AT4G27010 : EMBRYO DEFECTIVE 2788
Query Information
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AGICode AT4G27010
Description CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G27010 CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis
N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72270.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 EMBRYO DEFECTIVE 2788 1 0.33 -0.3
2 AT3G07770 HEAT SHOCK PROTEIN 89.1 HEAT SHOCK PROTEIN 90-6, HEAT
SHOCK PROTEIN 90.6, HEAT SHOCK
PROTEIN 89.1		 0.84 0.32 -0.31
3 AT2G40360 Transducin/WD40 repeat-like superfamily protein 0.83 0.31 -0.3
4 AT1G60850 DNA-directed RNA polymerase family protein AAC42, ATRPAC42 0.82 0.32 -0.33
5 AT1G29900 carbamoyl phosphate synthetase B carbamoyl phosphate synthetase B,
VENOSA 3		 0.82 0.34 -0.33
6 AT3G06530 ARM repeat superfamily protein 0.82 0.31 -0.32
7 AT1G29940 nuclear RNA polymerase A2 nuclear RNA polymerase A2 0.82 0.31 -0.31
8 AT5G65900 DEA(D/H)-box RNA helicase family protein 0.81 0.31 -0.31
9 AT3G57940 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.81 0.31 -0.33
10 AT5G36950 DegP protease 10 DegP protease 10 0.8 0.28 -0.33
11 AT1G51380 DEA(D/H)-box RNA helicase family protein 0.8 0.31 -0.32
12 AT3G18600 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.8 0.32 -0.3
13 AT4G26600 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.8 0.33 -0.33
14 AT3G07050 GTP-binding family protein nucleostemin-like 1 0.8 0.31 -0.31
15 AT1G13810 Restriction endonuclease, type II-like superfamily protein 0.8 0.3 -0.32
16 AT2G37510 RNA-binding (RRM/RBD/RNP motifs) family protein 0.79 0.33 -0.31
17 AT3G57150 homologue of NAP57 AtCBF5, AtNAP57, CBF5, homologue
of NAP57		 0.79 0.29 -0.32
18 AT1G03830 guanylate-binding family protein 0.79 0.33 -0.32
19 AT1G15870 Mitochondrial glycoprotein family protein 0.79 0.33 -0.33
20 AT2G19640 ASH1-related protein 2 ASH1-related 2, SET DOMAIN PROTEIN
39		 0.78 0.3 -0.29
21 AT2G18330 AAA-type ATPase family protein 0.78 0.31 -0.32
22 AT2G34750 RNA polymerase I specific transcription initiation factor
RRN3 protein		 0.78 0.31 -0.31
23 AT1G06900 Insulinase (Peptidase family M16) family protein 0.78 0.3 -0.3
24 AT3G52140 tetratricopeptide repeat (TPR)-containing protein 0.78 0.34 -0.3
25 AT5G45140 nuclear RNA polymerase C2 nuclear RNA polymerase C2 0.77 0.3 -0.29
26 AT4G21150 ribophorin II (RPN2) family protein HAPLESS 6 0.77 0.3 -0.32
27 AT1G16480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.77 0.33 -0.32
28 AT5G67240 small RNA degrading nuclease 3 small RNA degrading nuclease 3 0.77 0.31 -0.32
29 AT2G36070 translocase inner membrane subunit 44-2 translocase inner membrane subunit
44-2, translocase inner membrane
subunit 44-2		 0.76 0.33 -0.3
30 AT1G59760 RNA helicase, ATP-dependent, SK12/DOB1 protein AtMTR4, homolog of yeast MTR4 0.76 0.32 -0.28
31 AT3G49890 unknown protein; Has 27 Blast hits to 27 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 0.76 0.31 -0.31
32 AT1G56690 Pentatricopeptide repeat (PPR) superfamily protein 0.76 0.31 -0.31
33 AT3G56990 embryo sac development arrest 7 embryo sac development arrest 7 0.75 0.31 -0.33
34 AT1G62040 Ubiquitin-like superfamily protein autophagy 8c -0.75 0.31 -0.32
35 AT3G61100 Putative endonuclease or glycosyl hydrolase 0.75 0.32 -0.36
