AT4G20360 : ATRAB8D
Query Information
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AGICode AT4G20360
Description RAB GTPase homolog E1B
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 1 0.3 -0.34
2 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.94 0.35 -0.32
3 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.93 0.32 -0.31
4 AT2G43030 Ribosomal protein L3 family protein 0.93 0.31 -0.32
5 AT2G06520 photosystem II subunit X photosystem II subunit X 0.93 0.3 -0.31
6 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.93 0.32 -0.32
7 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.92 0.31 -0.32
8 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.92 0.32 -0.31
9 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.92 0.33 -0.3
10 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.92 0.32 -0.31
11 AT1G06680 photosystem II subunit P-1 OXYGEN EVOLVING COMPLEX SUBUNIT 23
KDA, OXYGEN-EVOLVING ENHANCER
PROTEIN 2, photosystem II subunit
P-1, PHOTOSYSTEM II SUBUNIT P		 0.92 0.3 -0.3
12 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.92 0.32 -0.32
13 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.92 0.32 -0.32
14 AT1G14345 NAD(P)-linked oxidoreductase superfamily protein 0.92 0.31 -0.3
15 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.92 0.31 -0.32
16 AT3G54210 Ribosomal protein L17 family protein 0.91 0.31 -0.31
17 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.91 0.31 -0.33
18 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.91 0.29 -0.33
19 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.91 0.33 -0.33
20 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.32 -0.31
21 AT5G57930 Arabidopsis thaliana protein of unknown function (DUF794) ACCUMULATION OF PHOTOSYSTEM ONE 2,
embryo defective 1629		 0.91 0.3 -0.28
22 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.31 -0.32
23 AT5G52970 thylakoid lumen 15.0 kDa protein 0.91 0.32 -0.32
24 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.91 0.34 -0.32
25 AT5G65220 Ribosomal L29 family protein 0.9 0.31 -0.32
26 AT4G17740 Peptidase S41 family protein 0.9 0.3 -0.33
27 AT3G01480 cyclophilin 38 ARABIDOPSIS CYCLOPHILIN 38,
cyclophilin 38		 0.9 0.31 -0.3
28 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.9 0.31 -0.32
29 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.9 0.34 -0.34
30 AT3G23700 Nucleic acid-binding proteins superfamily 0.9 0.33 -0.31
31 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.9 0.31 -0.33
32 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.9 0.32 -0.32
33 AT4G21280 photosystem II subunit QA PHOTOSYSTEM II SUBUNIT Q,
PHOTOSYSTEM II SUBUNIT Q-1,
photosystem II subunit QA		 0.9 0.32 -0.31
34 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.9 0.34 -0.32
35 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.9 0.35 -0.31
36 AT4G26370 antitermination NusB domain-containing protein 0.9 0.29 -0.31
37 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.9 0.31 -0.32
38 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 0.9 0.33 -0.32
39 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.9 0.3 -0.31
40 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.9 0.33 -0.34
41 AT1G53520 Chalcone-flavanone isomerase family protein 0.9 0.33 -0.32
42 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.9 0.3 -0.34
43 AT5G63050 embryo defective 2759 embryo defective 2759 0.9 0.29 -0.33
44 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.9 0.32 -0.32
45 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.9 0.31 -0.33
46 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.9 0.33 -0.3
47 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.9 0.34 -0.31
48 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.89 0.3 -0.32
49 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.89 0.32 -0.33
50 AT3G12930 Lojap-related protein 0.89 0.32 -0.31
51 AT3G51510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 42 Blast hits to 42 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.89 0.34 -0.32
52 AT5G66470 RNA binding;GTP binding 0.89 0.32 -0.31
53 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.89 0.32 -0.3
54 AT4G38970 fructose-bisphosphate aldolase 2 fructose-bisphosphate aldolase 2 0.89 0.32 -0.31
55 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.89 0.31 -0.33
56 AT4G03280 photosynthetic electron transfer C photosynthetic electron transfer
C, PROTON GRADIENT REGULATION 1		 0.89 0.33 -0.32
57 AT2G28605 Photosystem II reaction center PsbP family protein 0.89 0.33 -0.32
58 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.89 0.3 -0.33
59 AT1G15690 Inorganic H pyrophosphatase family protein ARABIDOPSIS THALIANA V-PPASE 3,
AtVHP1;1, AVP-3, AVP1, FUGU 5		 0.89 0.32 -0.31
60 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.89 0.33 -0.3
61 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.89 0.32 -0.32
62 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.89 0.33 -0.33
63 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.89 0.31 -0.32
64 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.89 0.31 -0.3
65 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.89 0.32 -0.29
66 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.89 0.32 -0.33
67 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.89 0.32 -0.33
68 AT3G20230 Ribosomal L18p/L5e family protein 0.89 0.33 -0.3
69 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.89 0.33 -0.32
70 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.89 0.33 -0.32
71 AT1G14030 Rubisco methyltransferase family protein 0.89 0.32 -0.31
72 AT1G08380 photosystem I subunit O photosystem I subunit O 0.88 0.3 -0.34
73 AT2G39730 rubisco activase rubisco activase 0.88 0.32 -0.3
74 AT1G03600 photosystem II family protein PSB27 0.88 0.35 -0.32
75 AT3G28460 methyltransferases 0.88 0.33 -0.32
