AT4G28740 : -
Query Information
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AGICode AT4G28740
Description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G28740 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF3493 (InterPro:IPR021883); BEST
Arabidopsis thaliana protein match is: tetratricopeptide
repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 1 0.32 -0.33
2 AT3G17930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3007
(InterPro:IPR021562); Has 236 Blast hits to 236 proteins in
83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80
(source: NCBI BLink).		 0.82 0.3 -0.34
3 AT5G06060 NAD(P)-binding Rossmann-fold superfamily protein 0.79 0.31 -0.3
4 AT1G06690 NAD(P)-linked oxidoreductase superfamily protein 0.78 0.31 -0.3
5 AT5G19850 alpha/beta-Hydrolases superfamily protein 0.78 0.32 -0.32
6 AT1G66330 senescence-associated family protein 0.77 0.29 -0.31
7 AT4G13200 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast,
plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 97 Blast hits to 97 proteins
in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2;
Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2
(source: NCBI BLink).		 0.77 0.32 -0.31
8 AT4G37200 Thioredoxin superfamily protein HIGH CHLOROPHYLL FLUORESCENCE 164 0.76 0.33 -0.33
9 AT4G18810 NAD(P)-binding Rossmann-fold superfamily protein 0.76 0.31 -0.33
10 AT4G04850 K+ efflux antiporter 3 ATKEA3, K+ efflux antiporter 3 0.75 0.33 -0.31
11 AT2G01110 Sec-independent periplasmic protein translocase ALBINO AND PALE GREEN 2, PGA2,
TWIN-ARGININE TRANSLOCATION C,
unfertilized embryo sac 3		 0.75 0.31 -0.31
12 AT5G08410 ferredoxin/thioredoxin reductase subunit A (variable
subunit) 2		 ferredoxin/thioredoxin reductase
subunit A (variable subunit) 2		 0.74 0.32 -0.31
13 AT5G45170 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.74 0.28 -0.3
14 AT5G61830 NAD(P)-binding Rossmann-fold superfamily protein 0.74 0.31 -0.31
15 AT3G06460 GNS1/SUR4 membrane protein family -0.73 0.32 -0.34
16 AT5G58330 lactate/malate dehydrogenase family protein 0.73 0.32 -0.33
17 AT3G29310 calmodulin-binding protein-related -0.73 0.29 -0.32
18 AT1G24400 lysine histidine transporter 2 AMINO ACID TRANSPORTER-LIKE
PROTEIN 2, ARABIDOPSIS LYSINE
HISTIDINE TRANSPORTER 2, lysine
histidine transporter 2		 0.72 0.31 -0.29
19 AT1G76730 NagB/RpiA/CoA transferase-like superfamily protein 0.72 0.31 -0.29
20 AT4G29590 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.72 0.32 -0.33
21 AT5G01510 Protein of unknown function, DUF647 ROOT UV-B SENSITIVE 5 0.72 0.32 -0.3
22 AT5G60300 Concanavalin A-like lectin protein kinase family protein lectin receptor kinase I.9 -0.72 0.32 -0.29
23 AT3G58010 plastoglobulin 34kD plastoglobulin 34kD 0.72 0.31 -0.33
24 AT1G19690 NAD(P)-binding Rossmann-fold superfamily protein 0.72 0.34 -0.33
25 AT4G10030 alpha/beta-Hydrolases superfamily protein 0.72 0.31 -0.35
26 AT4G33580 beta carbonic anhydrase 5 A. THALIANA BETA CARBONIC
ANHYDRASE 5, beta carbonic
anhydrase 5		 0.71 0.29 -0.28
27 AT2G33255 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.71 0.34 -0.32
28 AT1G68830 STT7 homolog STN7 STT7 homolog STN7 0.71 0.3 -0.31
29 AT2G02410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF901 (InterPro:IPR010298); Has 1151