36 AT1G14300 ARM repeat superfamily protein 0.75 0.3 -0.32
37 AT1G66900 alpha/beta-Hydrolases superfamily protein -0.75 0.32 -0.3
38 AT1G30240 FUNCTIONS IN: binding; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED
IN: 21 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold
(InterPro:IPR016024); Has 165 Blast hits to 164 proteins in
73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi -
68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.75 0.31 -0.33
39 AT1G67120 ATPases;nucleotide binding;ATP
binding;nucleoside-triphosphatases;transcription factor
binding		 0.75 0.3 -0.29
40 AT1G52160 tRNAse Z3 tRNAse Z3 0.75 0.31 -0.32
41 AT1G68990 male gametophyte defective 3 male gametophyte defective 3 0.75 0.31 -0.3
42 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 0.74 0.33 -0.32
43 AT1G76810 eukaryotic translation initiation factor 2 (eIF-2) family
protein		 0.74 0.32 -0.33
44 AT1G04900 Protein of unknown function (DUF185) 0.74 0.31 -0.32
45 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.74 0.32 -0.29
46 AT4G04670 Met-10+ like family protein / kelch repeat-containing
protein		 0.74 0.35 -0.32
47 AT5G52850 Pentatricopeptide repeat (PPR) superfamily protein 0.74 0.32 -0.3
48 AT1G15510 Tetratricopeptide repeat (TPR)-like superfamily protein ARABIDOPSIS EARLY CHLOROPLAST
BIOGENESIS2, EARLY CHLOROPLAST
BIOGENESIS2, VANILLA CREAM 1		 0.73 0.31 -0.31
49 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 0.73 0.32 -0.32
50 AT3G21360 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.73 0.33 -0.29
51 AT2G05120 Nucleoporin, Nup133/Nup155-like 0.73 0.32 -0.33
52 AT4G13750 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 EMBRYO DEFECTIVE 2597, NO VEIN 0.73 0.32 -0.32
53 AT3G02650 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.31 -0.33
54 AT4G01900 GLNB1 homolog GLNB1 homolog, PII -0.73 0.3 -0.3
55 AT1G63810 CONTAINS InterPro DOMAIN/s: Nrap protein
(InterPro:IPR005554); Has 396 Blast hits to 382 proteins in
182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi
- 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60
(source: NCBI BLink).		 0.72 0.32 -0.31
56 AT5G14580 polyribonucleotide nucleotidyltransferase, putative 0.72 0.33 -0.31
57 AT1G44770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits
to 81 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.32 -0.3
58 AT5G42540 exoribonuclease 2 EXORIBONUCLEASE 2, exoribonuclease
2		 0.72 0.3 -0.31
59 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I
family protein		 -0.72 0.32 -0.32
60 AT4G14500 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.72 0.34 -0.32
61 AT5G02790 Glutathione S-transferase family protein Glutathione transferase L3 -0.72 0.29 -0.3
62 AT2G39230 LATERAL ORGAN JUNCTION LATERAL ORGAN JUNCTION 0.72 0.34 -0.32
63 AT1G29880 glycyl-tRNA synthetase / glycine--tRNA ligase 0.72 0.3 -0.36
64 AT3G46210 Ribosomal protein S5 domain 2-like superfamily protein 0.72 0.31 -0.33
65 AT5G27660 Trypsin family protein with PDZ domain 0.71 0.33 -0.31
66 AT3G24080 KRR1 family protein 0.71 0.32 -0.34
67 AT5G39840 ATP-dependent RNA helicase, mitochondrial, putative 0.71 0.3 -0.31
68 AT2G41430 dehydration-induced protein (ERD15) CTC-Interacting Domain 1, EARLY
RESPONSIVE TO DEHYDRATION 15,
LIGHT STRESS-REGULATED 1		 -0.71 0.33 -0.32
69 AT5G13680 IKI3 family protein ABA-OVERLY SENSITIVE 1, AtELP1,
