AT4G22250 : -
Query Information
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AGICode AT4G22250
Description RING/U-box superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G22250 RING/U-box superfamily protein 1 0.32 -0.32
2 AT4G31320 SAUR-like auxin-responsive protein family 0.73 0.33 -0.31
3 AT2G46000 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Mesoderm development candidate 2 (InterPro:IPR019330); Has
31 Blast hits to 31 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.32 -0.3
4 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.29 -0.32
5 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 -0.68 0.31 -0.31
6 AT3G25840 Protein kinase superfamily protein -0.67 0.32 -0.32
7 AT5G02260 expansin A9 ATEXP9, expansin A9, ATHEXP ALPHA
1.10, EXP9, expansin A9		 0.66 0.31 -0.31
8 AT1G29990 prefoldin 6 prefoldin 6 0.65 0.3 -0.3
9 AT1G12740 cytochrome P450, family 87, subfamily A, polypeptide 2 cytochrome P450, family 87,
subfamily A, polypeptide 2		 0.65 0.33 -0.31
10 AT3G29390 RS2-interacting KH protein RS2-interacting KH protein -0.65 0.34 -0.31
11 AT5G57530 xyloglucan endotransglucosylase/hydrolase 12 AtXTH12, xyloglucan
endotransglucosylase/hydrolase 12		 0.65 0.31 -0.32
12 AT5G41850 alpha/beta-Hydrolases superfamily protein -0.64 0.31 -0.3
13 AT5G43900 myosin 2 ARABIDOPSIS MYOSIN 2, myosin 2,
MYOSIN X1 2, MYOSIN XI-6		 -0.64 0.31 -0.3
14 AT1G56680 Chitinase family protein 0.64 0.33 -0.3
15 AT4G02270 root hair specific 13 root hair specific 13 0.64 0.3 -0.35
16 AT2G37120 S1FA-like DNA-binding protein 0.63 0.34 -0.33
17 AT1G05720 selenoprotein family protein 0.63 0.34 -0.34
18 AT1G18510 tetraspanin 16 tetraspanin 16 -0.63 0.32 -0.32
19 AT4G13260 Flavin-binding monooxygenase family protein YUCCA2 -0.63 0.31 -0.32
20 AT3G17090 Protein phosphatase 2C family protein 0.63 0.32 -0.33
21 AT5G19790 related to AP2 11 related to AP2 11 0.62 0.31 -0.32
22 AT3G54040 PAR1 protein 0.62 0.32 -0.33
23 AT3G23030 indole-3-acetic acid inducible 2 indole-3-acetic acid inducible 2 0.62 0.32 -0.34
24 AT1G48090 calcium-dependent lipid-binding family protein -0.62 0.33 -0.31
25 ATCG00780 ribosomal protein L14 ribosomal protein L14 -0.62 0.31 -0.31
26 AT3G11500 Small nuclear ribonucleoprotein family protein 0.61 0.31 -0.34
27 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 -0.61 0.33 -0.32
28 ATCG00540 photosynthetic electron transfer A photosynthetic electron transfer A -0.61 0.32 -0.31
29 AT4G38410 Dehydrin family protein 0.61 0.33 -0.3
30 AT4G25820 xyloglucan endotransglucosylase/hydrolase 14 ATXTH14, xyloglucan
endotransglucosylase/hydrolase 14,
xyloglucan endotransglycosylase 9		 0.61 0.3 -0.3
31 AT5G56320 expansin A14 ATEXP14, expansin A14, ATHEXP
ALPHA 1.5, EXPANSIN 14, expansin
A14		 0.61 0.31 -0.28
32 AT5G35240 transposable element gene -0.6 0.29 -0.32
33 AT1G34340 alpha/beta-Hydrolases superfamily protein -0.6 0.3 -0.29
34 AT1G14040 EXS (ERD1/XPR1/SYG1) family protein 0.6 0.32 -0.31
35 AT1G09420 glucose-6-phosphate dehydrogenase 4 glucose-6-phosphate dehydrogenase
4		 -0.6 0.31 -0.3
36 ATCG00530 CemA-like proton extrusion protein-related YCF10 -0.6 0.31 -0.32
37 AT5G35190 proline-rich extensin-like family protein extensin 13 0.6 0.3 -0.32
38 ATCG00770 ribosomal protein S8 ribosomal protein S8 -0.6 0.3 -0.33
39 AT2G36810 ARM repeat superfamily protein -0.6 0.33 -0.3
40 AT5G07050 nodulin MtN21 /EamA-like transporter family protein -0.6 0.3 -0.3
41 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 -0.6 0.3 -0.31