Blast hits to 1151 proteins in 597 species: Archae - 0;
Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.71 0.32 -0.31
30 AT1G74520 HVA22 homologue A HVA22 homologue A, HVA22 homologue
A		 0.71 0.31 -0.33
31 AT4G27390 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.71 0.34 -0.32
32 AT5G05200 Protein kinase superfamily protein 0.71 0.31 -0.31
33 AT4G32320 ascorbate peroxidase 6 ascorbate peroxidase 6 0.71 0.34 -0.32
34 AT5G20220 zinc knuckle (CCHC-type) family protein 0.7 0.34 -0.32
35 AT1G02205 Fatty acid hydroxylase superfamily ECERIFERUM 1 0.7 0.32 -0.33
36 AT1G31190 myo-inositol monophosphatase like 1 myo-inositol monophosphatase like
1		 0.69 0.29 -0.32
37 AT1G65070 DNA mismatch repair protein MutS, type 2 0.69 0.32 -0.31
38 AT5G43680 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.69 0.31 -0.32
39 AT3G18500 DNAse I-like superfamily protein 0.69 0.32 -0.31
40 AT1G65410 non-intrinsic ABC protein 11 ATP-binding cassette I13,
non-intrinsic ABC protein 11,
non-intrinsic ABC protein 11,
TRIGALACTOSYLDIACYLGLYCEROL 3		 0.68 0.31 -0.32
41 AT5G35900 LOB domain-containing protein 35 LOB domain-containing protein 35 0.68 0.32 -0.32
42 AT4G25450 non-intrinsic ABC protein 8 ATP-binding cassette B28,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN 8, non-intrinsic ABC
protein 8		 0.68 0.31 -0.3
43 AT1G68200 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.68 0.33 -0.31
44 AT2G39430 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.68 0.3 -0.3
45 AT3G43420 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.67 0.31 -0.3
46 AT1G73160 UDP-Glycosyltransferase superfamily protein -0.67 0.31 -0.29
47 AT5G04970 Plant invertase/pectin methylesterase inhibitor superfamily -0.67 0.34 -0.3
48 AT5G61670 Encodes a close homolog of the Cauliflower OR (Orange)
protein. The function of OR is to induce the
differentiation of proplastids or other noncolored plastids
into chromoplasts for carotenoid accumulation. Both
proteins contain a Cysteine-rich zinc finger domain that is
highly specific to DnaJ-like molecular chaperons.		 0.67 0.31 -0.32
49 AT1G17050 solanesyl diphosphate synthase 2 solanesyl diphosphate synthase 2 0.67 0.29 -0.3
50 AT2G19110 heavy metal atpase 4 ARABIDOPSIS HEAVY METAL ATPASE 4,
heavy metal atpase 4		 -0.67 0.33 -0.33
51 AT1G28140 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2301, transmembrane
(InterPro:IPR019275); Has 140 Blast hits to 140 proteins in
72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi
- 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3
(source: NCBI BLink).		 0.67 0.31 -0.3
52 AT1G05880 RING/U-box superfamily protein ARIADNE 12, ARABIDOPSIS ARIADNE 12 0.67 0.29 -0.31
53 AT1G17100 SOUL heme-binding family protein 0.67 0.33 -0.29
54 AT3G19070 Homeodomain-like superfamily protein -0.66 0.31 -0.32
55 AT5G12840 nuclear factor Y, subunit A1 ATHAP2A, EMBRYO DEFECTIVE 2220,
HAP2A, nuclear factor Y, subunit
A1		 0.66 0.34 -0.32
56 AT5G23330 Nucleotidylyl transferase superfamily protein 0.66 0.33 -0.33
57 AT5G45690 Protein of unknown function (DUF1264) 0.66 0.31 -0.32
58 AT2G03390 uvrB/uvrC motif-containing protein 0.66 0.3 -0.32
59 AT2G32980 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 0.66 0.33 -0.31
60 AT2G41300 strictosidine synthase-like 1 strictosidine synthase-like 1 -0.66 0.31 -0.3
