AT4G27000 : ATRBP45C
Query Information
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AGICode AT4G27000
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G27000 RNA-binding (RRM/RBD/RNP motifs) family protein ATRBP45C 1 0.31 -0.31
2 AT5G19680 Leucine-rich repeat (LRR) family protein 0.75 0.31 -0.32
3 AT5G13780 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.73 0.31 -0.3
4 AT2G30260 U2 small nuclear ribonucleoprotein B U2 small nuclear ribonucleoprotein
B		 0.73 0.3 -0.31
5 AT4G36280 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 -0.73 0.3 -0.3
6 AT4G34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein,
putative / gamma-2 COP, putative		 0.72 0.3 -0.31
7 AT3G05530 regulatory particle triple-A ATPase 5A ATS6A.2, regulatory particle
triple-A ATPase 5A		 0.72 0.34 -0.32
8 AT1G30880 unknown protein; Has 24 Blast hits to 24 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.31 -0.29
9 AT5G16490 ROP-interactive CRIB motif-containing protein 4 ROP-interactive CRIB
motif-containing protein 4		 -0.7 0.32 -0.31
10 AT5G59940 Cysteine/Histidine-rich C1 domain family protein 0.69 0.32 -0.32
11 AT5G11390 WPP domain-interacting protein 1 WPP domain-interacting protein 1 0.69 0.33 -0.33
12 AT3G03380 DegP protease 7 degradation of periplasmic
proteins 7, DegP protease 7		 0.69 0.31 -0.3
13 AT2G19080 metaxin-related 0.69 0.3 -0.3
14 AT3G17090 Protein phosphatase 2C family protein 0.69 0.31 -0.32
15 AT4G34480 O-Glycosyl hydrolases family 17 protein -0.68 0.3 -0.31
16 AT1G64040 type one serine/threonine protein phosphatase 3 type one serine/threonine protein
phosphatase 3		 0.68 0.32 -0.32
17 AT1G11410 S-locus lectin protein kinase family protein -0.68 0.32 -0.31
18 AT3G15040 Protein of unknown function, DUF584 0.68 0.32 -0.32
19 AT3G01140 myb domain protein 106 myb domain protein 106, myb domain
protein 106, NOECK		 -0.67 0.31 -0.29
20 AT1G71780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.67 0.31 -0.32
21 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.67 0.32 -0.33
22 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.67 0.32 -0.33
23 AT3G55850 Amidohydrolase family LONG AFTER FAR-RED 3, LONG AFTER
FAR-RED 3 ISOFORM 1, LAF3 ISOFORM
2		 -0.67 0.32 -0.31
24 AT3G12030 Protein of unknown function DUF106, transmembrane 0.67 0.32 -0.32
25 AT1G50950 Thioredoxin protein with domain of unknown function
(DUF1692)		 -0.67 0.3 -0.31
26 AT3G25730 ethylene response DNA binding factor 3 ethylene response DNA binding
factor 3		 0.66 0.33 -0.3
27 AT4G13100 RING/U-box superfamily protein -0.66 0.31 -0.31
28 AT1G09870 histidine acid phosphatase family protein 0.66 0.32 -0.3
29 AT2G36320 A20/AN1-like zinc finger family protein 0.65 0.3 -0.29
30 AT1G17870 ethylene-dependent gravitropism-deficient and
yellow-green-like 3		 ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3,
ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3		 -0.65 0.32 -0.3
31 AT4G01850 S-adenosylmethionine synthetase 2 AtSAM2, MAT2, S-adenosylmethionine
synthetase 2, S-ADENOSYLMETHIONINE
SYNTHETASE 2		 0.65 0.32 -0.3
32 AT2G23310 Rer1 family protein ATRER1C1 0.65 0.32 -0.3
33 AT2G36930 zinc finger (C2H2 type) family protein 0.65 0.32 -0.31
34 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 0.65 0.31 -0.31
35 AT1G49240 actin 8 actin 8, FRIZZY AND KINKED SHOOTS 0.65 0.31 -0.29
36 AT1G09150 pseudouridine synthase and archaeosine transglycosylase
(PUA) domain-containing protein		 0.65 0.31 -0.3
37 AT3G03380 DegP protease 7 degradation of periplasmic
proteins 7, DegP protease 7		 0.65 0.31 -0.32
38 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 -0.65 0.33 -0.31
39 AT2G46900 CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix,
Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to
2464 proteins in 333 species: Archae - 2; Bacteria - 151;
Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47;
Other Eukaryotes - 1303 (source: NCBI BLink).		 0.64 0.3 -0.3
40 AT4G17060 FRIGIDA interacting protein 2 FRIGIDA interacting protein 2 0.64 0.31 -0.32
41 AT3G53920 RNApolymerase sigma-subunit C SIGMA FACTOR 3, RNApolymerase
sigma-subunit C		 -0.64 0.34 -0.32
42 AT5G43460 HR-like lesion-inducing protein-related 0.64 0.3 -0.32
43 AT1G20900 Predicted AT-hook DNA-binding family protein AT-hook motif nuclear-localized
protein 27, ESCAROLA, ORESARA 7		 0.64 0.32 -0.3
44 AT1G79540 Pentatricopeptide repeat (PPR) superfamily protein 0.64 0.33 -0.3
