AT4G24440 : -
Query Information
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AGICode AT4G24440
Description transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G24440 transcription initiation factor IIA gamma chain /
TFIIA-gamma (TFIIA-S)		 1 0.32 -0.3
2 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 0.84 0.33 -0.3
3 AT3G18165 modifier of snc1,4 Modifier of snc1,4 0.81 0.34 -0.33
4 AT3G22320 Eukaryotic rpb5 RNA polymerase subunit family protein ATRPABC24.3, NRPB5, NRPD5, RNA
POLYMERASE II FIFTH LARGEST
SUBUNIT, A		 0.81 0.3 -0.31
5 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 0.8 0.3 -0.3
6 AT3G25940 TFIIB zinc-binding protein 0.79 0.32 -0.31
7 AT2G34570 PIN domain-like family protein maternal effect embryo arrest 21 0.79 0.31 -0.3
8 AT1G27050 homeobox protein 54 0.79 0.31 -0.32
9 AT1G64350 Transducin/WD40 repeat-like superfamily protein SEH1H 0.79 0.31 -0.29
10 AT4G39920 C-CAP/cofactor C-like domain-containing protein PORCINO, TUBULIN-FOLDING COFACTOR
C		 0.79 0.31 -0.31
11 AT1G15470 Transducin/WD40 repeat-like superfamily protein 0.79 0.32 -0.33
12 AT1G79390 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.78 0.31 -0.33
13 AT4G31985 Ribosomal protein L39 family protein 0.78 0.31 -0.31
14 AT1G77570 Winged helix-turn-helix transcription repressor DNA-binding 0.78 0.31 -0.3
15 AT4G18040 eukaryotic translation initiation factor 4E ARABIDOPSIS THALIANA EUKARYOTIC
TRANSLATION INITATION FACTOR 4E1,
CUCUMOVIRUS MULTIPLICATION 1,
eukaryotic translation initiation
factor 4E, eukaryotic translation
Initiation Factor 4E1		 0.77 0.32 -0.32
16 AT2G32220 Ribosomal L27e protein family 0.77 0.32 -0.31
17 AT4G24940 SUMO-activating enzyme 1A AT-SAE1-1, SUMO-ACTIVATING ENZYME
1A, SUMO-activating enzyme 1A		 0.77 0.33 -0.3
18 AT4G13940 S-adenosyl-L-homocysteine hydrolase S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE
1, EMBRYO DEFECTIVE 1395,
HOMOLOGY-DEPENDENT GENE SILENCING
1, MATERNAL EFFECT EMBRYO ARREST
58, S-ADENOSYL-L-HOMOCYSTEIN
HYDROLASE 1		 0.77 0.31 -0.32
19 AT2G45860 unknown protein; Has 32 Blast hits to 32 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.77 0.3 -0.31
20 AT1G04260 CAMV movement protein interacting protein 7 CAMV movement protein interacting
protein 7, CAMV MOVEMENT PROTEIN
INTERACTING PROTEIN 7, PRENYLATED
RAB ACCEPTOR 1.D		 0.77 0.31 -0.32
21 AT1G72340 NagB/RpiA/CoA transferase-like superfamily protein 0.77 0.3 -0.31
22 AT1G10590 Nucleic acid-binding, OB-fold-like protein 0.76 0.31 -0.32
23 AT2G17360 Ribosomal protein S4 (RPS4A) family protein 0.76 0.31 -0.32
24 AT5G18420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF2363
(InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.75 0.31 -0.33
25 AT3G02220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2039 (InterPro:IPR019351); Has 215
Blast hits to 215 proteins in 94 species: Archae - 2;
Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.74 0.32 -0.32
26 AT5G28840 GDP-D-mannose 3',5'-epimerase GDP-D-mannose 3',5'-epimerase 0.74 0.32 -0.32
27 AT3G21140 Pyridoxamine 5'-phosphate oxidase family protein 0.74 0.31 -0.33
28 AT3G14230 related to AP2 2 related to AP2 2 0.74 0.3 -0.33
29 AT2G16500 arginine decarboxylase 1 arginine decarboxylase 1, ARGDC,
ARGDC1, SPE1		 0.73 0.3 -0.32
30 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.32 -0.32
31 AT5G67060 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 HECATE 1 0.73 0.31 -0.32
32 AT2G47420 Ribosomal RNA adenine dimethylase family protein adenosine dimethyl transferase 1A 0.73 0.31 -0.3
33 AT1G07570 Protein kinase superfamily protein APK1, APK1A 0.72 0.31 -0.32
34 AT3G06790 plastid developmental protein DAG, putative 0.72 0.33 -0.33
35 AT2G22360 DNAJ heat shock family protein 0.72 0.32 -0.29
36 AT2G04740 ankyrin repeat family protein 0.72 0.3 -0.31
37 AT2G44310 Calcium-binding EF-hand family protein 0.72 0.31 -0.32
38 AT3G05420 acyl-CoA binding protein 4 acyl-CoA binding protein 4 0.72 0.31 -0.31
39 AT5G12190 RNA-binding (RRM/RBD/RNP motifs) family protein 0.71 0.33 -0.32
40 AT3G05850 transposable element gene 0.71 0.31 -0.33
41 AT5G43860 chlorophyllase 2 ARABIDOPSIS THALIANA
CHLOROPHYLLASE 2, chlorophyllase 2		 0.71 0.32 -0.33
42 AT3G59810 Small nuclear ribonucleoprotein family protein 0.71 0.33 -0.3
43 AT2G02880 mucin-related 0.71 0.33 -0.29
44 AT5G07370 inositol polyphosphate kinase 2 alpha INOSITOL POLYPHOSPHATE KINASE 2
ALPHA, inositol polyphosphate
