AT4G20440 : small nuclear ribonucleoprotein associated protein B.....
Query Information
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AGICode AT4G20440
Description small nuclear ribonucleoprotein associated protein B
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G20440 small nuclear ribonucleoprotein associated protein B small nuclear ribonucleoprotein
associated protein B		 1 0.32 -0.34
2 AT1G12270 stress-inducible protein, putative Hop1 0.89 0.29 -0.32
3 AT3G20050 T-complex protein 1 alpha subunit T-complex protein 1 alpha subunit,
T-complex protein 1 alpha subunit		 0.88 0.31 -0.3
4 AT1G56110 homolog of nucleolar protein NOP56 homolog of nucleolar protein NOP56 0.87 0.33 -0.3
5 AT1G29250 Alba DNA/RNA-binding protein 0.87 0.33 -0.3
6 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family
protein		 0.86 0.32 -0.32
7 AT4G01560 Ribosomal RNA processing Brix domain protein maternal effect embryo arrest 49 0.86 0.31 -0.32
8 AT3G51800 metallopeptidase M24 family protein A. THALIANA ERBB-3 BINDING PROTEIN
1, ATG2, ERBB-3 BINDING PROTEIN 1		 0.86 0.32 -0.32
9 AT3G16780 Ribosomal protein L19e family protein 0.86 0.33 -0.33
10 AT5G26360 TCP-1/cpn60 chaperonin family protein 0.86 0.32 -0.33
11 AT1G18540 Ribosomal protein L6 family protein 0.86 0.31 -0.35
12 AT4G25630 fibrillarin 2 ATFIB2, fibrillarin 2 0.86 0.33 -0.31
13 AT1G04340 HR-like lesion-inducing protein-related 0.85 0.29 -0.32
14 AT4G34555 Ribosomal protein S25 family protein 0.85 0.31 -0.32
15 AT4G17520 Hyaluronan / mRNA binding family 0.85 0.32 -0.32
16 AT4G10480 Nascent polypeptide-associated complex (NAC), alpha subunit
family protein		 0.85 0.32 -0.3
17 AT2G20450 Ribosomal protein L14 0.85 0.3 -0.3
18 AT4G10450 Ribosomal protein L6 family 0.85 0.3 -0.31
19 AT3G03920 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.85 0.33 -0.31
20 AT5G44340 tubulin beta chain 4 tubulin beta chain 4 0.85 0.32 -0.32
21 AT5G20890 TCP-1/cpn60 chaperonin family protein 0.85 0.32 -0.29
22 AT3G54650 RNI-like superfamily protein FBL17 0.84 0.31 -0.3
23 AT1G28395 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast
hits to 89 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.84 0.3 -0.31
24 AT5G05470 eukaryotic translation initiation factor 2 alpha subunit ATEIF2-A2, eukaryotic translation
initiation factor 2 alpha subunit,
EIF2-A2		 0.84 0.3 -0.33
25 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.84 0.33 -0.31
26 AT3G44750 histone deacetylase 3 ATHD2A, HISTONE DEACETYLASE 2A,
histone deacetylase 3, HDT1		 0.84 0.31 -0.3
27 AT4G00100 ribosomal protein S13A ribosomal protein S13A, POINTED
FIRST LEAF 2, RPS13, ribosomal
protein S13A		 0.84 0.31 -0.32
28 AT2G39390 Ribosomal L29 family protein 0.84 0.33 -0.32
29 AT3G11710 lysyl-tRNA synthetase 1 lysyl-tRNA synthetase 1 0.83 0.33 -0.29
30 AT3G23620 Ribosomal RNA processing Brix domain protein 0.83 0.32 -0.32
31 AT3G62120 Class II aaRS and biotin synthetases superfamily protein 0.83 0.34 -0.3
32 AT5G22440 Ribosomal protein L1p/L10e family 0.83 0.32 -0.3
33 AT3G13920 eukaryotic translation initiation factor 4A1 eukaryotic translation initiation
factor 4A1, RH4, TIF4A1		 0.83 0.3 -0.34
34 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).		 0.83 0.3 -0.31
35 AT5G22650 histone deacetylase 2B ARABIDOPSIS HISTONE DEACETYLASE 2,
ATHD2B, HISTONE DEACETYLASE 2,
histone deacetylase 2B, HDA4,
HDT02, HDT2		 0.83 0.32 -0.33
36 AT2G22400 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.82 0.33 -0.3