42 AT3G14570 glucan synthase-like 4 glucan synthase-like 4, atgsl4,
gsl04, glucan synthase-like 4		 -0.6 0.31 -0.3
43 AT5G09410 ethylene induced calmodulin binding protein calmodulin-binding transcription
activator 1, ethylene induced
calmodulin binding protein		 -0.6 0.29 -0.3
44 AT1G73700 MATE efflux family protein -0.59 0.31 -0.3
45 ATCG00750 ribosomal protein S11 ribosomal protein S11 -0.59 0.29 -0.32
46 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 -0.59 0.31 -0.32
47 AT2G42330 GC-rich sequence DNA-binding factor-like protein with
Tuftelin interacting domain		 -0.59 0.32 -0.31
48 AT3G17920 Outer arm dynein light chain 1 protein -0.59 0.31 -0.3
49 AT3G10220 tubulin folding cofactor B EMBRYO DEFECTIVE 2804 0.59 0.31 -0.29
50 AT5G15230 GAST1 protein homolog 4 GAST1 protein homolog 4 0.59 0.34 -0.32
51 AT3G45810 ferric reductase-like transmembrane component family
protein		 -0.59 0.33 -0.32
52 AT3G27540 beta-1,4-N-acetylglucosaminyltransferase family protein -0.59 0.33 -0.32
53 AT2G27900 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein
sorting-associated protein 54 (InterPro:IPR019515); Has 316
Blast hits to 252 proteins in 92 species: Archae - 0;
Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 -0.59 0.31 -0.29
54 AT2G43040 tetratricopeptide repeat (TPR)-containing protein no pollen germination 1 0.58 0.32 -0.32
55 AT3G18030 HAL3-like protein A ATHAL3, ARABIDOPSIS THALIANA
HAL3-LIKE PROTEIN A, HALOTOLERANCE
DETERMINANT 3, HAL3-like protein A		 0.58 0.3 -0.32
56 AT3G20930 RNA-binding (RRM/RBD/RNP motifs) family protein -0.58 0.32 -0.3
57 AT4G33870 Peroxidase superfamily protein -0.58 0.33 -0.32
58 AT3G63270 CONTAINS InterPro DOMAIN/s: Putative harbinger
transposase-derived nuclease (InterPro:IPR006912); BEST
Arabidopsis thaliana protein match is: PIF / Ping-Pong
family of plant transposases (TAIR:AT3G55350.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.58 0.31 -0.3
59 AT3G26350 LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel,
carpel, stamen; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Late embryogenesis abundant protein, group 2
(InterPro:IPR004864); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13050.1); Has 3534
Blast hits to 2704 proteins in 342 species: Archae - 6;
Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162;
Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink).		 -0.58 0.32 -0.31
60 AT1G33070 MADS-box family protein -0.58 0.3 -0.32
61 AT3G04220 Disease resistance protein (TIR-NBS-LRR class) family -0.58 0.3 -0.31
62 AT4G24630 DHHC-type zinc finger family protein -0.57 0.3 -0.31
63 AT5G37180 sucrose synthase 5 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 5, sucrose synthase 5		 -0.57 0.29 -0.31
64 AT3G63180 TIC-like TICKLE, TIC-like -0.57 0.31 -0.31
65 AT3G54500 BEST Arabidopsis thaliana protein match is: dentin
sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183
Blast hits to 175 proteins in 44 species: Archae - 0;
Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120;
Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).		 -0.57 0.31 -0.33
66 AT5G38700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, LP.10 ten leaves
visible, petal differentiation and expansion stage, LP.08
eight leaves visible, LP.12 twelve leaves visible; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.57 0.32 -0.31
67 AT5G24670 Cytidine/deoxycytidylate deaminase family protein EMBRYO DEFECTIVE 2820, tRNA
adenosine deaminase 3		 -0.57 0.31 -0.31
68 AT1G30810 Transcription factor jumonji (jmj) family protein / zinc
