AT4G21550 : VP1/ABI3-like 3
Query Information
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AGICode AT4G21550
Description VP1/ABI3-like 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G21550 VP1/ABI3-like 3 VP1/ABI3-like 3 1 0.31 -0.31
2 AT4G26460 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.72 0.32 -0.31
3 AT3G22950 ADP-ribosylation factor C1 ADP-ribosylation factor C1,
ADP-ribosylation factor C1		 -0.69 0.34 -0.33
4 AT4G17640 casein kinase II beta chain 2 casein kinase II beta chain 2 -0.69 0.32 -0.32
5 AT2G21870 copper ion binding;cobalt ion binding;zinc ion binding MALE GAMETOPHYTE DEFECTIVE 1 -0.68 0.32 -0.3
6 AT1G09330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
integral to membrane; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF846, eukaryotic
(InterPro:IPR008564); Has 518 Blast hits to 518 proteins in
206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi
- 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107
(source: NCBI BLink).		 -0.68 0.31 -0.31
7 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 -0.67 0.34 -0.3
8 AT2G22425 Microsomal signal peptidase 12 kDa subunit (SPC12) -0.67 0.32 -0.32
9 AT3G29360 UDP-glucose 6-dehydrogenase family protein UDP-glucose dehydrogenase 2 -0.67 0.32 -0.29
10 AT1G52730 Transducin/WD40 repeat-like superfamily protein -0.67 0.33 -0.31
11 AT3G54170 FKBP12 interacting protein 37 FKBP12 interacting protein 37,
FKBP12 interacting protein 37		 -0.67 0.33 -0.31
12 AT3G05490 ralf-like 22 ralf-like 22 -0.67 0.31 -0.32
13 AT3G53340 nuclear factor Y, subunit B10 nuclear factor Y, subunit B10 -0.66 0.33 -0.31
14 AT4G17260 Lactate/malate dehydrogenase family protein -0.66 0.31 -0.32
15 AT5G20500 Glutaredoxin family protein -0.66 0.32 -0.33
16 AT5G54750 Transport protein particle (TRAPP) component -0.66 0.32 -0.33
17 AT4G31130 Protein of unknown function (DUF1218) -0.65 0.31 -0.32
18 AT4G17430 O-fucosyltransferase family protein -0.65 0.31 -0.31
19 AT4G04970 glucan synthase-like 1 GLUCAN SYNTHASE LIKE 1, GLUCAN
SYNTHASE LIKE-1, GSL01, glucan
synthase-like 1		 0.65 0.33 -0.3
20 AT1G67350 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.65 0.3 -0.31
21 AT1G17890 NAD(P)-binding Rossmann-fold superfamily protein GER2 -0.65 0.32 -0.3
22 AT1G22450 cytochrome C oxidase 6B CYTOCHROME C OXIDASE 6B2,
cytochrome C oxidase 6B		 -0.64 0.32 -0.3
23 AT3G51100 unknown protein; Has 48 Blast hits to 48 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.32 -0.31
24 AT1G64450 Glycine-rich protein family 0.64 0.34 -0.3
25 AT1G77850 auxin response factor 17 auxin response factor 17 -0.64 0.3 -0.33
26 AT5G44030 cellulose synthase A4 cellulose synthase A4, IRREGULAR
XYLEM 5, NWS2		 0.64 0.32 -0.3
27 AT3G46920 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 0.64 0.31 -0.3
28 AT5G50960 nucleotide binding protein 35 NUCLEOTIDE BINDING PROTEIN 35,
nucleotide binding protein 35		 -0.64 0.34 -0.32
29 AT3G28200 Peroxidase superfamily protein -0.63 0.33 -0.33
30 AT5G59340 WUSCHEL related homeobox 2 WUSCHEL related homeobox 2 0.63 0.32 -0.33
31 AT3G07170 Sterile alpha motif (SAM) domain-containing protein -0.63 0.3 -0.32
32 AT3G47670 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.63 0.3 -0.32
33 AT5G55610 unknown protein; LOCATED IN: mitochondrion, chloroplast,
plastid, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.63 0.3 -0.33
34 AT3G11800 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.63 0.31 -0.32
