AT4G20160 : -
Query Information
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AGICode AT4G20160
Description LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G20160 LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has
64917 Blast hits to 39974 proteins in 1949 species: Archae
- 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788;
Plants - 3193; Viruses - 275; Other Eukaryotes - 21353
(source: NCBI BLink).		 1 0.32 -0.32
2 AT3G53910 malate dehydrogenase-related -0.55 0.3 -0.29
3 AT3G47680 DNA binding -0.55 0.33 -0.33
4 AT1G69240 methyl esterase 15 ARABIDOPSIS THALIANA METHYL
ESTERASE 15, methyl esterase 15,
ROOT HAIR SPECIFIC 9		 0.54 0.33 -0.31
5 AT2G30480 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 -0.53 0.32 -0.3
6 AT4G30200 vernalization5/VIN3-like vernalization5/VIN3-like 1,
VIN3-Like 2		 0.53 0.29 -0.31
7 AT4G18490 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.52 0.33 -0.31
8 AT4G13560 Late embryogenesis abundant protein (LEA) family protein unfertilized embryo sac 15 -0.52 0.31 -0.33
9 AT3G02310 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 4, SEPALLATA 2 0.51 0.31 -0.3
10 AT3G52260 Pseudouridine synthase family protein 0.5 0.31 -0.32
11 AT1G80880 Tetratricopeptide repeat (TPR)-like superfamily protein 0.5 0.3 -0.32
12 AT4G08890 transposable element gene -0.49 0.3 -0.33
13 AT1G67210 Proline-rich spliceosome-associated (PSP) family protein /
zinc knuckle (CCHC-type) family protein		 -0.49 0.32 -0.34
14 AT3G25720 RNA-directed DNA polymerase (reverse transcriptase)-related
family protein		 -0.49 0.32 -0.29
15 AT5G04560 HhH-GPD base excision DNA repair family protein DEMETER 0.48 0.32 -0.33
16 AT1G21780 BTB/POZ domain-containing protein -0.48 0.32 -0.32
17 AT3G28520 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.48 0.33 -0.3
18 AT3G04750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.47 0.3 -0.28
19 AT2G44250 Protein of Unknown Function (DUF239) 0.47 0.32 -0.32
20 AT3G44820 Phototropic-responsive NPH3 family protein -0.47 0.32 -0.31
21 AT5G22430 Pollen Ole e 1 allergen and extensin family protein 0.47 0.31 -0.3
22 AT5G65080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 68, MADS AFFECTING
FLOWERING 5		 0.46 0.31 -0.36
23 AT4G05260 Ubiquitin-like superfamily protein 0.46 0.31 -0.32
24 AT4G15150 glycine-rich protein -0.46 0.32 -0.32
25 AT4G38230 calcium-dependent protein kinase 26 ARABIDOPSIS THALIANA
CALCIUM-DEPENDENT PROTEIN KINASE
26, calcium-dependent protein
kinase 26		 -0.46 0.33 -0.32
26 AT4G26560 calcineurin B-like protein 7 calcineurin B-like protein 7 -0.46 0.32 -0.3
27 AT2G04860 Tetratricopeptide repeat (TPR)-like superfamily protein -0.46 0.31 -0.32
28 AT5G13310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED
DURING: 7 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G13970.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.45 0.31 -0.33
29 AT3G49080 Ribosomal protein S5 domain 2-like superfamily protein 0.45 0.31 -0.3
30 AT2G13970 transposable element gene -0.45 0.33 -0.3
31 AT2G18920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: synergid; Has 1 Blast hits to 1
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.45 0.34 -0.3
32 AT1G41750 transposable element gene -0.44 0.32 -0.3
33 AT4G01910 Cysteine/Histidine-rich C1 domain family protein 0.44 0.31 -0.31
34 AT4G08530 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.43 0.34 -0.32
35 AT4G10070 KH domain-containing protein 0.43 0.31 -0.32
36 AT1G23650 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.43 0.29 -0.3
37 AT3G58230 Ubiquitin-specific protease family C19-related protein 0.42 0.32 -0.31
38 AT3G25810 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.42 0.31 -0.34
39 AT5G48210 Protein of unknown function (DUF1278) -0.41 0.31 -0.31
40 AT4G15650 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: male gametophyte,
flower, pollen tube; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage, 4 anthesis; Has 5184
Blast hits to 3451 proteins in 562 species: Archae - 30;
Bacteria - 838; Metazoa - 1576; Fungi - 798; Plants - 319;
Viruses - 111; Other Eukaryotes - 1512 (source: NCBI
BLink).		 -0.41 0.3 -0.34
41 AT2G27900 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein
sorting-associated protein 54 (InterPro:IPR019515); Has 316
Blast hits to 252 proteins in 92 species: Archae - 0;
Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 -0.4 0.31 -0.33