37 AT3G57290 eukaryotic translation initiation factor 3E ATEIF3E-1, ATINT6, eukaryotic
translation initiation factor 3E,
INT-6, INT6, TIF3E1		 0.82 0.33 -0.33
38 AT5G35530 Ribosomal protein S3 family protein 0.82 0.32 -0.31
39 AT5G61770 PETER PAN-like protein PETER PAN-like protein 0.82 0.3 -0.3
40 AT3G55010 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast
/ phosphoribosyl-aminoimidazole synthetase / AIR synthase
(PUR5)		 ATPURM, EMBRYO DEFECTIVE 2818,
PUR5		 0.82 0.33 -0.29
41 AT5G56670 Ribosomal protein S30 family protein 0.82 0.3 -0.33
42 AT1G02780 Ribosomal protein L19e family protein embryo defective 2386 0.82 0.31 -0.32
43 AT3G49080 Ribosomal protein S5 domain 2-like superfamily protein 0.82 0.31 -0.31
44 AT1G21410 F-box/RNI-like superfamily protein SKP2A -0.82 0.32 -0.31
45 AT1G34130 staurosporin and temperature sensitive 3-like b staurosporin and temperature
sensitive 3-like b		 0.82 0.32 -0.32
46 AT1G20220 Alba DNA/RNA-binding protein 0.82 0.3 -0.33
47 AT1G47960 cell wall / vacuolar inhibitor of fructosidase 1 CELL WALL / VACUOLAR INHIBITOR OF
FRUCTOSIDASE 1, cell wall /
vacuolar inhibitor of fructosidase
1		 -0.82 0.3 -0.31
48 AT3G03960 TCP-1/cpn60 chaperonin family protein 0.82 0.31 -0.33
49 AT4G17840 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast,
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Abortive infection protein (InterPro:IPR003675); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.81 0.33 -0.3
50 AT3G07910 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Reactive oxygen species modulator 1 (InterPro:IPR018450);
Has 192 Blast hits to 192 proteins in 80 species: Archae -
0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		 0.81 0.29 -0.32
51 AT4G11420 eukaryotic translation initiation factor 3A ATEIF3A-1, ATTIF3A1, eukaryotic
translation initiation factor 3A,
EIF3A-1, TIF3A1		 0.81 0.32 -0.3
52 AT3G57000 nucleolar essential protein-related 0.81 0.31 -0.33
53 AT1G08360 Ribosomal protein L1p/L10e family 0.81 0.32 -0.32
54 AT1G17560 Ribosomal protein L14p/L23e family protein HUELLENLOS 0.81 0.32 -0.33
55 AT2G28600 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.81 0.34 -0.32
56 AT5G61840 Exostosin family protein GUT1 0.81 0.32 -0.31
57 AT1G24510 TCP-1/cpn60 chaperonin family protein 0.81 0.31 -0.31
58 AT5G16070 TCP-1/cpn60 chaperonin family protein 0.81 0.3 -0.33
59 AT1G20950 Phosphofructokinase family protein 0.81 0.31 -0.31
60 AT1G49760 poly(A) binding protein 8 poly(A) binding protein 8, POLY(A)
BINDING PROTEIN 8		 0.81 0.33 -0.33
61 AT5G08180 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.81 0.33 -0.3
62 AT5G26710 Glutamyl/glutaminyl-tRNA synthetase, class Ic 0.81 0.3 -0.27
63 AT1G49600 RNA-binding protein 47A RNA-binding protein 47A,
RNA-binding protein 47A		 0.81 0.29 -0.31
64 AT1G79650 Rad23 UV excision repair protein family Arabidopsis thaliana aldehyde
oxidase 1, RADIATION SENSITIVE23B		 0.81 0.33 -0.31
65 AT3G62940 Cysteine proteinases superfamily protein 0.81 0.31 -0.31
66 AT2G20490 nucleolar RNA-binding Nop10p family protein EMBRYO SAC DEVELOPMENT ARREST 27,
NOP10		 0.81 0.33 -0.32
67 AT4G28490 Leucine-rich receptor-like protein kinase family protein HAESA, RECEPTOR-LIKE PROTEIN
KINASE 5		 -0.81 0.31 -0.35
68 AT5G50810 translocase inner membrane subunit 8 translocase inner membrane subunit
8		 0.81 0.3 -0.32
69 AT1G64880 Ribosomal protein S5 family protein 0.8 0.31 -0.32
70 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.8 0.31 -0.31
