AT4G21100 : damaged DNA binding protein 1B
Query Information
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AGICode AT4G21100
Description damaged DNA binding protein 1B
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G21100 damaged DNA binding protein 1B damaged DNA binding protein 1B 1 0.32 -0.3
2 AT5G46750 ARF-GAP domain 9 ARF-GAP domain 9 0.89 0.31 -0.32
3 AT4G21090 MITOCHONDRIAL FERREDOXIN 2 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 2, MITOCHONDRIAL
FERREDOXIN 2		 0.78 0.3 -0.32
4 AT4G28520 cruciferin 3 CRUCIFERIN C, cruciferin 3 -0.77 0.31 -0.31
5 AT2G36490 demeter-like 1 demeter-like 1, REPRESSOR OF
SILENCING1		 -0.76 0.3 -0.3
6 AT1G63430 Leucine-rich repeat protein kinase family protein -0.75 0.31 -0.32
7 AT5G44120 RmlC-like cupins superfamily protein CRUCIFERINA, CRUCIFERINA, CRU1 -0.75 0.3 -0.32
8 AT2G05920 Subtilase family protein -0.74 0.31 -0.3
9 AT3G28150 TRICHOME BIREFRINGENCE-LIKE 22 ALTERED XYLOGLUCAN 4-LIKE,
TRICHOME BIREFRINGENCE-LIKE 22		 -0.71 0.31 -0.33
10 AT3G21370 beta glucosidase 19 beta glucosidase 19 -0.71 0.29 -0.3
11 AT4G19690 iron-regulated transporter 1 ARABIDOPSIS IRON-REGULATED
TRANSPORTER 1, iron-regulated
transporter 1		 0.7 0.32 -0.32
12 AT1G63700 Protein kinase superfamily protein EMBRYO DEFECTIVE 71, MAP KINASE
KINASE KINASE 4, YODA		 -0.7 0.31 -0.32
13 AT1G63470 AT hook motif DNA-binding family protein -0.7 0.34 -0.32
14 AT5G08420 RNA-binding KH domain-containing protein 0.69 0.32 -0.35
15 AT3G47600 myb domain protein 94 myb domain protein 94, ATMYBCP70,
myb domain protein 94		 -0.68 0.31 -0.31
16 AT5G45500 RNI-like superfamily protein -0.68 0.33 -0.3
17 AT5G54740 seed storage albumin 5 seed storage albumin 5 -0.68 0.32 -0.3
18 AT1G05510 Protein of unknown function (DUF1264) -0.68 0.3 -0.33
19 AT4G25140 oleosin 1 OLEOSIN 1, oleosin 1 -0.68 0.31 -0.3
20 AT1G63490 transcription factor jumonji (jmjC) domain-containing
protein		 -0.67 0.32 -0.32
21 AT2G40170 Stress induced protein ARABIDOPSIS EARLY
METHIONINE-LABELLED 6, EARLY
METHIONINE-LABELLED 6, LATE
EMBRYOGENESIS ABUNDANT 6		 -0.67 0.29 -0.33
22 AT3G43920 dicer-like 3 DICER-LIKE 3, dicer-like 3 -0.67 0.3 -0.34
23 AT5G46760 Basic helix-loop-helix (bHLH) DNA-binding family protein MYC3 0.67 0.31 -0.31
24 AT5G46740 ubiquitin-specific protease 21 ubiquitin-specific protease 21 0.67 0.32 -0.29
25 AT2G28490 RmlC-like cupins superfamily protein -0.66 0.31 -0.31
26 AT1G33080 MATE efflux family protein -0.66 0.31 -0.31
27 AT1G63770 Peptidase M1 family protein -0.66 0.3 -0.3
28 AT1G73220 organic cation/carnitine transporter1 organic cation/carnitine
transporter1, organic
cation/carnitine transporter1		 -0.65 0.32 -0.33
29 AT5G07050 nodulin MtN21 /EamA-like transporter family protein -0.65 0.34 -0.35
30 AT5G47810 phosphofructokinase 2 phosphofructokinase 2 -0.64 0.32 -0.32
31 AT5G58530 Glutaredoxin family protein -0.64 0.32 -0.3
32 AT5G66060 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.64 0.33 -0.31
33 AT1G63690 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2,
SIGNAL PEPTIDE PEPTIDASE-LIKE 2		 -0.64 0.29 -0.3
34 AT4G30140 GDSL-like Lipase/Acylhydrolase superfamily protein CUTICLE DESTRUCTING FACTOR 1 0.64 0.32 -0.31
35 AT4G15630 Uncharacterised protein family (UPF0497) -0.63 0.32 -0.32
36 AT5G63440 Protein of unknown function (DUF167) 0.63 0.31 -0.32
37 AT1G12130 Flavin-binding monooxygenase family protein -0.63 0.31 -0.31
38 AT4G31960 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.62 0.3 -0.31
39 AT3G14650 cytochrome P450, family 72, subfamily A, polypeptide 11 cytochrome P450, family 72,
subfamily A, polypeptide 11		 -0.62 0.3 -0.31
40 AT3G07610 Transcription factor jumonji (jmjC) domain-containing
protein		 increase in bonsai methylation 1 -0.62 0.31 -0.3
41 AT1G54860 Glycoprotein membrane precursor GPI-anchored -0.62 0.33 -0.3
42 AT1G73190 Aquaporin-like superfamily protein ALPHA-TONOPLAST INTRINSIC PROTEIN,
