2,
membrane-associated progesterone
binding protein 3, MEMBRANE
STEROID BINDING PROTEIN 2		 -0.75 0.32 -0.29
21 AT5G49890 chloride channel C ATCLC-C, chloride channel C -0.75 0.32 -0.32
22 AT5G11510 myb domain protein 3r-4 myb domain protein 3R4, myb domain
protein 3r-4		 0.75 0.31 -0.35
23 AT1G32790 CTC-interacting domain 11 CTC-interacting domain 11 -0.75 0.32 -0.34
24 AT5G43280 delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
DELTA(3,5),DELTA(2,4)-DIENOYL-COA
ISOMERASE 1		 -0.75 0.34 -0.33
25 AT3G03990 alpha/beta-Hydrolases superfamily protein -0.75 0.31 -0.31
26 AT3G10920 manganese superoxide dismutase 1 ARABIDOPSIS MANGANESE SUPEROXIDE
DISMUTASE 1, MATERNAL EFFECT
EMBRYO ARREST 33, manganese
superoxide dismutase 1		 -0.75 0.3 -0.29
27 AT1G53570 mitogen-activated protein kinase kinase kinase 3 mitogen-activated protein kinase
kinase kinase 3, MAP KINASE KINASE
KINASE 3		 -0.75 0.31 -0.31
28 AT3G54840 Ras-related small GTP-binding family protein ARA-6, ARA6, ATRAB5C, ATRABF1,
RABF1		 -0.75 0.32 -0.33
29 AT5G43990 SET-domain containing protein lysine methyltransferase
family protein		 SET DOMAIN PROTEIN 18, SUVR2 0.75 0.32 -0.3
30 AT3G12620 Protein phosphatase 2C family protein -0.75 0.32 -0.32
31 AT5G62710 Leucine-rich repeat protein kinase family protein 0.74 0.33 -0.31
32 AT3G54720 Peptidase M28 family protein ALTERED MERISTEM PROGRAM 1,
CONSTITUTIVE MORPHOGENESIS 2,
HAUPTLING, Multifolia, PRIMORDIA
TIMING		 0.74 0.33 -0.29
33 AT3G24200 FAD/NAD(P)-binding oxidoreductase family protein -0.74 0.33 -0.32
34 AT1G53320 tubby like protein 7 tubby like protein 7, tubby like
protein 7		 -0.74 0.31 -0.31
35 AT5G64440 fatty acid amide hydrolase fatty acid amide hydrolase, fatty
acid amide hydrolase		 -0.74 0.31 -0.31
36 AT3G11780 MD-2-related lipid recognition domain-containing protein /
ML domain-containing protein		 -0.74 0.31 -0.31
37 AT3G47810 Calcineurin-like metallo-phosphoesterase superfamily
protein		 ATVPS29, MAIGO 1, VACUOLAR PROTEIN
SORTING 29		 -0.74 0.33 -0.31
38 AT5G11680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, plasma
membrane; EXPRESSED IN: 26 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
WW-domain-binding protein (InterPro:IPR018826); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.74 0.3 -0.31
39 AT5G43320 casein kinase I-like 8 casein kinase I-like 8 -0.74 0.32 -0.33
40 AT4G02290 glycosyl hydrolase 9B13 glycosyl hydrolase 9B13, glycosyl
hydrolase 9B13		 0.74 0.3 -0.32
41 AT1G16180 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 -0.74 0.32 -0.32
42 AT5G54500 flavodoxin-like quinone reductase 1 flavodoxin-like quinone reductase
1		 -0.74 0.34 -0.31
43 AT4G35830 aconitase 1 aconitase 1 -0.73 0.31 -0.3
44 AT4G13360 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.73 0.31 -0.33
45 AT5G11520 aspartate aminotransferase 3 aspartate aminotransferase 3,
YELLOW-LEAF-SPECIFIC GENE 4		 -0.73 0.31 -0.3
46 AT5G11960 Protein of unknown function (DUF803) -0.73 0.32 -0.3
47 AT5G04170 Calcium-binding EF-hand family protein -0.73 0.32 -0.31
48 AT4G23710 vacuolar ATP synthase subunit G2 vacuolar ATP synthase subunit G2,
VACUOLAR ATP SYNTHASE SUBUNIT G2,
VHA-G2		 -0.73 0.32 -0.34