ELONGATA 2		 0.71 0.3 -0.32
70 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO 0.7 0.31 -0.31
71 AT5G17270 Protein prenylyltransferase superfamily protein 0.7 0.3 -0.32
72 AT5G65840 Thioredoxin superfamily protein -0.7 0.32 -0.3
73 AT2G35750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1 Blast hits to 1
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.7 0.3 -0.3
74 AT1G73240 CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup
(InterPro:IPR019049); Has 36 Blast hits to 36 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.7 0.33 -0.31
75 AT5G26180 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.7 0.32 -0.31
76 AT5G40100 Disease resistance protein (TIR-NBS-LRR class) family 0.7 0.33 -0.31
77 AT2G40410 Staphylococcal nuclease homologue -0.69 0.31 -0.31
78 AT3G15840 post-illumination chlorophyll fluorescence increase post-illumination chlorophyll
fluorescence increase		 -0.68 0.32 -0.31
79 AT3G59530 Calcium-dependent phosphotriesterase superfamily protein LESS ADHERENT POLLEN 3 -0.68 0.3 -0.34
80 AT1G11930 Predicted pyridoxal phosphate-dependent enzyme, YBL036C
type		 -0.68 0.31 -0.31
81 AT5G19140 Aluminium induced protein with YGL and LRDR motifs AILP1, ATAILP1 -0.67 0.32 -0.31
82 AT2G30120 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G14750.1); Has 275 Blast hits
to 241 proteins in 42 species: Archae - 4; Bacteria - 15;
Metazoa - 15; Fungi - 4; Plants - 188; Viruses - 0; Other
Eukaryotes - 49 (source: NCBI BLink).		 -0.67 0.32 -0.31
83 AT1G55280 Lipase/lipooxygenase, PLAT/LH2 family protein -0.67 0.33 -0.3
84 AT3G22070 proline-rich family protein -0.67 0.32 -0.32
85 AT5G61500 autophagy 3 (APG3) ATATG3, ATG3 -0.67 0.31 -0.31
86 AT3G04390 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin
binding protein		 -0.67 0.31 -0.28
87 AT1G01550 Protein of unknown function (DUF793) BYPASS 1 -0.67 0.33 -0.32
88 AT4G32320 ascorbate peroxidase 6 ascorbate peroxidase 6 -0.67 0.32 -0.3
89 AT2G32510 mitogen-activated protein kinase kinase kinase 17 mitogen-activated protein kinase
kinase kinase 17		 -0.67 0.31 -0.28
90 AT2G42750 DNAJ heat shock N-terminal domain-containing protein -0.66 0.3 -0.3
91 AT1G50020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages;
Has 72 Blast hits to 72 proteins in 27 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.33 -0.33
92 AT4G30630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G57910.1); Has 33 Blast hits
to 33 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.3 -0.32
93 AT2G22240 myo-inositol-1-phosphate synthase 2 INOSITOL 3-PHOSPHATE SYNTHASE 2,
MYO-INOSITOL-1-PHOSTPATE SYNTHASE
2, myo-inositol-1-phosphate
synthase 2		 -0.66 0.3 -0.32
94 AT1G48420 D-cysteine desulfhydrase 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, A. THALIANA
1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, D-cysteine
desulfhydrase, D-cysteine
desulfhydrase		 -0.66 0.3 -0.33
95 AT1G29390 cold regulated 314 thylakoid membrane 2 cold regulated 314 thylakoid
membrane 2, COLD REGULATED 314
INNER MEMBRANE 2		 -0.66 0.31 -0.31
96 AT1G20850 xylem cysteine peptidase 2 xylem cysteine peptidase 2 -0.66 0.31 -0.33
97 AT2G44230 Plant protein of unknown function (DUF946) -0.65 0.31 -0.29
98 AT3G10210 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 -0.65 0.31 -0.32