TIP3;1		 -0.62 0.31 -0.32
43 AT5G10980 Histone superfamily protein 0.61 0.33 -0.31
44 AT5G28290 NIMA-related kinase 3 NIMA-related kinase 3,
NIMA-related kinase 3		 -0.61 0.33 -0.33
45 AT5G58940 calmodulin-binding receptor-like cytoplasmic kinase 1 calmodulin-binding receptor-like
cytoplasmic kinase 1		 -0.61 0.34 -0.33
46 AT5G57140 purple acid phosphatase 28 PURPLE ACID PHOSPHATASE 28, purple
acid phosphatase 28		 0.61 0.32 -0.31
47 AT1G48130 1-cysteine peroxiredoxin 1 1-cysteine peroxiredoxin 1,
1-cysteine peroxiredoxin 1		 -0.6 0.33 -0.31
48 AT3G57370 Cyclin family protein 0.6 0.3 -0.3
49 AT5G67360 Subtilase family protein ARA12 -0.6 0.33 -0.31
50 AT2G38530 lipid transfer protein 2 cell growth defect factor-3, LP2,
lipid transfer protein 2		 -0.59 0.32 -0.32
51 AT2G17900 SET domain group 37 ASH1-related 1, SET domain group
37		 0.59 0.32 -0.31
52 AT3G21210 zinc ion binding -0.59 0.29 -0.31
53 AT3G15670 Late embryogenesis abundant protein (LEA) family protein -0.59 0.33 -0.32
54 AT4G00780 TRAF-like family protein 0.59 0.33 -0.32
55 AT1G13600 basic leucine-zipper 58 basic leucine-zipper 58, basic
leucine-zipper 58		 -0.59 0.31 -0.34
56 AT1G54330 NAC domain containing protein 20 NAC domain containing protein 20,
NAC domain containing protein 20		 0.58 0.31 -0.32
57 AT2G16380 Sec14p-like phosphatidylinositol transfer family protein 0.58 0.32 -0.31
58 AT2G41260 glycine-rich protein / late embryogenesis abundant protein
(M17)		 ATM17, M17 -0.58 0.32 -0.31
59 AT1G67860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67865.1); Has 13 Blast hits
to 13 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.58 0.33 -0.31
60 AT3G26922 F-box/RNI-like superfamily protein 0.57 0.33 -0.32
61 AT2G34940 VACUOLAR SORTING RECEPTOR 5 binding protein of 80 kDa 3;2,
VACUOLAR SORTING RECEPTOR 3;2,
VACUOLAR SORTING RECEPTOR 5		 0.56 0.32 -0.3
62 AT1G06840 Leucine-rich repeat protein kinase family protein -0.56 0.32 -0.3
63 AT1G60090 beta glucosidase 4 beta glucosidase 4 -0.56 0.3 -0.31
64 AT3G32917 transposable element gene 0.56 0.33 -0.32
65 AT1G63970 isoprenoid F isoprenoid F,
2C-METHYL-D-ERYTHRITOL
2,4-CYCLODIPHOSPHATE SYNTHASE		 -0.56 0.32 -0.3
66 AT1G63500 Protein kinase protein with tetratricopeptide repeat domain -0.56 0.31 -0.29
67 AT4G01920 Cysteine/Histidine-rich C1 domain family protein -0.56 0.31 -0.3
68 AT1G27461 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.56 0.31 -0.31
69 AT4G18425 Protein of unknown function (DUF679) -0.56 0.31 -0.31
70 AT5G40750 FBD / Leucine Rich Repeat domains containing protein -0.55 0.31 -0.33
71 AT5G19270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G03566.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.55 0.32 -0.3
72 ATCG00220 photosystem II reaction center protein M photosystem II reaction center
protein M		 0.55 0.35 -0.3
73 AT3G21380 Mannose-binding lectin superfamily protein -0.55 0.29 -0.33
74 AT1G71250 GDSL-like Lipase/Acylhydrolase superfamily protein 0.55 0.34 -0.33
75 AT5G52480 RNI-like superfamily protein -0.55 0.32 -0.32
76 AT5G25120 ytochrome p450, family 71, subfamily B, polypeptide 11 ytochrome p450, family 71,
subfamily B, polypeptide 11		 -0.54 0.32 -0.32
77 AT1G26870 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 9, FEZ		 0.54 0.31 -0.3
78 AT2G22070 pentatricopeptide (PPR) repeat-containing protein 0.54 0.31 -0.32
79 AT5G62320 myb domain protein 99 myb domain protein 99, ATMYBCU15,
myb domain protein 99		 -0.53 0.3 -0.34
80 AT5G48340 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.53 0.3 -0.31
81 AT3G43820 pseudogene, copper amine oxidase protein family, similar to
SP|Q43077 Amine oxidase (copper-containing) precursor (EC
1.4.3.6) {Pisum sativum}; contains Pfam profile PF01179:
Copper amine oxidase, enzyme domain; blastp match of 57%
identity and 2.6e-48 P-value to
GP|5733089|gb|AAD49420.1|AF172681_1|AF172681 amine oxidase
{Canavalia lineata}		 -0.53 0.31 -0.29
