AT4G20130 : plastid transcriptionally active 14
Query Information
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AGICode AT4G20130
Description plastid transcriptionally active 14
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 1 0.3 -0.31
2 AT4G34290 SWIB/MDM2 domain superfamily protein 0.94 0.3 -0.32
3 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.94 0.31 -0.32
4 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.93 0.3 -0.33
5 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.93 0.34 -0.33
6 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.93 0.32 -0.33
7 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.92 0.3 -0.33
8 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.92 0.31 -0.32
9 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.92 0.32 -0.32
10 AT4G26370 antitermination NusB domain-containing protein 0.92 0.3 -0.33
11 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.92 0.3 -0.3
12 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.91 0.32 -0.31
13 AT5G65220 Ribosomal L29 family protein 0.91 0.33 -0.34
14 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.91 0.3 -0.31
15 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.91 0.29 -0.3
16 AT3G29185 Domain of unknown function (DUF3598) 0.91 0.3 -0.35
17 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.91 0.31 -0.32
18 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.91 0.31 -0.32
19 AT3G13120 Ribosomal protein S10p/S20e family protein 0.91 0.32 -0.32
20 AT4G37510 Ribonuclease III family protein 0.91 0.34 -0.31
21 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.91 0.31 -0.33
22 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.91 0.3 -0.32
23 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.91 0.31 -0.31
24 AT5G46420 16S rRNA processing protein RimM family 0.91 0.31 -0.31
25 AT2G45270 glycoprotease 1 glycoprotease 1 0.9 0.31 -0.31
26 AT3G54210 Ribosomal protein L17 family protein 0.9 0.29 -0.31
27 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.9 0.32 -0.32
28 AT3G28460 methyltransferases 0.9 0.29 -0.28
29 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.9 0.29 -0.31
30 AT2G33450 Ribosomal L28 family 0.9 0.31 -0.32
31 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.9 0.32 -0.32
32 AT3G12930 Lojap-related protein 0.9 0.32 -0.31
33 AT3G12080 GTP-binding family protein embryo defective 2738 0.9 0.31 -0.31
34 AT5G47190 Ribosomal protein L19 family protein 0.9 0.33 -0.32
35 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.9 0.3 -0.31
36 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.9 0.32 -0.33
37 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.9 0.33 -0.3
38 AT1G14270 CAAX amino terminal protease family protein 0.9 0.32 -0.32
39 AT4G24750 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.9 0.31 -0.3
40 AT4G17740 Peptidase S41 family protein 0.89 0.33 -0.32
41 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 0.89 0.3 -0.31
42 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.89 0.3 -0.3
43 AT3G19810 Protein of unknown function (DUF177) 0.89 0.31 -0.3
44 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.89 0.31 -0.32
45 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.89 0.3 -0.29
46 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.89 0.31 -0.31
47 AT1G13270 methionine aminopeptidase 1B METHIONINE AMINOPEPTIDASE 1B,
methionine aminopeptidase 1B		 0.89 0.3 -0.31
48 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.89 0.32 -0.3
49 AT5G03940 chloroplast signal recognition particle 54 kDa subunit 54 CHLOROPLAST PROTEIN,
chloroplast signal recognition
particle 54 kDa subunit,
FIFTY-FOUR CHLOROPLAST HOMOLOGUE,
SIGNAL RECOGNITION PARTICLE 54 KDA
SUBUNIT CHLOROPLAST PROTEIN		 0.89 0.32 -0.31
50 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.89 0.35 -0.31
51 AT3G12685 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.89 0.32 -0.31
52 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.89 0.32 -0.32
53 AT2G24060 Translation initiation factor 3 protein 0.89 0.31 -0.33
54 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.89 0.33 -0.31
55 AT1G64355 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3593 (InterPro:IPR021995);
Has 301 Blast hits to 301 proteins in 96 species: Archae -
0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 0.89 0.34 -0.31
56 AT3G20230 Ribosomal L18p/L5e family protein 0.89 0.33 -0.3
57 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.89 0.32 -0.29