49 AT4G15470 Bax inhibitor-1 family protein -0.72 0.31 -0.3
50 AT2G25610 ATPase, F0/V0 complex, subunit C protein -0.72 0.32 -0.31
51 AT3G02150 plastid transcription factor 1 plastid transcription factor 1,
TEOSINTE BRANCHED1, CYCLOIDEA AND
PCF TRANSCRIPTION FACTOR 13, TFPD		 -0.72 0.32 -0.31
52 AT5G12890 UDP-Glycosyltransferase superfamily protein -0.72 0.34 -0.31
53 AT2G22860 phytosulfokine 2 precursor phytosulfokine 2 precursor,
phytosulfokine 2 precursor		 -0.72 0.31 -0.31
54 AT2G26180 IQ-domain 6 IQ-domain 6 0.72 0.33 -0.3
55 AT3G03720 cationic amino acid transporter 4 cationic amino acid transporter 4 -0.72 0.31 -0.32
56 AT1G76060 LYR family of Fe/S cluster biogenesis protein EMBRYO DEFECTIVE 1793 -0.72 0.31 -0.31
57 AT3G55140 Pectin lyase-like superfamily protein -0.72 0.31 -0.3
58 AT1G17080 Ribosomal protein L18ae family -0.72 0.31 -0.32
59 AT5G45130 RAB homolog 1 ARABIDOPSIS RAB HOMOLOG F2A,
ATRAB5A, ATRABF2A, RAB HOMOLOG
F2A, RAB5A, RABF2A, RAB homolog 1		 -0.72 0.34 -0.31
60 AT5G03660 Family of unknown function (DUF662) -0.71 0.31 -0.31
61 AT4G24550 Clathrin adaptor complexes medium subunit family protein -0.71 0.33 -0.3
62 AT4G32530 ATPase, F0/V0 complex, subunit C protein -0.71 0.32 -0.3
63 AT4G21160 Calcium-dependent ARF-type GTPase activating protein family ARF-GAP domain 12, ZAC -0.71 0.32 -0.32
64 AT5G58300 Leucine-rich repeat protein kinase family protein 0.71 0.33 -0.32
65 AT3G51720 Plant protein of unknown function (DUF827) 0.71 0.32 -0.32
66 AT2G35010 thioredoxin O1 thioredoxin O1, thioredoxin O1 -0.71 0.32 -0.33
67 AT4G05160 AMP-dependent synthetase and ligase family protein -0.71 0.29 -0.33
68 AT1G64740 alpha-1 tubulin alpha-1 tubulin -0.71 0.33 -0.32
69 AT1G09430 ATP-citrate lyase A-3 ATP-citrate lyase A-3 -0.71 0.3 -0.32
70 AT1G72540 Protein kinase superfamily protein -0.71 0.32 -0.31
71 AT5G32440 Ubiquitin system component Cue protein -0.71 0.32 -0.3
72 AT1G66250 O-Glycosyl hydrolases family 17 protein 0.71 0.32 -0.32
73 AT3G45310 Cysteine proteinases superfamily protein -0.7 0.31 -0.32
74 AT1G55840 Sec14p-like phosphatidylinositol transfer family protein -0.7 0.34 -0.31
75 AT3G18430 Calcium-binding EF-hand family protein -0.7 0.32 -0.32
76 AT3G18820 RAB GTPase homolog G3F RAB GTPase homolog G3F, ATRABG3F,
RAB71, RAB7B, RAB GTPase homolog
G3F, RABG3F		 -0.7 0.32 -0.33
77 AT4G10140 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF2062 (InterPro:IPR018639); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G33490.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.7 0.33 -0.32
78 AT4G24990 Ubiquitin family protein ATGP4 -0.7 0.32 -0.34
79 AT3G52560 ubiquitin E2 variant 1D-4 MMS2 ZWEI HOMOLOGUE 4, UBIQUITIN
E2 VARIANT 1D, ubiquitin E2
variant 1D-4		 -0.7 0.29 -0.31
80 AT3G54620 basic leucine zipper 25 ARABIDOPSIS THALIANA BASIC LEUCINE
ZIPPER 25, basic leucine zipper
25, BASIC LEUCINE ZIPPER O2
HOMOLOG 4		 -0.7 0.31 -0.34
81 AT3G53930 Protein kinase superfamily protein -0.7 0.32 -0.31
82 AT1G36050 Endoplasmic reticulum vesicle transporter protein -0.7 0.33 -0.3
83 AT3G01970 WRKY DNA-binding protein 45 WRKY DNA-BINDING PROTEIN 45, WRKY
DNA-binding protein 45		 -0.7 0.33 -0.32