82 AT5G23780 DOMAIN OF UNKNOWN FUNCTION 724 9 DOMAIN OF UNKNOWN FUNCTION 724 9,
DOMAIN OF UNKNOWN FUNCTION 724 9		 0.53 0.29 -0.31
83 AT4G05250 Ubiquitin-like superfamily protein 0.53 0.33 -0.3
84 AT1G71910 unknown protein; Has 28 Blast hits to 28 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.53 0.32 -0.31
85 AT2G13230 transposable element gene -0.53 0.32 -0.31
86 AT1G79200 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.53 0.31 -0.29
87 AT4G28090 SKU5 similar 10 SKU5 similar 10 0.53 0.33 -0.29
88 AT3G55680 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.52 0.3 -0.29
89 AT3G51070 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.52 0.33 -0.3
90 AT2G05540 Glycine-rich protein family -0.52 0.28 -0.31
91 AT5G07570 glycine/proline-rich protein 0.52 0.29 -0.32
92 AT5G65550 UDP-Glycosyltransferase superfamily protein -0.52 0.3 -0.31
93 AT2G04710 transposable element gene -0.52 0.31 -0.31
94 AT5G28490 Protein of unknown function (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS
1, ORGAN BOUNDARY 2		 -0.52 0.32 -0.33
95 AT5G01600 ferretin 1 ARABIDOPSIS THALIANA FERRETIN 1,
ferretin 1		 -0.52 0.31 -0.34
96 AT4G12160 pseudogene, 40S ribosomal protein S9 (RPS9A), ribosomal
protein S9.e - slime mold,PIR1:R3DO24; blastp match of 56%
identity and 7.2e-09 P-value to SP|P17959|RS9_TRYBB
Probable 40S ribosomal protein S9. {Trypanosoma brucei
brucei}		 -0.52 0.31 -0.33
97 AT1G57570 Mannose-binding lectin superfamily protein 0.51 0.31 -0.31
98 ATMG00450 hypothetical protein ORF106B 0.51 0.33 -0.3
99 AT1G35320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G30160.1); Has 9 Blast hits to
9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.51 0.29 -0.33
100 AT4G21620 glycine-rich protein -0.51 0.31 -0.3
101 AT2G41650 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.51 0.3 -0.33
102 AT4G14630 germin-like protein 9 germin-like protein 9 0.51 0.32 -0.3
103 AT1G60240 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 -0.51 0.33 -0.3
104 AT5G53680 RNA-binding (RRM/RBD/RNP motifs) family protein -0.5 0.3 -0.31
105 AT2G11690 transposable element gene 0.5 0.31 -0.31
106 AT5G28220 Protein prenylyltransferase superfamily protein 0.5 0.29 -0.3
107 AT1G72100 late embryogenesis abundant domain-containing protein / LEA
domain-containing protein		 -0.5 0.31 -0.3
108 AT4G27930 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.5 0.33 -0.3
109 AT5G02200 far-red-elongated hypocotyl1-like far-red-elongated hypocotyl1-like -0.5 0.31 -0.3
110 AT3G28470 Duplicated homeodomain-like superfamily protein MYB DOMAIN PROTEIN 35, DEFECTIVE
IN MERISTEM DEVELOPMENT AND
FUNCTION 1		 0.5 0.32 -0.31
111 AT2G33980 nudix hydrolase homolog 22 nudix hydrolase homolog 22, nudix
hydrolase homolog 22		 0.49 0.3 -0.32
112 AT5G54850 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.48 0.3 -0.32
113 AT1G76910 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 0.48 0.31 -0.34
114 AT5G22970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G60000.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.48 0.31 -0.31
115 AT3G23350 ENTH/VHS family protein 0.47 0.31 -0.29
116 AT1G30150 transposable element gene 0.47 0.32 -0.32
117 AT1G44070 transposable element gene 0.47 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
118 C0198 Phosphatidylethanolamine-34:0 - - - -0.83 0.43 -0.46
119 C0012 n-Eicosanoic acid - Arachidate fatty acid activation,
fatty acid ω-oxidation,
sporopollenin precursor biosynthesis,
acyl-ACP thioesterase pathway,
ceramide degradation,
fatty acid α-oxidation,
fatty acid ω-oxidation,
phospholipases,
triacylglycerol degradation 		-0.75 0.42 -0.41 C0012
120 C0086 Disinapylspermidine - - - -0.71 0.41 -0.44
121 C0172 MST_2214.3 - - - 0.64 0.45 -0.46
122 C0001 α-Linolenic acid - (9,12,15)-Linolenate traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
poly-hydroxy fatty acids biosynthesis,
jasmonic acid biosynthesis 		-0.63 0.41 -0.44 C0001