finger (C5HC2 type) family protein		 -0.57 0.3 -0.31
69 AT5G65320 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.57 0.31 -0.33
70 AT3G22360 alternative oxidase 1B alternative oxidase 1B 0.57 0.3 -0.31
71 AT4G11950 Protein of unknown function (DUF1191) -0.57 0.33 -0.31
72 AT4G00231 ARM repeat superfamily protein maternal effect embryo arrest 50 0.56 0.33 -0.32
73 ATCG00740 RNA polymerase subunit alpha RNA polymerase subunit alpha -0.56 0.31 -0.29
74 AT4G33720 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.56 0.29 -0.31
75 AT5G05080 ubiquitin-conjugating enzyme 22 ATUBC22, ubiquitin-conjugating
enzyme 22		 0.56 0.33 -0.33
76 AT2G39520 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.32 -0.32
77 AT4G38760 Protein of unknown function (DUF3414) -0.56 0.35 -0.32
78 AT1G23830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 12 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G23840.1); Has 57 Blast hits to 52 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.56 0.33 -0.31
79 ATCG00340 Photosystem I, PsaA/PsaB protein PSAB -0.56 0.32 -0.31
80 AT5G60600 4-hydroxy-3-methylbut-2-enyl diphosphate synthase CHLOROPLAST BIOGENESIS 4,
CONSTITUTIVE SUBTILISIN 3, GCPE,
4-hydroxy-3-methylbut-2-enyl
diphosphate synthase, ISPG		 -0.56 0.32 -0.32
81 AT4G01210 glycosyl transferase family 1 protein -0.56 0.32 -0.31
82 AT4G13080 xyloglucan endotransglucosylase/hydrolase 1 xyloglucan
endotransglucosylase/hydrolase 1		 -0.55 0.31 -0.32
83 AT4G00760 pseudo-response regulator 8 pseudo-response regulator 8,
PSEUDO-RESPONSE REGULATOR 8		 -0.55 0.31 -0.31
84 AT5G47440 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 0.55 0.31 -0.33
85 AT1G36940 unknown protein; Has 21 Blast hits to 21 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.55 0.33 -0.32
86 AT5G45570 Ulp1 protease family protein -0.55 0.33 -0.32
87 AT2G15410 transposable element gene -0.55 0.32 -0.31
88 AT5G18070 phosphoglucosamine mutase-related DNA-DAMAGE-REPAIR/TOLERATION 101 0.55 0.33 -0.31
89 ATCG00120 ATP synthase subunit alpha ATP synthase subunit alpha -0.55 0.3 -0.31
90 AT3G20040 Hexokinase ATHXK4, HEXOKINASE-LIKE 2 -0.55 0.34 -0.32
91 AT3G20710 F-box family protein 0.55 0.33 -0.32
92 AT3G06670 binding -0.54 0.31 -0.32
93 AT5G36870 glucan synthase-like 9 glucan synthase-like 9, atgsl9,
gsl09, glucan synthase-like 9		 -0.54 0.33 -0.32
94 AT2G35550 basic pentacysteine 7 BASIC PENTACYSTEINE 7, BBR, basic
pentacysteine 7		 -0.54 0.32 -0.29
95 AT5G27150 Na+/H+ exchanger 1 AT-NHX1, ATNHX, ATNHX1, Na+/H+
exchanger 1		 -0.54 0.3 -0.32
96 AT1G28590 GDSL-like Lipase/Acylhydrolase superfamily protein -0.54 0.32 -0.31
97 AT1G63970 isoprenoid F isoprenoid F,
2C-METHYL-D-ERYTHRITOL
2,4-CYCLODIPHOSPHATE SYNTHASE		 -0.54 0.29 -0.31
98 AT3G50430 unknown protein; Has 54 Blast hits to 54 proteins in 22
species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.54 0.31 -0.3
99 AT5G58870 FTSH protease 9 FTSH protease 9 -0.53 0.32 -0.3
100 AT3G30810 transposable element gene -0.53 0.32 -0.32
101 AT5G58550 ETO1-like 2 ETO1-like 2 -0.53 0.31 -0.32
102 AT1G08190 vacuolar protein sorting 41 ATVAM2, VACUOLAR PROTEIN SORTING
41, VAM2, vacuolar protein sorting
41, ZIGZAG SUPPRESSOR 2		 -0.53 0.34 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
103 C0211 PR_MST_2158.8 - - - -0.68 0.43 -0.46
104 C0035 4-Methoxyindol-3-ylmethylglucosinolate - 4-Methoxy-3-indolylmethyl glucosinolate glucosinolate biosynthesis from tryptophan,
indole glucosinolate breakdown (active in intact plant cell) 		0.68 0.46 -0.43 C0035