AT4G25970 : phosphatidylserine decarboxylase 3
Query Information
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AGICode AT4G25970
Description phosphatidylserine decarboxylase 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G25970 phosphatidylserine decarboxylase 3 phosphatidylserine decarboxylase 3 1 0.3 -0.32
2 AT1G65580 Endonuclease/exonuclease/phosphatase family protein FRAGILE FIBER3 0.79 0.31 -0.33
3 AT3G20290 EPS15 homology domain 1 EPS15 homology domain 1, EPS15
homology domain 1		 0.77 0.32 -0.34
4 AT3G05220 Heavy metal transport/detoxification superfamily protein 0.77 0.3 -0.3
5 AT3G07274 unknown pseudogene 0.76 0.32 -0.31
6 AT1G07510 FTSH protease 10 FTSH protease 10 0.75 0.32 -0.33
7 AT4G11110 SPA1-related 2 SPA1-related 2 0.74 0.3 -0.33
8 AT4G38600 HEAT repeat ;HECT-domain (ubiquitin-transferase) KAKTUS, UBIQUITIN-PROTEIN LIGASE 3 0.74 0.32 -0.32
9 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.73 0.32 -0.33
10 AT1G05380 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.73 0.3 -0.35
11 AT3G11910 ubiquitin-specific protease 13 AtUBP13, ubiquitin-specific
protease 13		 0.73 0.3 -0.29
12 AT2G22010 related to KPC1 related to KPC1 0.73 0.3 -0.3
13 AT3G27870 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 0.73 0.31 -0.32
14 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.72 0.34 -0.33
15 AT4G33210 F-box family protein SLOW MOTION 0.71 0.33 -0.32
16 AT4G19600 Cyclin family protein CYCT1;4 0.71 0.31 -0.31
17 AT4G16800 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.71 0.31 -0.31
18 AT5G34895 transposable element gene -0.7 0.3 -0.34
19 AT1G50700 calcium-dependent protein kinase 33 calcium-dependent protein kinase
33		 0.7 0.31 -0.31
20 AT4G30360 cyclic nucleotide-gated channel 17 CYCLIC NUCLEOTIDE-GATED CHANNEL
17, cyclic nucleotide-gated
channel 17		 0.69 0.32 -0.3
21 AT1G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast
hits to 43153 proteins in 1828 species: Archae - 30;
Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants -
7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI
BLink).		 0.69 0.32 -0.3
22 AT1G21630 Calcium-binding EF hand family protein 0.68 0.3 -0.3
23 AT3G09850 D111/G-patch domain-containing protein 0.68 0.3 -0.31
24 AT3G14080 Small nuclear ribonucleoprotein family protein -0.68 0.32 -0.32
25 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 0.68 0.34 -0.32
26 AT5G16520 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.33 -0.33
27 AT1G58220 Homeodomain-like superfamily protein 0.68 0.31 -0.33
28 AT2G46240 BCL-2-associated athanogene 6 ARABIDOPSIS THALIANA
BCL-2-ASSOCIATED ATHANOGENE 6,
BCL-2-associated athanogene 6		 0.68 0.34 -0.29
29 AT4G29940 pathogenesis related homeodomain protein A pathogenesis related homeodomain
protein A		 0.68 0.33 -0.3
30 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B 0.67 0.34 -0.31
31 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.67 0.31 -0.32
32 AT4G32620 Enhancer of polycomb-like transcription factor protein 0.66 0.32 -0.29
33 AT1G59930 MADS-box family protein -0.66 0.32 -0.32
34 AT5G60260 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.66 0.32 -0.31
35 AT3G23240 ethylene response factor 1 ETHYLENE RESPONSE FACTOR 1,
ethylene response factor 1		 0.66 0.33 -0.3
36 AT3G03320 RNA-binding ASCH domain protein -0.66 0.33 -0.34
37 AT4G29090 Ribonuclease H-like superfamily protein 0.66 0.34 -0.32
38 AT2G22260 oxidoreductase, 2OG-Fe(II) oxygenase family protein -0.66 0.31 -0.33
39 AT1G68810 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.66 0.31 -0.31