58 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.89 0.3 -0.32
59 AT2G18710 SECY homolog 1 SECY homolog 1 0.89 0.3 -0.32
60 AT5G52970 thylakoid lumen 15.0 kDa protein 0.89 0.33 -0.31
61 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.89 0.32 -0.31
62 AT2G31890 RAP ATRAP, RAP 0.89 0.32 -0.32
63 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.88 0.32 -0.33
64 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.88 0.31 -0.32
65 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.88 0.32 -0.3
66 AT1G36390 Co-chaperone GrpE family protein 0.88 0.32 -0.31
67 AT3G47450 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATNOA1, ATNOS1, NO ASSOCIATED 1,
NITRIC OXIDE SYNTHASE 1, RESISTANT
TO INHIBITION WITH FOSMIDOMYCIN 1		 0.88 0.31 -0.32
68 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.88 0.33 -0.29
69 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.88 0.3 -0.33
70 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.88 0.32 -0.3
71 AT4G17560 Ribosomal protein L19 family protein 0.88 0.31 -0.31
72 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.88 0.3 -0.31
73 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.88 0.3 -0.31
74 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.88 0.34 -0.32
75 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.88 0.31 -0.31
76 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.88 0.31 -0.33
77 AT1G49380 cytochrome c biogenesis protein family 0.88 0.32 -0.32
78 AT2G43030 Ribosomal protein L3 family protein 0.88 0.33 -0.28
79 AT5G63050 embryo defective 2759 embryo defective 2759 0.88 0.32 -0.32
80 AT4G30620 Uncharacterised BCR, YbaB family COG0718 0.88 0.32 -0.3
81 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.31 -0.31
82 AT1G14410 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 1, PTAC1,
WHIRLY 1		 0.88 0.31 -0.33
83 AT2G41340 RNA polymerase II fifth largest subunit, D RNA polymerase II fifth largest
subunit, D		 0.88 0.33 -0.33
84 AT2G47940 DEGP protease 2 DEGP protease 2, EMBRYO DEFECTIVE
3117		 0.87 0.34 -0.32
85 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.87 0.31 -0.3
86 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.3 -0.36
87 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.87 0.3 -0.31
88 AT1G11430 plastid developmental protein DAG, putative 0.87 0.31 -0.34
89 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.87 0.31 -0.3
90 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.87 0.32 -0.31
91 AT5G57170 Tautomerase/MIF superfamily protein 0.87 0.33 -0.31
92 AT2G26550 heme oxygenase 2 heme oxygenase 2 0.87 0.31 -0.32
93 AT5G55220 trigger factor type chaperone family protein 0.87 0.33 -0.32
94 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.87 0.32 -0.32
95 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.87 0.31 -0.29
96 AT4G34090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.87 0.32 -0.33
97 AT3G25290 Auxin-responsive family protein -0.83 0.3 -0.31
98 AT5G20960 aldehyde oxidase 1 aldehyde oxidase 1, aldehyde
oxidase 1, aldehyde oxidase alpha,
ARABIDOPSIS THALIANA ALDEHYDE
OXIDASE 1, ATAO, Arabidopsis
thaliana aldehyde oxidase 1		 -0.76 0.31 -0.31
99 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.74 0.34 -0.3
100 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.74 0.32 -0.33
101 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.73 0.31 -0.33
102 AT5G61450 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.73 0.31 -0.34
103 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.72 0.34 -0.28
104 AT2G41850 polygalacturonase abscission zone A. thaliana ARABIDOPSIS DEHISCENCE ZONE
POLYGALACTURONASE 2,
polygalacturonase abscission zone
A. thaliana		 -0.71 0.32 -0.31
105 AT3G49350 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.7 0.31 -0.33
106 AT5G59530 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.7 0.3 -0.32
107 AT3G61850 Dof-type zinc finger DNA-binding family protein dof affecting germination 1 -0.69 0.31 -0.32
108 AT5G22890 C2H2 and C2HC zinc fingers superfamily protein -0.69 0.32 -0.3
109 AT2G30130 Lateral organ boundaries (LOB) domain family protein ASL5, LBD12, PEACOCK 1 -0.68 0.3 -0.3
110 AT4G37295 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stem, root, leaf;
EXPRESSED DURING: LP.06 six leaves visible, LP.04 four
leaves visible; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.68 0.31 -0.33
111 AT3G03520 non-specific phospholipase C3 non-specific phospholipase C3 -0.67 0.32 -0.31