71 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 0.8 0.33 -0.3
72 AT5G61020 evolutionarily conserved C-terminal region 3 evolutionarily conserved
C-terminal region 3		 0.8 0.31 -0.31
73 AT3G56150 eukaryotic translation initiation factor 3C ATEIF3C-1, ATTIF3C1, eukaryotic
translation initiation factor 3C,
EIF3C-1, TIF3C1		 0.8 0.3 -0.3
74 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 -0.8 0.33 -0.3
75 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.8 0.33 -0.32
76 AT5G62440 Protein of unknown function (DUF3223) 0.8 0.33 -0.32
77 AT2G40290 Eukaryotic translation initiation factor 2 subunit 1 0.8 0.32 -0.33
78 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.8 0.32 -0.3
79 AT4G16520 Ubiquitin-like superfamily protein autophagy 8f -0.79 0.33 -0.31
80 AT3G08860 PYRIMIDINE 4 PYRIMIDINE 4 -0.79 0.32 -0.31
81 AT4G36210 Protein of unknown function (DUF726) -0.79 0.31 -0.32
82 AT4G13530 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G10080.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.79 0.3 -0.33
83 AT3G23920 beta-amylase 1 beta-amylase 1, BETA-AMYLASE 7,
TR-BAMY		 -0.78 0.32 -0.31
84 AT1G08230 Transmembrane amino acid transporter family protein ATGAT1, L-GAMMA-AMINOBUTYRIC ACID
TRANSPORTER 1		 -0.78 0.3 -0.31
85 AT3G44880 Pheophorbide a oxygenase family protein with Rieske
[2Fe-2S] domain		 ACCELERATED CELL DEATH 1, LETHAL
LEAF-SPOT 1 HOMOLOG, PHEOPHORBIDE
A OXYGENASE		 -0.78 0.32 -0.3
86 AT5G23050 acyl-activating enzyme 17 acyl-activating enzyme 17 -0.77 0.31 -0.3
87 AT3G51730 saposin B domain-containing protein -0.77 0.3 -0.33
88 AT1G62540 flavin-monooxygenase glucosinolate S-oxygenase 2 flavin-monooxygenase glucosinolate
S-oxygenase 2		 -0.77 0.3 -0.31
89 AT1G21000 PLATZ transcription factor family protein -0.76 0.31 -0.29
90 AT3G12520 sulfate transporter 4;2 sulfate transporter 4;2 -0.76 0.33 -0.32
91 AT1G73980 Phosphoribulokinase / Uridine kinase family -0.76 0.32 -0.29
92 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11		 -0.76 0.3 -0.33
93 AT5G63080 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.76 0.34 -0.31
94 AT3G19990 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 118 Blast hits to 118 proteins in 41 species: Archae -
0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56;
Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).		 -0.76 0.32 -0.3
95 AT1G64370 unknown protein; Has 773 Blast hits to 375 proteins in 118
species: Archae - 0; Bacteria - 97; Metazoa - 421; Fungi -
108; Plants - 31; Viruses - 0; Other Eukaryotes - 116
(source: NCBI BLink).		 -0.76 0.33 -0.34
96 AT5G22270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits
to 136 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.76 0.29 -0.3
97 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 -0.76 0.31 -0.31
98 AT1G28260 Telomerase activating protein Est1 -0.76 0.35 -0.32
99 AT1G59700 glutathione S-transferase TAU 16 glutathione S-transferase TAU 16,
glutathione S-transferase TAU 16		 -0.75 0.32 -0.32
100 AT3G07350 Protein of unknown function (DUF506) -0.75 0.32 -0.33
101 AT5G37670 HSP20-like chaperones superfamily protein -0.75 0.29 -0.3
102 AT4G03200 catalytics -0.75 0.3 -0.32
103 AT5G16550 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.75 0.32 -0.32
104 AT4G19960 K+ uptake permease 9 ATKUP9, HAK9, KT9, K+ uptake
permease 9		 -0.75 0.33 -0.3
105 AT1G58180 beta carbonic anhydrase 6 A. THALIANA BETA CARBONIC
ANHYDRASE 6, beta carbonic
anhydrase 6		 -0.75 0.31 -0.3
106 AT3G58170 BET1P/SFT1P-like protein 14A ATBET11, ARABIDOPSIS THALIANA
