AT4G23980 : auxin response factor 9
Query Information
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AGICode AT4G23980
Description auxin response factor 9
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G23980 auxin response factor 9 auxin response factor 9 1 0.3 -0.33
2 AT1G20490 AMP-dependent synthetase and ligase family protein 0.8 0.3 -0.32
3 AT3G10730 SAD1/UNC-84 domain protein 2 ARABIDOPSIS SAD1/UNC-84 DOMAIN
PROTEIN 2, SAD1/UNC-84 domain
protein 2		 -0.79 0.31 -0.31
4 AT2G38800 Plant calmodulin-binding protein-related 0.79 0.32 -0.31
5 AT1G13380 Protein of unknown function (DUF1218) -0.78 0.28 -0.31
6 AT1G20010 tubulin beta-5 chain tubulin beta-5 chain -0.77 0.31 -0.3
7 AT5G02880 ubiquitin-protein ligase 4 ubiquitin-protein ligase 4 0.76 0.31 -0.34
8 AT1G13870 calmodulin binding;purine nucleotide binding AtKTI12, DEFORMED ROOTS AND LEAVES
1		 -0.76 0.33 -0.32
9 AT4G14320 Zinc-binding ribosomal protein family protein -0.75 0.3 -0.32
10 AT1G22270 Trm112p-like protein -0.75 0.3 -0.34
11 AT5G09510 Ribosomal protein S19 family protein -0.74 0.3 -0.3
12 AT1G17680 tetratricopeptide repeat (TPR)-containing protein 0.74 0.32 -0.31
13 AT5G07090 Ribosomal protein S4 (RPS4A) family protein -0.74 0.31 -0.3
14 AT3G07170 Sterile alpha motif (SAM) domain-containing protein -0.74 0.32 -0.33
15 AT4G36250 aldehyde dehydrogenase 3F1 aldehyde dehydrogenase 3F1 -0.74 0.31 -0.33
16 AT3G49010 breast basic conserved 1 breast basic conserved 1, breast
basic conserved 1, 40S RIBOSOMAL
PROTEIN		 -0.73 0.32 -0.29
17 AT5G41970 Metal-dependent protein hydrolase -0.73 0.32 -0.31
18 AT4G37020 BEST Arabidopsis thaliana protein match is: eukaryotic
initiation factor 4A-III (TAIR:AT3G19760.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.73 0.33 -0.32
19 AT3G43720 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.73 0.33 -0.31
20 AT1G15750 Transducin family protein / WD-40 repeat family protein TOPLESS, WUS-INTERACTING PROTEIN 1 0.73 0.31 -0.29
21 AT3G01340 Transducin/WD40 repeat-like superfamily protein -0.72 0.3 -0.32
22 AT5G58230 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS MULTICOPY SUPRESSOR OF
IRA1, MATERNAL EFFECT EMBRYO
ARREST 70, MULTICOPY SUPRESSOR OF
IRA1		 -0.72 0.3 -0.31
23 AT4G01990 Tetratricopeptide repeat (TPR)-like superfamily protein -0.72 0.3 -0.32
24 AT3G01100 hypothetical protein 1 ARABIDOPSIS THALIANA HYPOTHETICAL
PROTEIN 1, hypothetical protein 1		 0.72 0.32 -0.31
25 AT4G32850 nuclear poly(a) polymerase nuclear poly(a) polymerase,
poly(A) polymerase IV		 0.72 0.33 -0.32
26 AT5G47630 mitochondrial acyl carrier protein 3 mitochondrial acyl carrier protein
3		 -0.72 0.3 -0.33
27 AT3G12370 Ribosomal protein L10 family protein -0.72 0.33 -0.32
28 AT2G19750 Ribosomal protein S30 family protein -0.71 0.31 -0.29
29 AT1G55805 BolA-like family protein -0.71 0.33 -0.3
30 AT2G43460 Ribosomal L38e protein family -0.71 0.34 -0.3
31 AT1G26730 EXS (ERD1/XPR1/SYG1) family protein 0.71 0.31 -0.34
32 AT1G35620 PDI-like 5-2 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 8, PDI-like
5-2, PROTEIN DISULFIDE ISOMERASE
8, PDI-like 5-2		 -0.71 0.3 -0.33
33 AT4G24510 HXXXD-type acyl-transferase family protein ECERIFERUM 2, VC-2, VC2 -0.71 0.3 -0.31
34 AT4G39920 C-CAP/cofactor C-like domain-containing protein PORCINO, TUBULIN-FOLDING COFACTOR
C		 -0.71 0.31 -0.31
35 AT5G10940 transducin family protein / WD-40 repeat family protein ALTERED SEED GERMINATION 2 0.71 0.31 -0.31