40 AT2G19430 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 AtTHO6, DWD (DDB1-binding WD40
protein) hypersensitive to ABA 1,
THO6		 -0.66 0.32 -0.3
41 AT2G05980 transposable element gene 0.66 0.3 -0.3
42 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.66 0.31 -0.31
43 AT5G18475 Pentatricopeptide repeat (PPR) superfamily protein 0.66 0.31 -0.32
44 AT5G06600 ubiquitin-specific protease 12 AtUBP12, ubiquitin-specific
protease 12		 0.66 0.32 -0.29
45 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.65 0.31 -0.31
46 AT5G40340 Tudor/PWWP/MBT superfamily protein 0.65 0.3 -0.3
47 AT1G50470 F-box associated ubiquitination effector family protein 0.65 0.32 -0.31
48 AT5G50380 exocyst subunit exo70 family protein F1 exocyst subunit exo70 family
protein F1, exocyst subunit exo70
family protein F1		 0.65 0.32 -0.33
49 AT4G36630 Vacuolar sorting protein 39 EMBRYO DEFECTIVE 2754 0.65 0.33 -0.3
50 AT2G25730 unknown protein; Has 157 Blast hits to 144 proteins in 62
species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source:
NCBI BLink).		 0.65 0.3 -0.3
51 AT5G60100 pseudo-response regulator 3 pseudo-response regulator 3,
pseudo-response regulator 3		 0.65 0.3 -0.31
52 AT5G23450 long-chain base (LCB) kinase 1 long-chain base (LCB) kinase 1,
long-chain base (LCB) kinase 1		 0.65 0.3 -0.32
53 AT3G29010 Biotin/lipoate A/B protein ligase family -0.65 0.31 -0.31
54 AT5G23550 Got1/Sft2-like vescicle transport protein family -0.65 0.31 -0.32
55 AT2G29560 cytosolic enolase cytosolic enolase -0.65 0.29 -0.29
56 AT1G53590 Calcium-dependent lipid-binding (CaLB domain) family
protein		 NTMC2T6.1, NTMC2TYPE6.1 0.64 0.32 -0.31
57 AT4G24480 Protein kinase superfamily protein 0.64 0.33 -0.31
58 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 0.64 0.32 -0.32
59 AT2G44200 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA
splicing factor		 0.64 0.3 -0.33
60 AT1G05430 unknown protein; Has 31 Blast hits to 31 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.32 -0.35
61 AT1G27630 cyclin T 1;3 cyclin T 1;3 0.64 0.32 -0.3
62 AT5G04210 CCCH-type zinc fingerfamily protein with RNA-binding domain -0.64 0.32 -0.29
63 AT2G42100 Actin-like ATPase superfamily protein -0.64 0.29 -0.33
64 AT5G42920 THO complex, subunit 5 AtTHO5, THO5 0.63 0.31 -0.3
65 AT3G32940 RNA-binding KH domain-containing protein 0.63 0.31 -0.33
66 AT1G76410 RING/U-box superfamily protein ATL8 0.63 0.3 -0.33
67 AT5G24740 Protein of unknown function (DUF1162) 0.63 0.32 -0.31
68 AT4G21323 Subtilase family protein 0.63 0.32 -0.28
69 AT3G48425 DNAse I-like superfamily protein -0.63 0.32 -0.31
70 AT5G22450 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.63 0.31 -0.35
71 AT1G75980 Single hybrid motif superfamily protein -0.63 0.32 -0.31
72 AT3G27700 zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 0.62 0.29 -0.33
73 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 0.62 0.29 -0.32
74 AT5G35130 transposable element gene -0.62 0.32 -0.29
75 AT3G02990 heat shock transcription factor A1E heat shock transcription factor
A1E, heat shock transcription
factor A1E		 0.62 0.3 -0.32
76 AT1G49570 Peroxidase superfamily protein 0.62 0.33 -0.32
77 AT3G30250 transposable element gene -0.62 0.31 -0.3
78 AT4G10280 RmlC-like cupins superfamily protein -0.62 0.31 -0.31
79 AT1G16530 ASYMMETRIC LEAVES 2-like 9 ASYMMETRIC LEAVES 2-like 9, LOB
DOMAIN-CONTAINING PROTEIN 3		 -0.62 0.32 -0.3
80 AT1G07160 Protein phosphatase 2C family protein 0.62 0.32 -0.3
81 AT4G17410 DWNN domain, a CCHC-type zinc finger 0.62 0.32 -0.31