61 AT1G78510 solanesyl diphosphate synthase 1 solanesyl diphosphate synthase 1 0.66 0.33 -0.31
62 AT4G01940 NFU domain protein 1 AtCNFU1, NFU domain protein 1 0.66 0.31 -0.31
63 AT1G71692 AGAMOUS-like 12 AGAMOUS-like 12, XAANTAL1 -0.66 0.32 -0.32
64 AT2G21940 shikimate kinase 1 ATSK1, shikimate kinase 1 0.66 0.31 -0.31
65 AT3G24440 Fibronectin type III domain-containing protein VIN3-LIKE 1, VERNALIZATION 5 -0.65 0.32 -0.31
66 AT5G66690 UDP-Glycosyltransferase superfamily protein UGT72E2 -0.65 0.34 -0.3
67 AT5G23840 MD-2-related lipid recognition domain-containing protein -0.65 0.33 -0.3
68 AT5G47950 HXXXD-type acyl-transferase family protein -0.65 0.31 -0.29
69 AT3G25655 inflorescence deficient in abscission (IDA)-like 1 inflorescence deficient in
abscission (IDA)-like 1		 -0.64 0.33 -0.32
70 AT2G43480 Peroxidase superfamily protein -0.64 0.29 -0.31
71 AT5G60520 Late embryogenesis abundant (LEA) protein-related -0.64 0.32 -0.31
72 AT3G24210 Ankyrin repeat family protein -0.63 0.33 -0.33
73 AT2G22850 basic leucine-zipper 6 basic leucine-zipper 6, basic
leucine-zipper 6		 -0.63 0.34 -0.32
74 AT1G02810 Plant invertase/pectin methylesterase inhibitor superfamily -0.62 0.34 -0.29
75 AT4G21340 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 B70 -0.62 0.33 -0.32
76 AT2G16835 Aquaporin-like superfamily protein -0.61 0.33 -0.3
77 AT1G50560 cytochrome P450, family 705, subfamily A, polypeptide 25 cytochrome P450, family 705,
subfamily A, polypeptide 25		 -0.61 0.31 -0.32
78 AT2G31900 myosin-like protein XIF MYOSIN 5, MYOSIN XI F, myosin-like
protein XIF		 -0.61 0.3 -0.32
79 AT5G23630 phosphate deficiency response 2 MALE GAMETOGENESIS IMPAIRED
ANTHERS, phosphate deficiency
response 2, PI DEFICIENCY RESPONSE
2		 -0.61 0.3 -0.3
80 AT5G38910 RmlC-like cupins superfamily protein -0.61 0.31 -0.3
81 AT1G08670 ENTH/VHS family protein -0.6 0.31 -0.3
82 AT3G49190 O-acyltransferase (WSD1-like) family protein -0.6 0.3 -0.31
83 AT1G14960 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.6 0.33 -0.3
84 AT3G01220 homeobox protein 20 homeobox protein 20, homeobox
protein 20		 -0.6 0.32 -0.31
85 AT3G01130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN: male
gametophyte, pollen tube; EXPRESSED DURING: M germinated
pollen stage; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.59 0.29 -0.32
86 AT1G48180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.29 -0.33
87 AT3G24810 Cyclin-dependent kinase inhibitor family protein ICK3, kip-related protein 5 -0.58 0.32 -0.3
88 AT4G16790 hydroxyproline-rich glycoprotein family protein -0.58 0.31 -0.32
89 AT5G45070 phloem protein 2-A8 phloem protein 2-A8, phloem
protein 2-A8		 -0.58 0.32 -0.31
90 AT4G03750 transposable element gene -0.58 0.32 -0.3
91 AT5G06200 Uncharacterised protein family (UPF0497) Casparian strip membrane domain
protein 4		 -0.58 0.31 -0.3
92 AT1G66030 cytochrome P450, family 96, subfamily A, polypeptide 14
pseudogene		 cytochrome P450, family 96,
subfamily A, polypeptide 14
pseudogene		 -0.57 0.3 -0.31
93 AT2G27090 Protein of unknown function (DUF630 and DUF632) -0.57 0.32 -0.32
94 AT1G20840 tonoplast monosaccharide transporter1 AtTMT1, tonoplast monosaccharide
transporter1		 -0.57 0.3 -0.31
95 AT4G26470 Calcium-binding EF-hand family protein -0.57 0.31 -0.29