84 AT4G24790 AAA-type ATPase family protein 0.7 0.32 -0.29
85 AT5G67500 voltage dependent anion channel 2 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 2, voltage
dependent anion channel 2		 -0.7 0.3 -0.29
86 AT2G32260 phosphorylcholine cytidylyltransferase ATCCT1, phosphorylcholine
cytidylyltransferase		 -0.7 0.33 -0.31
87 AT4G37120 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 2 -0.7 0.33 -0.33
88 AT5G42980 thioredoxin 3 thioredoxin H-type 3, thioredoxin
3, ATTRXH3, thioredoxin 3,
THIOREDOXIN H3		 -0.7 0.31 -0.32
89 AT4G17830 Peptidase M20/M25/M40 family protein -0.7 0.3 -0.32
90 AT4G39520 GTP-binding protein-related -0.7 0.29 -0.3
91 AT1G16070 tubby like protein 8 tubby like protein 8, tubby like
protein 8		 0.7 0.3 -0.32
92 AT2G19200 unknown protein 0.69 0.31 -0.32
93 AT5G40580 20S proteasome beta subunit PBB2 20S proteasome beta subunit PBB2 -0.69 0.29 -0.33
94 AT5G12210 RAB geranylgeranyl transferase beta subunit 1 RAB geranylgeranyl transferase
beta subunit 1, RAB geranylgeranyl
transferase beta subunit 1		 -0.69 0.31 -0.32
95 AT4G28950 RHO-related protein from plants 9 Arabidopsis RAC-like 7, ATRAC7,
ATROP9, RAC7, RHO-related protein
from plants 9		 0.69 0.33 -0.31
96 AT5G66120 3-dehydroquinate synthase, putative -0.69 0.32 -0.31
97 AT3G56170 Ca-2+ dependent nuclease Ca-2+ dependent nuclease -0.69 0.32 -0.33
98 AT1G28280 VQ motif-containing protein -0.69 0.33 -0.32
99 AT2G34810 FAD-binding Berberine family protein -0.69 0.32 -0.32
100 AT1G23780 F-box family protein -0.69 0.35 -0.3
101 AT5G20540 BREVIS RADIX-like 4 BREVIS RADIX-like 4, BRX-LIKE4,
BREVIS RADIX-like 4		 0.69 0.31 -0.3
102 AT1G26830 cullin 3 cullin 3, cullin 3A, cullin 3,
cullin 3A		 -0.69 0.31 -0.3
103 AT1G60390 polygalacturonase 1 polygalacturonase 1 0.69 0.34 -0.32
104 AT5G63870 serine/threonine phosphatase 7 ATPP7, serine/threonine
phosphatase 7		 -0.69 0.32 -0.32
105 AT5G65700 Leucine-rich receptor-like protein kinase family protein BARELY ANY MERISTEM 1 0.69 0.33 -0.32
106 AT3G42050 vacuolar ATP synthase subunit H family protein -0.69 0.33 -0.32
107 AT5G58020 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF602 (InterPro:IPR006735); Has 385 Blast
hits to 385 proteins in 189 species: Archae - 0; Bacteria -
0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0;
Other Eukaryotes - 65 (source: NCBI BLink).		 -0.69 0.35 -0.32
108 AT3G54300 vesicle-associated membrane protein 727 vesicle-associated membrane
protein 727, VAMP727,
vesicle-associated membrane
protein 727		 -0.69 0.3 -0.31
109 AT4G38930 Ubiquitin fusion degradation UFD1 family protein -0.69 0.31 -0.3
110 AT5G64560 magnesium transporter 9 ATMGT9, magnesium transporter 9,
MRS2-2		 -0.69 0.34 -0.34
111 AT2G34680 Outer arm dynein light chain 1 protein AUXIN-INDUCED IN ROOT CULTURES 9 0.69 0.32 -0.32
112 AT2G24360 Protein kinase superfamily protein -0.69 0.31 -0.32
113 AT1G49520 SWIB complex BAF60b domain-containing protein -0.69 0.29 -0.32
114 AT5G16880 Target of Myb protein 1 -0.69 0.32 -0.3
115 AT5G59840 Ras-related small GTP-binding family protein -0.69 0.31 -0.32
116 AT2G23530 Zinc-finger domain of monoamine-oxidase A repressor R1 0.68 0.32 -0.32