36 AT3G18740 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein receptor-like kinase 902 -0.71 0.31 -0.32
37 AT5G19750 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein -0.7 0.32 -0.31
38 AT2G27720 60S acidic ribosomal protein family -0.7 0.3 -0.32
39 AT2G43710 Plant stearoyl-acyl-carrier-protein desaturase family
protein		 FATTY ACID BIOSYNTHESIS 2,
suppressor of SA insensitive 2		 -0.7 0.32 -0.33
40 AT1G51510 RNA-binding (RRM/RBD/RNP motifs) family protein Y14 -0.7 0.3 -0.33
41 AT4G33865 Ribosomal protein S14p/S29e family protein -0.7 0.33 -0.31
42 AT2G23670 homolog of Synechocystis YCF37 homolog of Synechocystis YCF37 -0.7 0.31 -0.32
43 AT2G41840 Ribosomal protein S5 family protein -0.7 0.32 -0.29
44 AT1G65660 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 1 0.7 0.31 -0.31
45 AT2G14520 CBS domain-containing protein with a domain of unknown
function (DUF21)		 0.7 0.3 -0.34
46 AT2G45710 Zinc-binding ribosomal protein family protein -0.69 0.33 -0.32
47 AT3G55360 3-oxo-5-alpha-steroid 4-dehydrogenase family protein ATTSC13, ECERIFERUM 10, ENOYL-COA
REDUCTASE, TSC13		 -0.69 0.32 -0.31
48 AT3G05560 Ribosomal L22e protein family -0.69 0.32 -0.32
49 AT5G59500 protein C-terminal S-isoprenylcysteine carboxyl
O-methyltransferases		 -0.69 0.32 -0.33
50 AT2G17230 EXORDIUM like 5 EXORDIUM like 5 -0.69 0.3 -0.32
51 AT5G63570 glutamate-1-semialdehyde-2,1-aminomutase glutamate-1-semialdehyde-2,1-amino
mutase		 -0.69 0.33 -0.31
52 AT2G06925 Phospholipase A2 family protein PHOSPHOLIPASE A2-ALPHA, PLA2-ALPHA -0.69 0.32 -0.31
53 AT3G55890 Yippee family putative zinc-binding protein 0.69 0.33 -0.31
54 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 0.69 0.3 -0.32
55 AT1G33810 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 39 Blast hits to 39 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.69 0.29 -0.3
56 AT2G19540 Transducin family protein / WD-40 repeat family protein -0.69 0.33 -0.31
57 AT1G23490 ADP-ribosylation factor 1 ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR,
ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR 1A		 -0.69 0.3 -0.32
58 AT3G49910 Translation protein SH3-like family protein -0.68 0.33 -0.3
59 AT1G75180 Erythronate-4-phosphate dehydrogenase family protein -0.68 0.29 -0.3
60 AT1G50575 Putative lysine decarboxylase family protein -0.68 0.31 -0.32
61 AT2G27530 Ribosomal protein L1p/L10e family PIGGYBACK1 -0.68 0.32 -0.29
62 AT3G07230 wound-responsive protein-related -0.68 0.3 -0.32
63 AT3G06470 GNS1/SUR4 membrane protein family -0.68 0.3 -0.3
64 AT3G53890 Ribosomal protein S21e -0.68 0.31 -0.33
65 AT3G13674 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast
hits to 76 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.31 -0.29
66 AT3G57130 Ankyrin repeat family protein / BTB/POZ domain-containing
protein		 BLADE ON PETIOLE 1 -0.68 0.33 -0.29
67 AT2G46930 Pectinacetylesterase family protein -0.68 0.32 -0.32
68 AT2G30980 SHAGGY-related protein kinase dZeta SHAGGY-related protein kinase
dZeta, A. THALIANA SHAGGY-LIKE
KINASE GROUP 2 2, SHAGGY-LIKE
PROTEIN KINASE 23, BIN2-LIKE 1,
SHAGGY-related protein kinase
dZeta		 -0.68 0.31 -0.31
69 AT1G34760 general regulatory factor 11 GF14 OMICRON, general regulatory
factor 11, ROOT HAIR SPECIFIC 5		 -0.68 0.32 -0.29
70 AT3G56800 calmodulin 3 CALMODULIN 3, calmodulin 3 -0.68 0.32 -0.32
71 AT1G05350 NAD(P)-binding Rossmann-fold superfamily protein -0.68 0.3 -0.3
72 AT4G29390 Ribosomal protein S30 family protein -0.68 0.31 -0.31
