AT4G24560 : ubiquitin-specific protease 16
Query Information
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AGICode AT4G24560
Description ubiquitin-specific protease 16
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G24560 ubiquitin-specific protease 16 ubiquitin-specific protease 16 1 0.31 -0.3
2 AT1G52820 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.71 0.3 -0.29
3 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.7 0.31 -0.32
4 AT3G05510 Phospholipid/glycerol acyltransferase family protein 0.7 0.32 -0.33
5 AT1G02080 transcription regulators 0.7 0.31 -0.3
6 AT4G00450 RNA polymerase II transcription mediators CENTER CITY, CRYPTIC PRECOCIOUS 0.7 0.33 -0.31
7 AT5G02030 POX (plant homeobox) family protein BEL1-LIKE HOMEODOMAIN 9,
BELLRINGER, HB-6, LARSON,
PENNYWISE, REPLUMLESS, VAAMANA		 0.69 0.32 -0.3
8 AT4G24140 alpha/beta-Hydrolases superfamily protein -0.68 0.3 -0.31
9 AT3G54670 Structural maintenance of chromosomes (SMC) family protein ATSMC1, STRUCTURAL MAINTENANCE OF
CHROMOSOMES 1, TITAN8		 0.68 0.33 -0.3
10 AT1G07960 PDI-like 5-1 PDI-like 5-1, PDI-like 5-1 -0.68 0.34 -0.31
11 AT5G23890 LOCATED IN: mitochondrion, chloroplast thylakoid membrane,
chloroplast, plastid, chloroplast envelope; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G52410.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.67 0.32 -0.32
12 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.67 0.34 -0.31
13 AT3G01560 Protein of unknown function (DUF1421) 0.67 0.3 -0.33
14 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 0.66 0.31 -0.31
15 AT1G65920 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 0.66 0.33 -0.3
16 AT5G16630 DNA repair protein Rad4 family ATRAD4, RAD4 0.66 0.3 -0.29
17 AT3G19710 branched-chain aminotransferase4 branched-chain aminotransferase4 -0.66 0.31 -0.31
18 AT3G02885 GAST1 protein homolog 5 GAST1 protein homolog 5 -0.66 0.34 -0.35
19 AT5G51210 oleosin3 oleosin3 0.66 0.33 -0.31
20 AT5G62330 BEST Arabidopsis thaliana protein match is: Plant
invertase/pectin methylesterase inhibitor superfamily
protein (TAIR:AT5G62340.1); Has 9 Blast hits to 9 proteins
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.34 -0.33
21 AT5G04290 kow domain-containing transcription factor 1 kow domain-containing
transcription factor 1, SPT5-LIKE		 0.65 0.31 -0.32
22 AT2G47410 WD40/YVTN repeat-like-containing domain;Bromodomain 0.65 0.32 -0.3
23 AT5G42970 Proteasome component (PCI) domain protein ATS4, CONSTITUTIVE
PHOTOMORPHOGENIC 14, CONSTITUTIVE
PHOTOMORPHOGENIC 8, COP9
SIGNALOSOME SUBUNIT 4, EMBRYO
DEFECTIVE 134, FUSCA 4, FUSCA 8		 -0.65 0.32 -0.31
24 AT1G54330 NAC domain containing protein 20 NAC domain containing protein 20,
NAC domain containing protein 20		 -0.64 0.31 -0.31
25 AT5G02670 BEST Arabidopsis thaliana protein match is: poly(A)
polymerase 3 (TAIR:AT3G06560.1); Has 14 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.64 0.3 -0.32
26 AT5G11870 Alkaline phytoceramidase (aPHC) -0.64 0.33 -0.31
27 AT5G18230 transcription regulator NOT2/NOT3/NOT5 family protein 0.64 0.31 -0.33
28 AT4G18610 Protein of unknown function (DUF640) LIGHT SENSITIVE HYPOCOTYLS 9 -0.64 0.31 -0.31