BET1P/SFT1P-LIKE PROTEIN 14A,
BET11, BET1P/SFT1P-like protein
14A		 -0.75 0.31 -0.32
107 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 -0.74 0.33 -0.33
108 AT5G01670 NAD(P)-linked oxidoreductase superfamily protein -0.74 0.3 -0.31
109 AT3G60140 Glycosyl hydrolase superfamily protein BETA GLUCOSIDASE 30, DARK
INDUCIBLE 2, SENESCENCE-RELATED
GENE 2		 -0.74 0.32 -0.33
110 AT1G02305 Cysteine proteinases superfamily protein -0.74 0.31 -0.32
111 AT5G08380 alpha-galactosidase 1 alpha-galactosidase 1,
alpha-galactosidase 1		 -0.74 0.31 -0.33
112 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8		 -0.73 0.31 -0.33
113 AT2G40830 RING-H2 finger C1A RING-H2 finger C1A -0.73 0.31 -0.31
114 AT3G48690 alpha/beta-Hydrolases superfamily protein ARABIDOPSIS THALIANA
CARBOXYESTERASE 12, CXE12		 -0.73 0.32 -0.31
115 AT5G04080 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 16 plant structures; EXPRESSED
DURING: 9 growth stages; Has 115 Blast hits to 115 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.72 0.33 -0.32
116 AT1G19650 Sec14p-like phosphatidylinositol transfer family protein -0.72 0.31 -0.31
117 AT1G16730 unknown protein 6 unknown protein 6 -0.72 0.32 -0.33
118 AT1G62040 Ubiquitin-like superfamily protein autophagy 8c -0.72 0.3 -0.34
119 AT2G28400 Protein of unknown function, DUF584 -0.72 0.32 -0.31
120 AT1G30260 BEST Arabidopsis thaliana protein match is:
Galactosyltransferase family protein (TAIR:AT4G21060.1);
Has 30 Blast hits to 30 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.32 -0.32
121 AT1G30220 inositol transporter 2 ARABIDOPSIS THALIANA INOSITOL
TRANSPORTER 2, inositol
transporter 2		 -0.72 0.31 -0.31
122 AT5G45350 proline-rich family protein -0.71 0.32 -0.31
123 AT1G73740 UDP-Glycosyltransferase superfamily protein -0.71 0.33 -0.32
124 AT4G12580 unknown protein; Has 24 Blast hits to 18 proteins in 5
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 15 (source:
NCBI BLink).		 -0.71 0.32 -0.29
125 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein -0.71 0.31 -0.32
126 AT3G46110 Domain of unknown function (DUF966) -0.71 0.32 -0.34
127 AT2G30550 alpha/beta-Hydrolases superfamily protein -0.71 0.34 -0.33
128 AT4G19840 phloem protein 2-A1 phloem protein 2-A1, phloem
protein 2-A1, phloem protein 2-A1		 -0.71 0.28 -0.28
129 AT4G24450 phosphoglucan, water dikinase ATGWD2, GWD3, phosphoglucan, water
dikinase		 -0.7 0.34 -0.34
130 AT3G54360 zinc ion binding -0.7 0.3 -0.31
131 AT3G01200 PPDK regulatory protein 2 PPDK regulatory protein 2, PPDK
regulatory protein 2		 -0.7 0.29 -0.29
132 AT4G14020 Rapid alkalinization factor (RALF) family protein -0.7 0.31 -0.29
133 AT3G06170 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 -0.69 0.32 -0.31
134 AT1G73040 Mannose-binding lectin superfamily protein -0.69 0.3 -0.33
135 AT3G60810 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1499 (InterPro:IPR010865); Has 444
Blast hits to 444 proteins in 143 species: Archae - 0;
Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51;
Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).		 -0.69 0.32 -0.3
136 AT4G26160 atypical CYS HIS rich thioredoxin 1 atypical CYS HIS rich thioredoxin
1		 -0.69 0.31 -0.31
137 AT3G21750 UDP-glucosyl transferase 71B1 UDP-glucosyl transferase 71B1 -0.69 0.32 -0.3
138 AT5G57040 Lactoylglutathione lyase / glyoxalase I family protein -0.69 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
139 C0217 Putative glucosinole - - - 0.89 0.46 -0.47