45 AT5G51130 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.64 0.35 -0.31
46 AT3G01130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN: male
gametophyte, pollen tube; EXPRESSED DURING: M germinated
pollen stage; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.63 0.29 -0.31
47 AT1G05670 Pentatricopeptide repeat (PPR-like) superfamily protein -0.63 0.32 -0.33
48 AT4G27130 Translation initiation factor SUI1 family protein 0.63 0.31 -0.33
49 AT3G46200 nudix hydrolase homolog 9 nudix hydrolase homolog 9, nudix
hydrolase homolog 9		 -0.63 0.31 -0.29
50 AT4G15900 pleiotropic regulatory locus 1 pleiotropic regulatory locus 1 0.63 0.33 -0.33
51 AT2G32600 hydroxyproline-rich glycoprotein family protein 0.63 0.32 -0.32
52 AT1G26270 Phosphatidylinositol 3- and 4-kinase family protein 0.63 0.31 -0.3
53 AT5G42950 GYF domain-containing protein 0.62 0.34 -0.31
54 AT1G61500 S-locus lectin protein kinase family protein -0.62 0.31 -0.32
55 AT5G41940 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.62 0.31 -0.31
56 AT5G35330 methyl-CPG-binding domain protein 02 ATMBD2, methyl-CPG-binding domain
protein 02, METHYL-CPG-BINDING
DOMAIN PROTEIN 2		 0.62 0.33 -0.32
57 AT5G10540 Zincin-like metalloproteases family protein 0.62 0.32 -0.33
58 AT1G15830 unknown protein; Has 165982 Blast hits to 57214 proteins in
2459 species: Archae - 263; Bacteria - 44622; Metazoa -
55751; Fungi - 10656; Plants - 17613; Viruses - 2527; Other
Eukaryotes - 34550 (source: NCBI BLink).		 -0.62 0.32 -0.34
59 AT5G14530 Transducin/WD40 repeat-like superfamily protein 0.62 0.31 -0.3
60 AT2G33620 AT hook motif DNA-binding family protein -0.62 0.31 -0.31
61 AT1G67870 glycine-rich protein -0.61 0.32 -0.3
62 AT2G15020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G64190.1); Has 72 Blast hits
to 72 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.32 -0.31
63 AT2G14835 RING/U-box superfamily protein 0.61 0.3 -0.31
64 AT4G01390 TRAF-like family protein -0.61 0.31 -0.29
65 AT3G29070 emp24/gp25L/p24 family/GOLD family protein 0.61 0.32 -0.35
66 AT4G20490 transposable element gene -0.61 0.33 -0.33
67 AT3G27925 DegP protease 1 DegP protease 1, DegP protease 1 -0.6 0.31 -0.31
68 AT1G13260 related to ABI3/VP1 1 ETHYLENE RESPONSE DNA BINDING
FACTOR 4, related to ABI3/VP1 1		 0.6 0.32 -0.35
69 AT4G09830 Uncharacterised conserved protein UCP009193 0.6 0.32 -0.3
70 AT4G21170 Tetratricopeptide repeat (TPR)-like superfamily protein 0.6 0.34 -0.32
71 AT5G49110 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN:
cultured cell; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.6 0.32 -0.33
72 AT1G75540 salt tolerance homolog2 B BOX 21, B-box domain protein 21,
long hypocotyl under shade, salt
tolerance homolog2		 0.6 0.32 -0.31
73 AT3G47940 DNAJ heat shock family protein 0.6 0.3 -0.31
74 AT1G02060 Tetratricopeptide repeat (TPR)-like superfamily protein 0.6 0.32 -0.31
75 AT1G13980 sec7 domain-containing protein EMBRYO DEFECTIVE 30, GNOM,
VASCULAR NETWORK 7		 0.6 0.31 -0.31
76 AT5G62400 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.3 -0.31
77 AT5G23720 dual specificity protein phosphatase family protein PROPYZAMIDE-HYPERSENSITIVE 1 0.6 0.28 -0.33
78 AT5G41900 alpha/beta-Hydrolases superfamily protein -0.59 0.31 -0.33
79 AT2G39435 Phosphatidylinositol N-acetyglucosaminlytransferase subunit
P-related		 -0.59 0.3 -0.31
80 AT2G23740 nucleic acid binding;sequence-specific DNA binding
transcription factors;zinc ion binding		 -0.59 0.32 -0.31
81 AT5G52540 Protein of unknown function (DUF819) -0.59 0.31 -0.31
82 AT2G05270 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.59 0.34 -0.31
83 AT3G44730 kinesin-like protein 1 AtKIN14h, ARABIDOPSIS KINESIN-LIKE
PROTEIN 1, kinesin-like protein 1		 -0.58 0.32 -0.3
84 AT2G46640 unknown protein; Has 19 Blast hits to 19 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.58 0.32 -0.33
85 AT2G16910 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 ABORTED MICROSPORES -0.57 0.33 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
86 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) -0.83 0.46 -0.47 C0131
87 C0129 Kaempferol-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Kaempferol-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - kaempferol glucoside biosynthesis (Arabidopsis) -0.77 0.44 -0.46
88 C0232 Shikimic acid - Shikimate phenylpropanoid biosynthesis,
chorismate biosynthesis,
simple coumarins biosynthesis 		-0.64 0.31 -0.33 C0232
89 C0168 MST_2023.2 - - - -0.64 0.46 -0.44