35 AT5G03320 Protein kinase superfamily protein -0.63 0.31 -0.3
36 AT2G40765 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, mitochondrial respiratory chain complex III;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.33 -0.33
37 AT4G31770 debranching enzyme 1 ARABIDOPSIS THALIANA DEBRANCHING
ENZYME 1, debranching enzyme 1		 -0.63 0.32 -0.3
38 AT1G71940 SNARE associated Golgi protein family -0.63 0.33 -0.31
39 AT5G44730 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.63 0.35 -0.31
40 AT3G04830 Protein prenylyltransferase superfamily protein -0.62 0.31 -0.34
41 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 0.62 0.28 -0.3
42 AT4G34700 LYR family of Fe/S cluster biogenesis protein AtCIB22, B22 subunit of eukaryotic
mitochondrial Complex I		 -0.62 0.31 -0.3
43 AT1G13870 calmodulin binding;purine nucleotide binding AtKTI12, DEFORMED ROOTS AND LEAVES
1		 -0.62 0.32 -0.34
44 AT3G15710 Peptidase S24/S26A/S26B/S26C family protein -0.62 0.3 -0.31
45 AT3G13410 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.62 0.35 -0.31
46 AT2G30000 PHF5-like protein -0.62 0.33 -0.31
47 AT1G05720 selenoprotein family protein -0.62 0.3 -0.31
48 AT4G30010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39
proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.62 0.31 -0.31
49 AT3G19980 flower-specific, phytochrome-associated protein phosphatase
3		 flower-specific,
phytochrome-associated protein
phosphatase 3, EMBRYO DEFECTIVE
2736, flower-specific,
phytochrome-associated protein
phosphatase 3, SERINE/THREONINE
PROTEIN PHOSPHATASE		 -0.62 0.34 -0.33
50 AT4G20150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plasma membrane, mitochondrial respiratory
chain complex I, respiratory chain complex I; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 -0.61 0.31 -0.31
51 AT5G40640 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
19 plant structures; EXPRESSED DURING: 7 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G27390.1); Has 104 Blast hits to 102 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi -
0; Plants - 101; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.61 0.3 -0.31
52 AT3G13065 STRUBBELIG-receptor family 4 STRUBBELIG-receptor family 4 0.61 0.3 -0.32
53 AT4G35510 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G17540.3); Has 182 Blast hits
to 179 proteins in 73 species: Archae - 0; Bacteria - 87;
Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other
Eukaryotes - 19 (source: NCBI BLink).		 -0.61 0.32 -0.32
54 AT4G00300 fringe-related protein -0.61 0.31 -0.28
55 AT4G26430 COP9 signalosome subunit 6B COP9 signalosome subunit 6B -0.61 0.33 -0.32
56 AT4G37020 BEST Arabidopsis thaliana protein match is: eukaryotic
initiation factor 4A-III (TAIR:AT3G19760.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.61 0.32 -0.33
57 AT2G35910 RING/U-box superfamily protein -0.61 0.31 -0.31
58 AT5G20570 RING-box 1 RING-BOX 1, HRT1, RING-box 1,
REGULATOR OF CULLINS-1		 -0.61 0.31 -0.31
59 AT1G11130 Leucine-rich repeat protein kinase family protein SCRAMBLED, STRUBBELIG-RECEPTOR
FAMILY 9, STRUBBELIG		 0.61 0.31 -0.32
60 AT3G01340 Transducin/WD40 repeat-like superfamily protein -0.6 0.33 -0.33
61 AT5G59880 actin depolymerizing factor 3 actin depolymerizing factor 3 -0.6 0.32 -0.32
62 AT1G67230 little nuclei1 CROWDED NUCLEI 1, LITTLE NUCLEI1 0.6 0.32 -0.33