29 AT3G20110 cytochrome P450, family 705, subfamily A, polypeptide 20 cytochrome P450, family 705,
subfamily A, polypeptide 20		 -0.64 0.3 -0.31
30 AT5G47480 RGPR-related 0.64 0.31 -0.33
31 AT3G20910 nuclear factor Y, subunit A9 nuclear factor Y, subunit A9 0.64 0.33 -0.31
32 AT3G22380 time for coffee TIME FOR COFFEE 0.64 0.33 -0.32
33 AT5G26930 GATA transcription factor 23 GATA transcription factor 23 -0.63 0.35 -0.3
34 AT1G74090 desulfo-glucosinolate sulfotransferase 18 DESULFO-GLUCOSINOLATE
SULFOTRANSFERASE 18, ARABIDOPSIS
SULFOTRANSFERASE 5B,
desulfo-glucosinolate
sulfotransferase 18		 -0.63 0.33 -0.3
35 AT5G57130 Clp amino terminal domain-containing protein 0.63 0.33 -0.29
36 AT1G55510 branched-chain alpha-keto acid decarboxylase E1 beta
subunit		 branched-chain alpha-keto acid
decarboxylase E1 beta subunit		 0.63 0.33 -0.34
37 AT1G55350 calpain-type cysteine protease family ATDEK1, DEFECTIVE KERNEL 1, embryo
defective 1275, EMBRYO DEFECTIVE
80		 0.63 0.3 -0.32
38 AT1G07530 SCARECROW-like 14 ARABIDOPSIS THALIANA GRAS (GAI,
RGA, SCR) 2, GRAS (GAI, RGA, SCR)
2, SCARECROW-like 14		 0.62 0.31 -0.31
39 AT4G36670 Major facilitator superfamily protein AtPLT6, AtPMT6, polyol transporter
6, polyol/monosaccharide
transporter 6		 -0.62 0.33 -0.33
40 AT3G52640 Zn-dependent exopeptidases superfamily protein 0.62 0.31 -0.33
41 AT4G25250 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.62 0.31 -0.33
42 AT5G14540 Protein of unknown function (DUF1421) 0.62 0.31 -0.31
43 AT5G61920 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G67170.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.62 0.33 -0.32
44 AT5G67360 Subtilase family protein ARA12 0.62 0.31 -0.3
45 AT1G74030 enolase 1 enolase 1 -0.62 0.3 -0.31
46 AT5G43810 Stabilizer of iron transporter SufD / Polynucleotidyl
transferase		 ARGONAUTE 10, PINHEAD, ZWILLE 0.62 0.31 -0.32
47 AT3G43040 transposable element gene 0.62 0.3 -0.31
48 AT2G40930 ubiquitin-specific protease 5 ATUBP5, PIGMENT DEFECTIVE EMBRYO
323, ubiquitin-specific protease 5		 0.62 0.33 -0.34
49 AT1G03060 Beige/BEACH domain ;WD domain, G-beta repeat protein SPIRRIG 0.62 0.32 -0.34
50 AT3G01310 Phosphoglycerate mutase-like family protein 0.62 0.31 -0.34
51 AT2G33600 NAD(P)-binding Rossmann-fold superfamily protein -0.61 0.31 -0.29
52 AT3G14980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.61 0.3 -0.32
53 AT4G00630 K+ efflux antiporter 2 ATKEA2, K+ efflux antiporter 2 0.61 0.3 -0.32
54 AT3G12890 activator of spomin::LUC2 activator of spomin::LUC2 -0.61 0.31 -0.32
55 AT3G16830 TOPLESS-related 2 TOPLESS-related 2 0.61 0.33 -0.34
56 AT4G27270 Quinone reductase family protein -0.61 0.32 -0.31
57 AT1G24420 HXXXD-type acyl-transferase family protein -0.61 0.32 -0.29
58 AT4G01630 expansin A17 EXPANSIN 17, expansin A17, ATHEXP
ALPHA 1.13, expansin A17		 -0.61 0.31 -0.33
59 AT1G13910 Leucine-rich repeat (LRR) family protein 0.61 0.33 -0.29
60 AT4G29620 Cytidine/deoxycytidylate deaminase family protein 0.61 0.33 -0.33
61 AT1G28410 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: myosin heavy chain-related (TAIR:AT4G31340.2);
Has 425 Blast hits to 402 proteins in 77 species: Archae -
