AT4G20030 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G20030
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G20030 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.34 -0.29
2 AT5G12130 integral membrane TerC family protein TELLURITE RESISTANCE C, PIGMENT
DEFECTIVE 149		 0.83 0.3 -0.32
3 AT5G62790 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose 5-phosphate
reductoisomerase,
PIGMENT-DEFECTIVE EMBRYO 129		 0.77 0.32 -0.31
4 AT3G46630 Protein of unknown function (DUF3223) 0.77 0.32 -0.3
5 AT5G48490 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.76 0.3 -0.3
6 AT1G24040 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.75 0.31 -0.32
7 AT4G27390 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.75 0.32 -0.31
8 AT4G33510 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 3-deoxy-d-arabino-heptulosonate
7-phosphate synthase		 0.74 0.3 -0.29
9 AT1G04620 coenzyme F420 hydrogenase family / dehydrogenase, beta
subunit family		 7-hydroxymethyl chlorophyll a
(HMChl) reductase		 0.74 0.29 -0.31
10 AT2G17340 Uncharacterised conserved protein (UCP030210) 0.74 0.32 -0.35
11 AT3G58010 plastoglobulin 34kD plastoglobulin 34kD 0.74 0.31 -0.3
12 AT4G10030 alpha/beta-Hydrolases superfamily protein 0.74 0.34 -0.31
13 AT5G04900 NYC1-like NYC1-like 0.72 0.31 -0.31
14 AT1G29700 Metallo-hydrolase/oxidoreductase superfamily protein 0.71 0.3 -0.31
15 ATCG00580 photosystem II reaction center protein E photosystem II reaction center
protein E		 0.71 0.31 -0.35
16 AT4G10000 Thioredoxin family protein 0.7 0.31 -0.32
17 AT1G28150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 96 Blast hits to 96 proteins
in 44 species: Archae - 0; Bacteria - 56; Metazoa - 0;
Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.7 0.33 -0.34
18 AT3G06483 pyruvate dehydrogenase kinase ATPDHK, pyruvate dehydrogenase
kinase		 0.7 0.3 -0.31
19 AT2G20870 cell wall protein precursor, putative 0.7 0.33 -0.3
20 AT1G71050 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 20		 0.7 0.31 -0.3
21 AT2G37130 Peroxidase superfamily protein -0.69 0.32 -0.29
22 AT3G29810 COBRA-like protein 2 precursor COBRA-like protein 2 precursor -0.69 0.31 -0.33
23 AT4G03520 Thioredoxin superfamily protein ATHM2 0.69 0.33 -0.31
24 AT1G68540 NAD(P)-binding Rossmann-fold superfamily protein cinnamoyl coA reductase-like 6,
tetraketide alpha-pyrone reductase
2		 0.69 0.31 -0.3
25 AT3G20930 RNA-binding (RRM/RBD/RNP motifs) family protein 0.69 0.31 -0.3
26 AT1G77330 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.32 -0.32
27 AT2G30170 Protein phosphatase 2C family protein 0.69 0.29 -0.3
28 AT2G03770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.68 0.32 -0.32
29 AT4G10380 NOD26-like intrinsic protein 5;1 AtNIP5;1, NOD26-like intrinsic
protein 5;1, NOD26-LIKE MIP 6,
NOD26-LIKE MIP 8		 -0.68 0.33 -0.34
30 AT3G05350 Metallopeptidase M24 family protein 0.68 0.32 -0.34
31 AT2G03390 uvrB/uvrC motif-containing protein 0.68 0.3 -0.31
32 AT4G02090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: root; Has 132
Blast hits to 132 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.29 -0.32
33 AT1G67440 Minichromosome maintenance (MCM2/3/5) family protein embryo defective 1688 0.67 0.31 -0.29
34 AT4G12550 Auxin-Induced in Root cultures 1 Auxin-Induced in Root cultures 1 -0.67 0.31 -0.33
35 AT4G32320 ascorbate peroxidase 6 ascorbate peroxidase 6 0.67 0.31 -0.32
36 AT5G53450 OBP3-responsive gene 1 OBP3-responsive gene 1 0.67 0.32 -0.31
37 AT5G24490 30S ribosomal protein, putative 0.67 0.32 -0.32
38 AT3G13860 heat shock protein 60-3A heat shock protein 60-3A -0.66 0.31 -0.31
39 AT3G17910 Surfeit locus 1 cytochrome c oxidase biogenesis protein EMBRYO DEFECTIVE 3121, SURFEIT 1 -0.66 0.32 -0.33
40 AT3G62270 HCO3- transporter family -0.66 0.29 -0.33
41 AT2G41760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function WDYHV (InterPro:IPR019161); Has 201 Blast
hits to 201 proteins in 90 species: Archae - 0; Bacteria -
2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0;
Other Eukaryotes - 27 (source: NCBI BLink).		 0.66 0.29 -0.31
42 AT1G22710 sucrose-proton symporter 2 ARABIDOPSIS THALIANA
SUCROSE-PROTON SYMPORTER 2,
sucrose-proton symporter 2,