76 AT1G30380 photosystem I subunit K photosystem I subunit K 0.88 0.31 -0.32
77 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.88 0.31 -0.31
78 AT4G02770 photosystem I subunit D-1 photosystem I subunit D-1 0.88 0.3 -0.31
79 AT1G31330 photosystem I subunit F photosystem I subunit F 0.88 0.31 -0.31
80 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.88 0.31 -0.31
81 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.88 0.32 -0.32
82 AT1G70730 Phosphoglucomutase/phosphomannomutase family protein phosphoglucomutase 2 0.88 0.32 -0.33
83 AT5G66570 PS II oxygen-evolving complex 1 MANGANESE-STABILIZING PROTEIN 1,
OXYGEN EVOLVING COMPLEX 33
KILODALTON PROTEIN, 33 KDA OXYGEN
EVOLVING POLYPEPTIDE 1, OXYGEN
EVOLVING ENHANCER PROTEIN 33, PS
II OXYGEN-EVOLVING COMPLEX 1, PS
II oxygen-evolving complex 1		 0.88 0.28 -0.33
84 AT1G64680 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits
to 146 proteins in 26 species: Archae - 0; Bacteria - 6;
Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 0.88 0.3 -0.31
85 AT2G26500 cytochrome b6f complex subunit (petM), putative 0.88 0.32 -0.31
86 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.88 0.31 -0.33
87 AT5G11270 overexpressor of cationic peroxidase 3 overexpressor of cationic
peroxidase 3		 0.88 0.32 -0.31
88 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.3 -0.33
89 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.87 0.32 -0.31
90 AT4G34730 ribosome-binding factor A family protein 0.87 0.3 -0.33
91 AT4G34290 SWIB/MDM2 domain superfamily protein 0.87 0.3 -0.31
92 AT5G55740 Tetratricopeptide repeat (TPR)-like superfamily protein chlororespiratory reduction 21 0.87 0.32 -0.33
93 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.31 -0.31
94 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.87 0.31 -0.32
95 AT5G35630 glutamine synthetase 2 GLUTAMINE SYNTHETASE LIKE 1,
GLUTAMINE SYNTHETASE 2, glutamine
synthetase 2		 0.87 0.29 -0.32
96 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.87 0.33 -0.3
97 AT4G10340 light harvesting complex of photosystem II 5 light harvesting complex of
photosystem II 5		 0.87 0.31 -0.32
98 AT3G04760 Pentatricopeptide repeat (PPR-like) superfamily protein 0.87 0.31 -0.32
99 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.87 0.31 -0.34
100 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.87 0.31 -0.3
101 AT4G37510 Ribonuclease III family protein 0.87 0.31 -0.33
102 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.87 0.33 -0.3
103 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.87 0.31 -0.33
104 AT1G29070 Ribosomal protein L34 0.87 0.32 -0.34
105 AT2G21860 violaxanthin de-epoxidase-related 0.87 0.33 -0.31
106 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.87 0.33 -0.32
107 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.87 0.33 -0.31
108 AT3G25610 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.83 0.35 -0.35
109 AT5G25930 Protein kinase family protein with leucine-rich repeat
domain		 -0.81 0.31 -0.34
110 AT3G25290 Auxin-responsive family protein -0.8 0.32 -0.32
111 AT1G78660 gamma-glutamyl hydrolase 1 gamma-glutamyl hydrolase 1,
gamma-glutamyl hydrolase 1		 -0.79 0.29 -0.32
112 AT2G17500 Auxin efflux carrier family protein -0.78 0.32 -0.33
113 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.78 0.29 -0.33
114 AT5G06750 Protein phosphatase 2C family protein -0.78 0.31 -0.32
115 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.77 0.3 -0.33
116 AT2G02370 SNARE associated Golgi protein family -0.77 0.3 -0.32
117 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.76 0.31 -0.31
118 AT2G27450 nitrilase-like protein 1 ATNLP1, CPA, nitrilase-like
protein 1		 -0.75 0.33 -0.3
119 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.75 0.32 -0.32
120 AT5G47050 SBP (S-ribonuclease binding protein) family protein -0.75 0.33 -0.31
121 AT2G44500 O-fucosyltransferase family protein -0.75 0.31 -0.31
122 AT5G23580 calmodulin-like domain protein kinase 9 ARABIDOPSIS THALIANA
CALMODULIN-LIKE DOMAIN PROTEIN
KINASE 9, ATCPK12, calmodulin-like
domain protein kinase 9,
CALCIUM-DEPENDENT PROTEIN KINASE
12		 -0.74 0.33 -0.31
123 AT3G25010 receptor like protein 41 receptor like protein 41, receptor
like protein 41		 -0.74 0.31 -0.33
124 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.74 0.33 -0.32
125 AT5G09980 elicitor peptide 4 precursor elicitor peptide 4 precursor -0.74 0.31 -0.32
126 AT1G72900 Toll-Interleukin-Resistance (TIR) domain-containing protein -0.74 0.31 -0.3
127 AT4G16110 response regulator 2 response regulator 2, response
regulator 2		 -0.73 0.31 -0.32
128 AT1G31130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in
29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi -
0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 -0.72 0.31 -0.33
129 AT3G11840 plant U-box 24 plant U-box 24 -0.72 0.3 -0.32
130 AT4G33780 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40
Blast hits to 40 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.33 -0.32
131 AT4G28300 Protein of unknown function (DUF1421) -0.72 0.29 -0.32
132 AT3G25250 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 AGC2, AGC2-1, AtOXI1, oxidative
signal-inducible1		 -0.72 0.34 -0.31
133 AT3G54950 patatin-like protein 6 patatin-like protein 6,
PATATIN-LIKE PROTEIN 7,
patatin-related phospholipase
IIIbeta		 -0.71 0.31 -0.32
134 AT4G23270 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 cysteine-rich RLK (RECEPTOR-like
protein kinase) 19		 -0.71 0.32 -0.32
135 AT1G28480 Thioredoxin superfamily protein GRX480, roxy19 -0.71 0.31 -0.3
136 AT1G70530 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 cysteine-rich RLK (RECEPTOR-like
protein kinase) 3		 -0.71 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
137 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.8 0.44 -0.45 C0051