73 AT1G26440 ureide permease 5 ureide permease 5, UPS5, ureide
permease 5		 0.68 0.32 -0.32
74 AT2G47840 Uncharacterised conserved protein ycf60 translocon at the inner envelope
membrane of chloroplasts 20-II,
translocon at the inner envelope
membrane of chloroplasts 20-II		 -0.68 0.29 -0.34
75 AT5G60890 myb domain protein 34 ATMYB34, ALTERED TRYPTOPHAN
REGULATION 1, myb domain protein
34		 0.68 0.32 -0.31
76 AT2G32390 glutamate receptor 3.5 glutamate receptor 3.5, glutamate
receptor 3.5, GLR6		 -0.68 0.31 -0.32
77 AT1G78040 Pollen Ole e 1 allergen and extensin family protein -0.68 0.33 -0.32
78 AT5G24570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.68 0.33 -0.3
79 AT3G16340 pleiotropic drug resistance 1 ATP-binding cassette G29,
PLEIOTROPIC DRUG RESISTANCE 1,
pleiotropic drug resistance 1		 0.67 0.29 -0.3
80 AT1G06190 Rho termination factor -0.67 0.29 -0.32
81 AT4G17180 O-Glycosyl hydrolases family 17 protein -0.67 0.32 -0.32
82 AT4G35450 ankyrin repeat-containing protein 2 AFT, ankyrin repeat-containing
protein 2, AKR2A		 -0.67 0.35 -0.32
83 AT5G24020 septum site-determining protein (MIND) ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 11, ATMIND1, MIND		 -0.67 0.33 -0.32
84 AT1G03750 switch 2 CHROMATIN REMODELING 9 0.67 0.3 -0.3
85 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 0.67 0.32 -0.32
86 AT5G23440 ferredoxin/thioredoxin reductase subunit A (variable
subunit) 1		 ferredoxin/thioredoxin reductase
subunit A (variable subunit) 1		 -0.67 0.31 -0.28
87 AT2G43630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast, nucleus, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67
Blast hits to 67 proteins in 20 species: Archae - 0;
Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses
- 2; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.67 0.32 -0.31
88 AT1G10550 xyloglucan:xyloglucosyl transferase 33 XYLOGLUCAN:XYLOGLUCOSYL
TRANSFERASE 33,
xyloglucan:xyloglucosyl
transferase 33		 -0.67 0.32 -0.31
89 AT5G04790 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.67 0.31 -0.31
90 AT3G19190 autophagy 2 ATATG2, AUTOPHAGY 2 0.67 0.3 -0.33
91 AT2G18290 anaphase promoting complex 10 anaphase promoting complex 10,
EMBRYO DEFECTIVE 2783		 -0.67 0.3 -0.33
92 AT1G14687 homeobox protein 32 homeobox protein 32, homeobox
protein 32, ZINC FINGER
HOMEODOMAIN 14		 -0.67 0.3 -0.34
93 AT3G11240 arginine-tRNA protein transferase 2 ATATE2, arginine-tRNA protein
transferase 2		 0.67 0.34 -0.31
94 AT2G03350 Protein of unknown function, DUF538 -0.67 0.32 -0.32
95 AT1G18160 Protein kinase superfamily protein 0.67 0.32 -0.33
96 AT1G70790 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.67 0.32 -0.31
97 AT4G21326 subtilase 3.12 subtilase 3.12, subtilase 3.12 0.66 0.32 -0.31
98 AT1G49560 Homeodomain-like superfamily protein -0.66 0.3 -0.32
99 AT5G61040 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.66 0.31 -0.33
100 AT1G70300 K+ uptake permease 6 K+ uptake permease 6 0.66 0.31 -0.29
101 AT3G44780 Cysteine proteinases superfamily protein -0.66 0.32 -0.34
102 AT1G14320 Ribosomal protein L16p/L10e family protein ribosomal protein L10, ribosomal
protein L10 A, SUPPRESSOR OF
ACAULIS 52		 -0.66 0.3 -0.34
103 AT5G42580 cytochrome P450, family 705, subfamily A, polypeptide 12 cytochrome P450, family 705,
subfamily A, polypeptide 12		 0.66 0.3 -0.32
104 AT1G24330 ARM repeat superfamily protein 0.66 0.34 -0.32
105 AT3G48610 non-specific phospholipase C6 non-specific phospholipase C6 -0.66 0.31 -0.3