4; Bacteria - 22; Metazoa - 249; Fungi - 4; Plants - 98;
Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).		 -0.61 0.32 -0.31
62 AT2G11220 transposable element gene 0.61 0.31 -0.3
63 AT5G01400 HEAT repeat-containing protein ENHANCED SILENCING PHENOTYPE 4 0.6 0.32 -0.32
64 AT1G65380 Leucine-rich repeat (LRR) family protein Receptor Like Protein 10, clavata
2		 0.6 0.32 -0.3
65 AT1G47340 F-box and associated interaction domains-containing protein 0.6 0.3 -0.31
66 AT4G35240 Protein of unknown function (DUF630 and DUF632) 0.6 0.33 -0.32
67 AT4G25580 CAP160 protein 0.6 0.32 -0.32
68 AT1G55970 histone acetyltransferase of the CBP family 4 HAC04, histone acetyltransferase
of the CBP family 4, HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 6, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 04, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 4		 0.6 0.32 -0.32
69 AT5G54850 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.6 0.32 -0.31
70 AT5G22760 PHD finger family protein 0.6 0.31 -0.31
71 ATCG00160 ribosomal protein S2 ribosomal protein S2 0.6 0.33 -0.32
72 AT1G55030 RNI-like superfamily protein -0.6 0.3 -0.34
73 AT1G78815 Protein of unknown function (DUF640) LIGHT SENSITIVE HYPOCOTYLS 7 -0.6 0.32 -0.32
74 AT2G40160 Plant protein of unknown function (DUF828) TBL30 -0.6 0.33 -0.31
75 AT1G34320 Protein of unknown function (DUF668) 0.6 0.31 -0.31
76 AT4G22790 MATE efflux family protein -0.6 0.34 -0.29
77 AT3G43740 Leucine-rich repeat (LRR) family protein -0.6 0.32 -0.31
78 AT5G07290 MEI2-like 4 MEI2-like 4, MEI2-like 4 0.6 0.33 -0.31
79 AT1G51320 F-box and associated interaction domains-containing protein 0.6 0.31 -0.33
80 AT4G20480 Putative endonuclease or glycosyl hydrolase 0.6 0.29 -0.31
81 AT4G07530 transposable element gene 0.59 0.3 -0.32
82 AT4G34100 RING/U-box superfamily protein 0.59 0.31 -0.31
83 AT1G30740 FAD-binding Berberine family protein -0.59 0.3 -0.31
84 AT1G33680 KH domain-containing protein 0.59 0.32 -0.31
85 AT1G07830 ribosomal protein L29 family protein -0.59 0.32 -0.3
86 AT1G14960 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.59 0.31 -0.31
87 AT2G31590 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G04730.1); Has 30 Blast hits
to 30 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.59 0.31 -0.33
88 AT5G08170 porphyromonas-type peptidyl-arginine deiminase family
protein		 AGMATINE IMINOHYDROLASE, EMBRYO
DEFECTIVE 1873		 -0.59 0.31 -0.29
89 ATCG01120 chloroplast ribosomal protein S15 chloroplast ribosomal protein S15 0.59 0.31 -0.32
90 AT4G21323 Subtilase family protein 0.59 0.31 -0.32
91 AT5G46190 RNA-binding KH domain-containing protein 0.59 0.31 -0.29
92 AT3G42310 unknown protein; Has 66 Blast hits to 66 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0;
Plants - 18; Viruses - 31; Other Eukaryotes - 5 (source:
NCBI BLink).		 0.59 0.31 -0.32
93 AT5G18920 Cox19-like CHCH family protein -0.59 0.32 -0.32
94 AT5G16280 Tetratricopeptide repeat (TPR)-like superfamily protein 0.59 0.32 -0.3
95 AT1G29680 Protein of unknown function (DUF1264) 0.59 0.32 -0.29
96 AT4G26320 arabinogalactan protein 13 arabinogalactan protein 13 -0.59 0.32 -0.33