SUCROSE TRANSPORTER 1		 0.66 0.32 -0.35
43 AT1G49390 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.32 -0.34
44 AT3G59220 pirin ATPIRIN1, pirin, PRN1 -0.64 0.29 -0.32
45 AT1G80910 Protein of unknown function (DUF1712) -0.64 0.3 -0.31
46 AT3G15590 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.31 -0.31
47 AT4G15230 pleiotropic drug resistance 2 ATP-binding cassette G30, ATPDR2,
pleiotropic drug resistance 2		 -0.64 0.33 -0.32
48 AT3G07770 HEAT SHOCK PROTEIN 89.1 HEAT SHOCK PROTEIN 90-6, HEAT
SHOCK PROTEIN 90.6, HEAT SHOCK
PROTEIN 89.1		 -0.63 0.3 -0.32
49 AT3G20510 Transmembrane proteins 14C -0.63 0.31 -0.32
50 AT2G27610 Tetratricopeptide repeat (TPR)-like superfamily protein -0.63 0.32 -0.31
51 AT5G48100 Laccase/Diphenol oxidase family protein ATLAC15, LACCASE-LIKE 15,
TRANSPARENT TESTA 10		 -0.63 0.3 -0.31
52 AT3G15357 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: shoot apex,
hypocotyl, root, leaf; Has 6931 Blast hits to 2036 proteins
in 230 species: Archae - 7; Bacteria - 933; Metazoa - 1824;
Fungi - 836; Plants - 482; Viruses - 218; Other Eukaryotes
- 2631 (source: NCBI BLink).		 -0.63 0.31 -0.3
53 AT5G66690 UDP-Glycosyltransferase superfamily protein UGT72E2 -0.63 0.32 -0.32
54 AT5G59530 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.63 0.31 -0.3
55 AT3G52710 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast
hits to 64 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.32 -0.31
56 AT2G22850 basic leucine-zipper 6 basic leucine-zipper 6, basic
leucine-zipper 6		 -0.62 0.32 -0.32
57 AT5G01160 RING/U-box superfamily protein -0.62 0.3 -0.31
58 AT1G02810 Plant invertase/pectin methylesterase inhibitor superfamily -0.62 0.33 -0.3
59 AT3G55550 Concanavalin A-like lectin protein kinase family protein -0.62 0.34 -0.32
60 AT5G65800 ACC synthase 5 ACC synthase 5, ATACS5,
CYTOKININ-INSENSITIVE 5, ETHYLENE
OVERPRODUCER 2		 -0.62 0.32 -0.3
61 AT3G59850 Pectin lyase-like superfamily protein -0.61 0.32 -0.32
62 AT5G22790 reticulata-related 1 reticulata-related 1 -0.61 0.33 -0.33
63 AT3G47210 Plant protein of unknown function (DUF247) -0.61 0.31 -0.33
64 AT4G21340 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 B70 -0.61 0.31 -0.29
65 AT5G44610 microtubule-associated protein 18 microtubule-associated protein 18,
PLASMA MEMBRANE ASSOCIATED
CA2+-BINDING PROTEIN-2		 -0.6 0.3 -0.31
66 AT1G68650 Uncharacterized protein family (UPF0016) -0.6 0.31 -0.29
67 AT4G33600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: 4 anthesis, C globular stage, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G33590.1); Has 131 Blast hits to 131 proteins in
40 species: Archae - 0; Bacteria - 9; Metazoa - 12; Fungi -
24; Plants - 58; Viruses - 0; Other Eukaryotes - 28
(source: NCBI BLink).		 -0.59 0.32 -0.31
68 AT1G14390 Leucine-rich repeat protein kinase family protein -0.59 0.31 -0.33
69 AT2G27370 Uncharacterised protein family (UPF0497) Casparian strip membrane domain
protein 3		 -0.59 0.34 -0.3
70 AT3G45410 Concanavalin A-like lectin protein kinase family protein -0.59 0.31 -0.32
71 AT5G61030 glycine-rich RNA-binding protein 3 glycine-rich RNA-binding protein 3 -0.59 0.32 -0.33
72 AT1G67330 Protein of unknown function (DUF579) -0.59 0.31 -0.32
73 AT3G21740 Arabidopsis thaliana protein of unknown function (DUF794) ACCUMULATION OF PHOTOSYSTEM ONE 4 -0.58 0.3 -0.34
74 AT4G20460 NAD(P)-binding Rossmann-fold superfamily protein -0.58 0.33 -0.31
75 AT2G27000 cytochrome P450, family 705, subfamily A, polypeptide 8 cytochrome P450, family 705,
subfamily A, polypeptide 8		 -0.57 0.3 -0.31
76 AT3G10660 calmodulin-domain protein kinase cdpk isoform 2 ATCPK2, calmodulin-domain protein
kinase cdpk isoform 2		 -0.57 0.33 -0.33
77 AT1G15170 MATE efflux family protein -0.57 0.29 -0.31
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
78 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		0.74 0.45 -0.43 C0011
79 C0079 Digalactosyldiacylglycerol-34:5 - Digalactosyldiacylglycerol-34:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.72 0.44 -0.43 C0079
80 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.69 0.43 -0.44 C0234
81 C0094 Galactosamine D-Galactosamine - - 0.67 0.43 -0.45