106 AT3G17210 heat stable protein 1 A. THALIANA HEAT STABLE PROTEIN 1,
heat stable protein 1		 -0.66 0.33 -0.31
107 AT3G49810 ARM repeat superfamily protein 0.66 0.33 -0.32
108 AT5G63560 HXXXD-type acyl-transferase family protein 0.66 0.33 -0.31
109 AT1G21540 AMP-dependent synthetase and ligase family protein -0.66 0.31 -0.3
110 AT5G49880 mitotic checkpoint family protein 0.66 0.33 -0.3
111 AT4G13600 Carbohydrate-binding X8 domain superfamily protein -0.66 0.31 -0.32
112 AT1G09910 Rhamnogalacturonate lyase family protein 0.66 0.32 -0.34
113 AT5G17840 DnaJ/Hsp40 cysteine-rich domain superfamily protein -0.66 0.32 -0.32
114 AT2G17975 zinc finger (Ran-binding) family protein 0.65 0.3 -0.32
115 AT5G42600 marneral synthase marneral synthase 0.65 0.32 -0.31
116 AT5G46340 O-acetyltransferase family protein REDUCED WALL ACETYLATION 1 0.65 0.32 -0.32
117 AT2G25790 Leucine-rich receptor-like protein kinase family protein 0.64 0.33 -0.32
118 AT2G18370 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.64 0.3 -0.3
119 AT2G16005 MD-2-related lipid recognition domain-containing protein 0.64 0.31 -0.31
120 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 0.64 0.33 -0.31
121 AT3G05210 nucleotide repair protein, putative ERCC1, UV REPAIR DEFICIENT 7 0.63 0.3 -0.31
122 AT3G27670 ARM repeat superfamily protein RESURRECTION1 0.63 0.33 -0.33
123 AT5G19660 SITE-1 protease SITE-1 PROTEASE, ATSBT6.1, SITE-1
protease		 0.63 0.32 -0.34
124 AT2G02970 GDA1/CD39 nucleoside phosphatase family protein 0.63 0.31 -0.31
125 AT5G19330 ARM repeat protein interacting with ABF2 ARM repeat protein interacting
with ABF2		 0.63 0.31 -0.32
126 AT4G02020 SET domain-containing protein EZA1, SET DOMAIN-CONTAINING
PROTEIN 10, SWINGER		 0.62 0.32 -0.31
127 AT5G24670 Cytidine/deoxycytidylate deaminase family protein EMBRYO DEFECTIVE 2820, tRNA
adenosine deaminase 3		 0.62 0.31 -0.34
128 AT1G48430 Dihydroxyacetone kinase 0.61 0.32 -0.3
129 AT3G28890 receptor like protein 43 receptor like protein 43, receptor
like protein 43		 0.61 0.33 -0.34
130 AT1G22860 Vacuolar sorting protein 39 0.6 0.34 -0.32
131 AT3G53090 ubiquitin-protein ligase 7 ubiquitin-protein ligase 7 0.6 0.34 -0.31
132 AT5G42590 cytochrome P450, family 71, subfamily A, polypeptide 16 cytochrome P450, family 71,
subfamily A, polypeptide 16,
marneral oxidase		 0.6 0.32 -0.32
133 AT5G57840 HXXXD-type acyl-transferase family protein 0.6 0.28 -0.31
134 AT2G46560 transducin family protein / WD-40 repeat family protein 0.6 0.32 -0.31
135 AT2G25740 ATP-dependent protease La (LON) domain protein 0.6 0.33 -0.29
136 AT5G58510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G55060.2); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.59 0.31 -0.28
137 AT1G60490 vacuolar protein sorting 34 ATVPS34, PHOSPATIDYLINOSITOL
3-KINASE, vacuolar protein sorting
34		 0.59 0.34 -0.3
138 AT1G21430 Flavin-binding monooxygenase family protein YUC11 0.59 0.33 -0.32
139 AT5G05160 Leucine-rich repeat protein kinase family protein REDUCED IN LATERAL GROWTH1 0.59 0.3 -0.31
140 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 0.59 0.32 -0.32
141 AT1G05577 Domain of unknown function (DUF966) 0.59 0.32 -0.29
142 AT2G37650 GRAS family transcription factor 0.59 0.34 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
143 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		0.71 0.47 -0.42 C0109
144 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		0.68 0.43 -0.46 C0107