97 AT1G18750 AGAMOUS-like 65 AGAMOUS-like 65 0.58 0.31 -0.3
98 AT4G00150 GRAS family transcription factor ARABIDOPSIS THALIANA HAIRY
MERISTEM 3, HAIRY MERISTEM 3, LOST
MERISTEMS 3		 0.58 0.32 -0.33
99 AT2G42810 protein phosphatase 5.2 Arabidopsis thaliana protein
phosphatase 5, PAPP5, PROTEIN
PHOSPHATASE 5, protein phosphatase
5.2		 -0.58 0.31 -0.31
100 AT5G22500 fatty acid reductase 1 fatty acid reductase 1 0.58 0.31 -0.34
101 AT2G43670 Carbohydrate-binding X8 domain superfamily protein -0.58 0.32 -0.27
102 AT3G50690 Leucine-rich repeat (LRR) family protein 0.58 0.32 -0.29
103 AT3G44700 Plant protein of unknown function -0.58 0.3 -0.33
104 AT2G45040 Matrixin family protein -0.58 0.33 -0.32
105 AT5G13830 FtsJ-like methyltransferase family protein -0.58 0.29 -0.32
106 AT2G19070 spermidine hydroxycinnamoyl transferase spermidine hydroxycinnamoyl
transferase		 -0.58 0.33 -0.32
107 AT5G27970 ARM repeat superfamily protein 0.58 0.31 -0.33
108 AT1G79200 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.58 0.33 -0.32
109 AT2G33790 arabinogalactan protein 30 arabinogalactan protein 30,
ATAGP30		 -0.58 0.32 -0.34
110 AT1G68875 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: petal, leaf whorl,
sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; Has 4 Blast hits to 4
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.57 0.32 -0.32
111 AT1G78460 SOUL heme-binding family protein -0.57 0.31 -0.3
112 AT3G59370 Vacuolar calcium-binding protein-related -0.57 0.32 -0.32
113 AT1G22460 O-fucosyltransferase family protein -0.57 0.31 -0.33
114 AT3G12300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF667
(InterPro:IPR007714); Has 373 Blast hits to 371 proteins in
116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi
- 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85
(source: NCBI BLink).		 -0.57 0.3 -0.32
115 AT5G57730 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.57 0.31 -0.32
116 AT3G58180 ARM repeat superfamily protein -0.57 0.31 -0.31
117 AT3G63250 homocysteine methyltransferase 2 HOMOCYSTEINE METHYLTRANSFERASE-2,
HOMOCYSTEINE METHYLTRANSFERASE-2,
homocysteine methyltransferase 2		 -0.57 0.32 -0.32
118 AT2G47020 Peptide chain release factor 1 -0.56 0.31 -0.35
119 AT4G23730 Galactose mutarotase-like superfamily protein -0.56 0.32 -0.31
120 AT5G01500 thylakoid ATP/ADP carrier thylakoid ATP/ADP carrier -0.56 0.32 -0.34
121 AT2G22160 Cysteine proteinases superfamily protein -0.56 0.31 -0.32
122 AT1G18140 laccase 1 ATLAC1, laccase 1 -0.56 0.31 -0.3
123 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 -0.56 0.32 -0.31
124 AT1G76860 Small nuclear ribonucleoprotein family protein -0.56 0.29 -0.33
125 AT1G65680 expansin B2 expansin B2, ATHEXP BETA 1.4,
expansin B2		 -0.56 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
126 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - 0.73 0.44 -0.44
127 C0086 Disinapylspermidine - - - 0.68 0.45 -0.42
128 C0001 α-Linolenic acid - (9,12,15)-Linolenate traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
poly-hydroxy fatty acids biosynthesis,
jasmonic acid biosynthesis 		0.66 0.43 -0.45 C0001