117 AT2G01910 Microtubule associated protein (MAP65/ASE1) family protein ATMAP65-6, MAP65-6 0.68 0.32 -0.3
118 AT2G44830 Protein kinase superfamily protein 0.68 0.31 -0.32
119 AT5G19530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ACAULIS 5 0.68 0.33 -0.32
120 AT5G03680 Duplicated homeodomain-like superfamily protein PETAL LOSS 0.67 0.32 -0.33
121 AT1G21090 Cupredoxin superfamily protein 0.67 0.33 -0.32
122 AT4G35420 dihydroflavonol 4-reductase-like1 dihydroflavonol 4-reductase-like1,
tetraketide alpha-pyrone reductase
1		 0.67 0.32 -0.33
123 AT4G39790 Protein of unknown function (DUF630 and DUF632) 0.67 0.32 -0.32
124 AT2G28620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.67 0.31 -0.3
125 AT1G28400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins
in 668 species: Archae - 72; Bacteria - 1460; Metazoa -
1191; Fungi - 1038; Plants - 174; Viruses - 64; Other
Eukaryotes - 41375 (source: NCBI BLink).		 0.67 0.33 -0.33
126 AT1G30515 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.66 0.32 -0.29
127 AT2G19930 RNA-dependent RNA polymerase family protein 0.66 0.31 -0.31
128 AT5G51350 Leucine-rich repeat transmembrane protein kinase family
protein		 MORE LATERAL GROWTH1 0.66 0.3 -0.31
129 AT2G03090 expansin A15 ATEXP15, expansin A15, ATHEXP
ALPHA 1.3, EXPANSIN 15, expansin
A15		 0.66 0.34 -0.31
130 AT2G21050 like AUXIN RESISTANT 2 like AUXIN RESISTANT 2 0.66 0.31 -0.33
131 AT5G06710 homeobox from Arabidopsis thaliana homeobox from Arabidopsis thaliana 0.66 0.33 -0.32
132 AT3G07540 Actin-binding FH2 (formin homology 2) family protein 0.66 0.32 -0.33
133 AT3G19300 Protein kinase superfamily protein 0.66 0.32 -0.31
134 AT4G26760 microtubule-associated protein 65-2 microtubule-associated protein
65-2		 0.65 0.32 -0.32
135 AT5G63540 Domain of unknown function (DUF1767) ATRMI1, BLAP75, RECQ MEDIATED
INSTABILITY 1		 0.65 0.32 -0.33
136 AT4G14490 SMAD/FHA domain-containing protein 0.64 0.3 -0.3
137 AT3G25710 basic helix-loop-helix 32 ATAIG1, basic helix-loop-helix 32,
TARGET OF MONOPTEROS 5		 0.64 0.28 -0.32
138 AT5G07190 seed gene 3 seed gene 3 0.64 0.3 -0.32
139 AT3G51480 glutamate receptor 3.6 glutamate receptor 3.6, GLR3.6,
glutamate receptor 3.6		 0.64 0.31 -0.32
140 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1		 0.63 0.31 -0.32
141 AT4G10420 FBD / Leucine Rich Repeat domains containing protein 0.63 0.31 -0.33
142 AT5G60690 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein		 INTERFASCICULAR FIBERLESS,
INTERFASCICULAR FIBERLESS 1,
REVOLUTA		 0.63 0.32 -0.32
143 AT1G14480 Ankyrin repeat family protein 0.63 0.3 -0.33
144 AT5G65350 histone 3 11 histone 3 11 0.63 0.31 -0.31
145 AT3G05190 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 0.62 0.31 -0.32
146 AT4G11450 Protein of unknown function (DUF3527) 0.62 0.33 -0.33
147 AT1G76800 Vacuolar iron transporter (VIT) family protein 0.62 0.32 -0.29
148 AT2G26710 Cytochrome P450 superfamily protein PHYB ACTIVATION TAGGED SUPPRESSOR
1, CYP72B1, CYP734A1		 0.62 0.32 -0.31
149 AT4G16610 C2H2-like zinc finger protein 0.62 0.34 -0.32
150 AT5G03450 Transducin/WD40 repeat-like superfamily protein 0.62 0.32 -0.31
151 AT1G79880 RNA recognition motif (RRM)-containing protein 0.62 0.28 -0.32