63 AT3G57340 Heat shock protein DnaJ, N-terminal with domain of unknown
function (DUF1977)		 -0.6 0.3 -0.32
64 AT1G68420 Class II aaRS and biotin synthetases superfamily protein 0.6 0.31 -0.33
65 AT1G01230 ORMDL family protein -0.6 0.31 -0.31
66 AT4G14110 COP9 signalosome, subunit CSN8 CONSTITUTIVE PHOTOMORPHOGENIC 9,
COP9 SIGNALOSOME SUBUNIT 8, EMBRYO
DEFECTIVE 143, FUSCA 7		 -0.6 0.33 -0.33
67 AT2G46540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.33 -0.3
68 AT2G04550 indole-3-butyric acid response 5 DUAL SPECIFICITY PROTEIN
PHOSPHATASE 1E, indole-3-butyric
acid response 5		 -0.6 0.31 -0.34
69 AT5G33380 transposable element gene -0.6 0.31 -0.3
70 AT5G52980 CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly
factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.6 0.32 -0.32
71 AT5G46400 Tetratricopeptide repeat (TPR)-like superfamily protein AT PRP39-2, PRP39-2 0.59 0.31 -0.32
72 AT5G62740 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 ATHIR1, AtHIR4,
HYPERSENSITIVE-INDUCED RESPONSE
PROTEIN 1, hypersensitive induced
reaction 4		 -0.59 0.33 -0.31
73 AT5G04390 C2H2-type zinc finger family protein -0.59 0.32 -0.33
74 AT2G16090 RING/U-box superfamily protein ARIADNE 2, ARABIDOPSIS ARIADNE 2 0.59 0.33 -0.31
75 AT5G27410 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 0.59 0.3 -0.3
76 AT5G52840 NADH-ubiquinone oxidoreductase-related -0.59 0.29 -0.36
77 AT4G01370 MAP kinase 4 MAP kinase 4, MAP kinase 4 -0.59 0.3 -0.32
78 AT1G28250 unknown protein; Has 22 Blast hits to 22 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.32 -0.3
79 AT5G45280 Pectinacetylesterase family protein -0.58 0.31 -0.33
80 AT5G13450 delta subunit of Mt ATP synthase delta subunit of Mt ATP synthase -0.58 0.33 -0.32
81 AT1G72020 unknown protein; Has 52 Blast hits to 52 proteins in 18
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.31 -0.31
82 AT3G52730 ubiquinol-cytochrome C reductase UQCRX/QCR9-like family
protein		 -0.58 0.32 -0.29
83 AT5G52460 FBD, F-box and Leucine Rich Repeat domains containing
protein		 embryo sac development arrest 41 0.58 0.3 -0.34
84 AT5G67590 NADH-ubiquinone oxidoreductase-related FROSTBITE1 -0.58 0.32 -0.31
85 AT3G07300 NagB/RpiA/CoA transferase-like superfamily protein -0.58 0.32 -0.32
86 AT5G43000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 -0.58 0.31 -0.31
87 AT5G43860 chlorophyllase 2 ARABIDOPSIS THALIANA
CHLOROPHYLLASE 2, chlorophyllase 2		 -0.58 0.33 -0.31
88 AT2G23080 Protein kinase superfamily protein casein kinase II, alpha chain 3 -0.58 0.31 -0.3
89 AT1G78240 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 OSU1, QUASIMODO2, TUMOROUS SHOOT
DEVELOPMENT 2		 -0.58 0.29 -0.34
90 AT2G46170 Reticulon family protein -0.58 0.3 -0.32
91 AT1G48910 Flavin-containing monooxygenase family protein YUCCA 10 0.57 0.3 -0.32
92 AT4G14820 Pentatricopeptide repeat (PPR) superfamily protein 0.57 0.32 -0.3
93 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 0.56 0.31 -0.31
94 AT4G08160 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 0.55 0.29 -0.32
95 AT3G18570 Oleosin family protein 0.53 0.31 -0.31
96 AT2G15440 Protein of unknown function (DUF579) 0.52 0.29 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
97 C0063 Campesterol - Campesterol brassinosteroid biosynthesis I,
brassinosteroid biosynthesis II,
plant sterol biosynthesis,
brassinosteroid biosynthesis III 		0.72 0.41 -0.44 C0063
98 C0212 PR_MST_2336.8 - - - 0.6 0.46 -0.46