99 AT1G78890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.65 0.33 -0.3
100 AT2G31040 ATP synthase protein I -related -0.65 0.3 -0.34
101 AT1G49970 CLP protease proteolytic subunit 1 CLP protease proteolytic subunit
1, NUCLEAR CLPP 5, SUPPRESSOR OF
VARIEGATION 2		 -0.65 0.33 -0.31
102 AT1G22710 sucrose-proton symporter 2 ARABIDOPSIS THALIANA
SUCROSE-PROTON SYMPORTER 2,
sucrose-proton symporter 2,
SUCROSE TRANSPORTER 1		 -0.65 0.34 -0.34
103 AT4G11980 nudix hydrolase homolog 14 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 14, nudix
hydrolase homolog 14, nudix
hydrolase homolog 14		 -0.64 0.32 -0.32
104 AT1G67890 PAS domain-containing protein tyrosine kinase family
protein		 -0.64 0.33 -0.3
105 AT4G33810 Glycosyl hydrolase superfamily protein -0.64 0.3 -0.3
106 AT5G10810 enhancer of rudimentary protein, putative ARABIDOPSIS THALIANA ENHANCER OF
RUDIMENTARY HOMOLOGUE, ENHANCER OF
RUDIMENTARY HOMOLOGUE		 -0.64 0.31 -0.3
107 AT3G51500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.64 0.3 -0.31
108 AT4G27390 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.64 0.29 -0.31
109 AT3G22250 UDP-Glycosyltransferase superfamily protein -0.64 0.3 -0.32
110 AT1G63030 Integrase-type DNA-binding superfamily protein DWARF AND DELAYED FLOWERING 2 -0.64 0.31 -0.31
111 AT3G58350 RESTRICTED TEV MOVEMENT 3 RESTRICTED TEV MOVEMENT 3 -0.63 0.32 -0.31
112 AT5G51320 transposable element gene -0.63 0.32 -0.31
113 AT4G16780 homeobox protein 2 homeobox protein 2, ARABIDOPSIS
THALIANA HOMEOBOX PROTEIN 2, HAT4,
homeobox protein 2		 -0.63 0.32 -0.31
114 AT1G22050 membrane-anchored ubiquitin-fold protein 6 precursor membrane-anchored ubiquitin-fold
protein 6 precursor		 -0.63 0.31 -0.32
115 AT1G41810 transposable element gene -0.63 0.31 -0.31
116 AT4G26160 atypical CYS HIS rich thioredoxin 1 atypical CYS HIS rich thioredoxin
1		 -0.63 0.33 -0.28
117 AT5G19070 SNARE associated Golgi protein family -0.63 0.32 -0.31
118 AT1G12680 phosphoenolpyruvate carboxylase-related kinase 2 phosphoenolpyruvate
carboxylase-related kinase 2		 -0.63 0.32 -0.31
119 AT1G17790 DNA-binding bromodomain-containing protein -0.63 0.29 -0.31
120 AT5G41340 ubiquitin conjugating enzyme 4 UBIQUITIN CONJUGATING ENZYME 4,
ubiquitin conjugating enzyme 4		 -0.63 0.31 -0.34
121 AT5G54855 Pollen Ole e 1 allergen and extensin family protein -0.62 0.33 -0.3
122 AT2G21240 basic pentacysteine 4 BASIC PENTACYSTEINE 4, BBR, basic
pentacysteine 4		 -0.62 0.32 -0.32
123 AT2G15695 Protein of unknown function DUF829, transmembrane 53 -0.62 0.32 -0.31
124 AT5G37970 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.61 0.31 -0.31
125 AT1G14530 Protein of unknown function (DUF1084) TOM THREE HOMOLOG 1 -0.61 0.32 -0.31
126 AT1G77990 STAS domain / Sulfate transporter family AST56, SULPHATE TRANSPORTER 2;2 -0.61 0.33 -0.29
127 AT3G62020 germin-like protein 10 germin-like protein 10 -0.61 0.3 -0.32
128 AT5G40440 mitogen-activated protein kinase kinase 3 mitogen-activated protein kinase
kinase 3, mitogen-activated
protein kinase kinase 3		 -0.61 0.29 -0.31
129 AT1G70210 CYCLIN D1;1 ATCYCD1;1, CYCLIN D1;1 -0.61 0.33 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
130 C0217 Putative glucosinole - - - 0.85 0.44 -0.44
131 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine -0.71 0.45 -0.43 C0030