AT4G28210 : embryo defective 1923
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G28210
Description embryo defective 1923
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G28210 embryo defective 1923 embryo defective 1923 1 0.33 -0.31
2 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.93 0.32 -0.33
3 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.91 0.3 -0.33
4 AT2G41950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 53
Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.91 0.33 -0.33
5 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.91 0.3 -0.33
6 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.9 0.31 -0.31
7 AT4G02990 Mitochondrial transcription termination factor family
protein		 BELAYA SMERT, RUGOSA 2 0.9 0.32 -0.31
8 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.89 0.29 -0.34
9 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.89 0.32 -0.31
10 AT1G33040 nascent polypeptide-associated complex subunit alpha-like
protein 5		 nascent polypeptide-associated
complex subunit alpha-like protein
5		 0.89 0.31 -0.33
11 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.89 0.31 -0.31
12 AT4G37510 Ribonuclease III family protein 0.89 0.32 -0.31
13 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.88 0.33 -0.31
14 AT1G50575 Putative lysine decarboxylase family protein 0.88 0.32 -0.31
15 AT1G11430 plastid developmental protein DAG, putative 0.88 0.32 -0.3
16 AT5G24020 septum site-determining protein (MIND) ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 11, ATMIND1, MIND		 0.88 0.31 -0.32
17 AT1G76405 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G20816.1); Has 38 Blast hits to 38 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.88 0.31 -0.3
18 AT1G03475 Coproporphyrinogen III oxidase ATCPO-I, HEMF1, LESION INITIATION
2		 0.88 0.32 -0.31
19 AT3G14110 Tetratricopeptide repeat (TPR)-like superfamily protein FLUORESCENT IN BLUE LIGHT 0.88 0.29 -0.32
20 AT1G06190 Rho termination factor 0.87 0.31 -0.32
21 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.87 0.33 -0.3
22 AT5G63570 glutamate-1-semialdehyde-2,1-aminomutase glutamate-1-semialdehyde-2,1-amino
mutase		 0.87 0.3 -0.3
23 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.87 0.3 -0.33
24 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.3 -0.31
25 AT3G13740 Ribonuclease III family protein 0.87 0.32 -0.3
26 AT3G15850 fatty acid desaturase 5 ADS3, fatty acid desaturase 5,
FATTY ACID DESATURASE B, JB67		 0.86 0.3 -0.31
27 AT5G50250 chloroplast RNA-binding protein 31B chloroplast RNA-binding protein
31B		 0.86 0.32 -0.31
28 AT2G42890 MEI2-like 2 MEI2-like 2, MEI2-like 2 -0.86 0.3 -0.31
29 AT3G04650 FAD/NAD(P)-binding oxidoreductase family protein 0.86 0.33 -0.33
30 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 0.86 0.27 -0.29
31 AT1G33810 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 39 Blast hits to 39 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.86 0.35 -0.33
32 AT3G45050 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 26 Blast hits to 26 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.86 0.33 -0.31
33 AT3G10520 haemoglobin 2 haemoglobin 2, ARATH GLB2,
ARABIDOPSIS HEMOGLOBIN 2,
HEMOGLOBIN 2, haemoglobin 2,
NON-SYMBIOTIC HAEMOGLOBIN 2		 0.85 0.31 -0.32
34 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding		 EMBRYO DEFECTIVE 3147 0.85 0.31 -0.34
35 AT1G04640 lipoyltransferase 2 lipoyltransferase 2 0.85 0.31 -0.32
36 AT1G26570 UDP-glucose dehydrogenase 1 UDP-GLUCOSE DEHYDROGENASE 1,
UDP-glucose dehydrogenase 1		 0.85 0.32 -0.32
37 AT2G23670 homolog of Synechocystis YCF37 homolog of Synechocystis YCF37 0.85 0.32 -0.34
38 AT1G51100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26
Blast hits to 26 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.85 0.34 -0.31
39 AT2G39670 Radical SAM superfamily protein 0.85 0.33 -0.32
40 AT1G10522 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 24 Blast hits to 24 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.84 0.33 -0.33
41 AT5G19750 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.84 0.32 -0.32
42 AT1G11850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 12 growth stages; Has 38777 Blast hits to
8185 proteins in 741 species: Archae - 46; Bacteria -
14846; Metazoa - 13013; Fungi - 1392; Plants - 5894;
Viruses - 543; Other Eukaryotes - 3043 (source: NCBI
BLink).		 0.84 0.31 -0.3
43 AT3G25860 2-oxoacid dehydrogenases acyltransferase family protein LTA2, PLASTID E2 SUBUNIT OF
PYRUVATE DECARBOXYLASE		 0.84 0.32 -0.31
44 AT3G24590 plastidic type i signal peptidase 1 plastidic type i signal peptidase