kinase 2 alpha		 0.71 0.32 -0.3
45 AT5G19680 Leucine-rich repeat (LRR) family protein 0.7 0.31 -0.3
46 AT2G20690 lumazine-binding family protein 0.7 0.32 -0.33
47 AT5G23870 Pectinacetylesterase family protein 0.69 0.32 -0.34
48 AT2G34520 mitochondrial ribosomal protein S14 mitochondrial ribosomal protein
S14		 0.69 0.33 -0.3
49 AT3G53340 nuclear factor Y, subunit B10 nuclear factor Y, subunit B10 0.69 0.31 -0.32
50 AT5G12170 CRT (chloroquine-resistance transporter)-like transporter 3 CRT (chloroquine-resistance
transporter)-like transporter 3		 0.69 0.32 -0.31
51 AT5G62740 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 ATHIR1, AtHIR4,
HYPERSENSITIVE-INDUCED RESPONSE
PROTEIN 1, hypersensitive induced
reaction 4		 0.69 0.3 -0.33
52 AT3G63090 Ubiquitin carboxyl-terminal hydrolase family protein 0.69 0.33 -0.29
53 AT1G55150 DEA(D/H)-box RNA helicase family protein 0.69 0.33 -0.32
54 AT4G38890 FMN-linked oxidoreductases superfamily protein 0.69 0.31 -0.3
55 AT2G40240 Tetratricopeptide repeat (TPR)-like superfamily protein 0.68 0.32 -0.33
56 AT3G26850 histone-lysine N-methyltransferases 0.68 0.28 -0.3
57 AT2G25190 PPPDE putative thiol peptidase family protein 0.68 0.31 -0.31
58 AT2G40780 Nucleic acid-binding, OB-fold-like protein 0.68 0.32 -0.32
59 AT5G58660 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.68 0.33 -0.33
60 AT3G57340 Heat shock protein DnaJ, N-terminal with domain of unknown
function (DUF1977)		 0.68 0.31 -0.33
61 AT5G53540 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.68 0.34 -0.31
62 AT5G54690 galacturonosyltransferase 12 galacturonosyltransferase 12,
IRREGULAR XYLEM 8, LGT6		 -0.67 0.3 -0.31
63 AT3G52060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.67 0.31 -0.31
64 AT1G07485 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: shoot apex,
embryo, leaf whorl, pedicel; EXPRESSED DURING: 4 anthesis,
D bilateral stage; Has 5 Blast hits to 5 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.67 0.33 -0.31
65 AT2G15440 Protein of unknown function (DUF579) -0.67 0.28 -0.3
66 AT5G01770 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1A, RAPTOR1A, RAPTOR2 -0.66 0.31 -0.32
67 AT3G50220 Protein of unknown function (DUF579) IRREGULAR XYLEM 15 -0.65 0.29 -0.32
68 AT5G44030 cellulose synthase A4 cellulose synthase A4, IRREGULAR
XYLEM 5, NWS2		 -0.64 0.32 -0.31
69 AT1G72140 Major facilitator superfamily protein -0.64 0.33 -0.31
70 AT1G67870 glycine-rich protein -0.62 0.32 -0.31
71 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.62 0.31 -0.31
72 AT1G68710 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.62 0.31 -0.3
73 AT4G08160 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 -0.59 0.31 -0.32
74 AT5G17420 Cellulose synthase family protein ATCESA7, CELLULOSE SYNTHASE
CATALYTIC SUBUNIT 7, IRREGULAR
XYLEM 3, MURUS 10		 -0.59 0.31 -0.31
75 AT4G20140 Leucine-rich repeat transmembrane protein kinase GASSHO1 -0.58 0.32 -0.32
76 AT2G02820 myb domain protein 88 myb domain protein 88, myb domain
protein 88		 -0.58 0.3 -0.3
77 AT1G68790 little nuclei3 CROWDED NUCLEI 3, LITTLE NUCLEI3 -0.57 0.32 -0.33
78 AT5G01360 Plant protein of unknown function (DUF828) TRICHOME BIREFRINGENCE-LIKE 3 -0.57 0.33 -0.32
79 AT4G33740 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G37820.1); Has 138210 Blast
hits to 73191 proteins in 2959 species: Archae - 732;
Bacteria - 18006; Metazoa - 48521; Fungi - 16820; Plants -
7078; Viruses - 1046; Other Eukaryotes - 46007 (source:
NCBI BLink).		 -0.57 0.34 -0.33
80 AT1G64590 NAD(P)-binding Rossmann-fold superfamily protein -0.57 0.31 -0.3
81 AT3G20480 tetraacyldisaccharide 4'-kinase family protein AtLpxK, lipid X K -0.56 0.33 -0.32
82 AT3G45680 Major facilitator superfamily protein -0.56 0.31 -0.31
83 AT5G24150 FAD/NAD(P)-binding oxidoreductase family protein SQUALENE MONOOXYGENASE 5, SQP1 -0.56 0.29 -0.3
84 AT1G24030 Protein kinase superfamily protein -0.56 0.32 -0.32
85 AT5G38870 transposable element gene -0.55 0.33 -0.31
86 AT4G24250 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 13,
MILDEW RESISTANCE LOCUS O 13		 -0.55 0.3 -0.32
87 AT5G47635 Pollen Ole e 1 allergen and extensin family protein -0.54 0.31 -0.31
88 AT4G28130 diacylglycerol kinase 6 ATDGK6, diacylglycerol kinase 6 -0.53 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
89 C0235 Sinapoyl malate Sinapoyl-(S)-malate Sinapoyl-(S)-malate sinapate ester biosynthesis -0.57 0.31 -0.32 C0235