82 AT3G30150 transposable element gene -0.62 0.34 -0.31
83 AT3G59910 Ankyrin repeat family protein 0.61 0.33 -0.31
84 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 0.61 0.31 -0.31
85 AT3G12660 FASCICLIN-like arabinogalactan protein 14 precursor FASCICLIN-like arabinogalactan
protein 14 precursor		 0.61 0.32 -0.31
86 AT5G19900 PRLI-interacting factor, putative 0.61 0.32 -0.31
87 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23		 -0.61 0.34 -0.31
88 AT5G35900 LOB domain-containing protein 35 LOB domain-containing protein 35 -0.61 0.3 -0.32
89 AT2G29190 pumilio 2 pumilio 2, pumilio 2 0.61 0.32 -0.32
90 AT5G47580 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17250.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 ALTERED SEED GERMINATION 7 0.61 0.31 -0.31
91 AT1G15920 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.61 0.33 -0.31
92 AT3G07600 Heavy metal transport/detoxification superfamily protein -0.61 0.31 -0.3
93 AT5G01290 mRNA capping enzyme family protein 0.61 0.33 -0.3
94 AT4G28260 unknown protein; Has 50 Blast hits to 42 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.61 0.34 -0.3
95 AT5G11540 D-arabinono-1,4-lactone oxidase family protein -0.6 0.31 -0.3
96 AT4G35740 DEAD/DEAH box RNA helicase family protein A. THALIANA RECQ HELICASE 3,
RecQl3		 -0.6 0.31 -0.32
97 AT1G72170 Domain of unknown function (DUF543) -0.59 0.31 -0.31
98 AT5G49010 DNA replication protein-related EMBRYO DEFECTIVE 2812, SYNTHETIC
LETHALITY WITH DPB11-1 5		 -0.59 0.32 -0.3
99 AT3G12110 actin-11 actin-11 -0.59 0.32 -0.29
100 AT1G05205 unknown protein; Has 44 Blast hits to 44 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.31 -0.33
101 AT2G01120 origin recognition complex subunit 4 ORIGIN RECOGNITION COMPLEX SUBUNIT
4, origin recognition complex
subunit 4		 -0.59 0.32 -0.31
102 AT5G61340 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.59 0.34 -0.29
103 AT4G22460 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.59 0.29 -0.31
104 AT2G40640 RING/U-box superfamily protein -0.58 0.31 -0.31
105 AT3G07340 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.58 0.31 -0.34
106 AT5G56620 NAC domain containing protein 99 NAC domain containing protein 99,
NAC domain containing protein 99		 -0.57 0.32 -0.31
107 AT5G49510 prefoldin 3 prefoldin 3 -0.57 0.32 -0.34
108 AT4G17980 NAC domain containing protein 71 NAC domain containing protein 71,
NAC domain containing protein 71		 -0.57 0.31 -0.33
109 AT1G11380 PLAC8 family protein -0.57 0.32 -0.31
110 AT5G17070 CONTAINS InterPro DOMAIN/s: Protein phosphatase 4 core
regulatory subunit R2 (InterPro:IPR015267); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.57 0.31 -0.33
111 AT4G09760 Protein kinase superfamily protein -0.57 0.32 -0.29
112 AT4G03670 transposable element gene -0.57 0.32 -0.3
113 AT1G32600 F-box associated ubiquitination effector family protein -0.57 0.33 -0.3
114 AT5G35250 transposable element gene -0.56 0.32 -0.32
115 AT2G24950 Protein of Unknown Function (DUF239) -0.56 0.31 -0.31
116 AT5G43890 Flavin-binding monooxygenase family protein SUPPRESSOR OF ER 1, YUCCA5 -0.56 0.31 -0.31
117 AT1G72580 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.31 -0.33
118 AT3G20030 F-box and associated interaction domains-containing protein -0.56 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
119 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate -0.75 0.43 -0.42 C0136
120 C0193 Pantothenic acid D,L-Pantothenic acid Pantothenate pantothenate biosynthesis 0.7 0.47 -0.45 C0193
121 C0184 MST_3110.4 - - - 0.67 0.47 -0.47