1		 0.84 0.32 -0.31
45 AT1G69740 Aldolase superfamily protein HEMB1 0.84 0.32 -0.29
46 AT4G20960 Cytidine/deoxycytidylate deaminase family protein 0.84 0.32 -0.32
47 AT1G27460 no pollen germination related 1 no pollen germination related 1 0.83 0.3 -0.32
48 AT3G08740 elongation factor P (EF-P) family protein 0.83 0.33 -0.31
49 AT4G35450 ankyrin repeat-containing protein 2 AFT, ankyrin repeat-containing
protein 2, AKR2A		 0.83 0.32 -0.32
50 AT1G24360 NAD(P)-binding Rossmann-fold superfamily protein 0.83 0.3 -0.35
51 AT4G32915 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
regulation of translational fidelity; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Glu-tRNAGln amidotransferase, C subunit
(InterPro:IPR003837); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.83 0.31 -0.33
52 AT2G43630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast, nucleus, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67
Blast hits to 67 proteins in 20 species: Archae - 0;
Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses
- 2; Other Eukaryotes - 2 (source: NCBI BLink).		 0.83 0.32 -0.3
53 AT1G53290 Galactosyltransferase family protein 0.83 0.3 -0.33
54 AT2G22230 Thioesterase superfamily protein 0.83 0.33 -0.31
55 AT3G59980 Nucleic acid-binding, OB-fold-like protein 0.83 0.32 -0.31
56 AT4G01690 Flavin containing amine oxidoreductase family HEMG1, PPO1, PPOX 0.83 0.3 -0.32
57 AT2G29360 NAD(P)-binding Rossmann-fold superfamily protein 0.83 0.31 -0.31
58 AT1G74730 Protein of unknown function (DUF1118) 0.83 0.32 -0.31
59 AT4G32900 Peptidyl-tRNA hydrolase II (PTH2) family protein 0.83 0.32 -0.31
60 AT1G63440 heavy metal atpase 5 heavy metal atpase 5 -0.82 0.29 -0.31
61 AT2G39350 ABC-2 type transporter family protein ATP-binding cassette G1 -0.82 0.31 -0.33
62 AT5G66170 sulfurtransferase 18 sulfurtransferase 18 -0.81 0.31 -0.32
63 AT3G20250 pumilio 5 pumilio 5, pumilio 5 -0.8 0.31 -0.31
64 AT2G41220 glutamate synthase 2 glutamate synthase 2 -0.8 0.32 -0.32
65 AT1G30270 CBL-interacting protein kinase 23 ATCIPK23, CBL-interacting protein
kinase 23, LOW-K+-SENSITIVE 1,
SOS2-like protein kinase 17,
SNF1-RELATED PROTEIN KINASE 3.23		 -0.78 0.32 -0.31
66 AT5G28510 beta glucosidase 24 beta glucosidase 24 -0.78 0.33 -0.31
67 AT2G38800 Plant calmodulin-binding protein-related -0.78 0.34 -0.33
68 AT5G37540 Eukaryotic aspartyl protease family protein -0.78 0.32 -0.33
69 AT3G11420 Protein of unknown function (DUF604) -0.77 0.29 -0.32
70 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.75 0.31 -0.32
71 AT1G59740 Major facilitator superfamily protein -0.75 0.29 -0.33
72 AT2G16720 myb domain protein 7 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 7, ATY49, myb domain
protein 7		 -0.75 0.32 -0.34
73 AT3G49810 ARM repeat superfamily protein -0.75 0.31 -0.32
74 AT3G16340 pleiotropic drug resistance 1 ATP-binding cassette G29,
PLEIOTROPIC DRUG RESISTANCE 1,
pleiotropic drug resistance 1		 -0.74 0.33 -0.32
75 AT4G23050 PAS domain-containing protein tyrosine kinase family
protein		 -0.74 0.33 -0.31
76 AT4G27260 Auxin-responsive GH3 family protein GH3.5, WES1 -0.74 0.31 -0.3
77 AT5G49880 mitotic checkpoint family protein -0.72 0.32 -0.3
78 AT5G13010 RNA helicase family protein embryo defective 3011 -0.71 0.3 -0.33
79 AT1G05577 Domain of unknown function (DUF966) -0.71 0.3 -0.29
80 AT1G70300 K+ uptake permease 6 K+ uptake permease 6 -0.7 0.29 -0.31
81 AT2G25790 Leucine-rich receptor-like protein kinase family protein -0.7 0.33 -0.32
82 AT3G61990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 O-MTase family 3 protein -0.7 0.32 -0.31
83 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.69 0.32 -0.31
84 AT2G41850 polygalacturonase abscission zone A. thaliana ARABIDOPSIS DEHISCENCE ZONE
POLYGALACTURONASE 2,
polygalacturonase abscission zone
A. thaliana		 -0.69 0.34 -0.31
85 AT3G19200 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G34419.1); Has 51 Blast hits
to 51 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.33 -0.3
86 AT2G25940 alpha-vacuolar processing enzyme alpha-vacuolar processing enzyme,
ALPHAVPE		 -0.69 0.31 -0.32
87 AT4G37295 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stem, root, leaf;
EXPRESSED DURING: LP.06 six leaves visible, LP.04 four
leaves visible; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.69 0.29 -0.32
88 AT1G66950 pleiotropic drug resistance 11 ATP-binding cassette G39,
PLEIOTROPIC DRUG RESISTANCE 11,
pleiotropic drug resistance 11		 -0.68 0.33 -0.36
89 AT3G45300 isovaleryl-CoA-dehydrogenase ATIVD,
isovaleryl-CoA-dehydrogenase,
ISOVALERYL-COA-DEHYDROGENASE		 -0.68 0.32 -0.31