AT4G19670 : -
Query Information
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AGICode AT4G19670
Description RING/U-box superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G19670 RING/U-box superfamily protein 1 0.3 -0.29
2 AT5G15010 Tetratricopeptide repeat (TPR)-like superfamily protein -0.73 0.33 -0.31
3 AT5G49500 Signal recognition particle, SRP54 subunit protein 0.73 0.32 -0.32
4 AT4G15755 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.68 0.3 -0.33
5 AT1G74870 RING/U-box superfamily protein -0.67 0.32 -0.33
6 AT2G30710 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.67 0.31 -0.29
7 AT5G44280 RING 1A ARABIDOPSIS THALIANA RING 1A, RING
1A		 -0.66 0.32 -0.31
8 AT2G15510 transposable element gene -0.66 0.31 -0.32
9 AT1G07380 Neutral/alkaline non-lysosomal ceramidase 0.66 0.33 -0.31
10 AT3G03970 ARM repeat superfamily protein -0.64 0.31 -0.32
11 AT3G25210 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.33 -0.31
12 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 -0.64 0.32 -0.31
13 AT1G54310 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.64 0.3 -0.31
14 AT1G15790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits
to 94 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.32 -0.31
15 AT2G30800 helicase in vascular tissue and tapetum ATVT-1, helicase in vascular
tissue and tapetum		 -0.63 0.3 -0.31
16 AT4G33710 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.63 0.31 -0.31
17 AT4G08790 Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein		 0.63 0.31 -0.32
18 AT4G25940 ENTH/ANTH/VHS superfamily protein 0.63 0.3 -0.32
19 AT4G35220 Cyclase family protein 0.63 0.32 -0.32
20 AT1G72390 CONTAINS InterPro DOMAIN/s: Spt20 family
(InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins
in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198;
Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes
- 1797 (source: NCBI BLink).		 -0.63 0.31 -0.29
21 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 -0.63 0.34 -0.34
22 AT2G39090 tetratricopeptide repeat (TPR)-containing protein anaphase-promoting complex 7,
AtAPC7		 0.63 0.33 -0.3
23 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein 0.63 0.31 -0.31
24 AT2G07520 transposable element gene -0.63 0.32 -0.29
25 AT5G53030 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF688 (InterPro:IPR007789); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.62 0.31 -0.3
26 AT2G15930 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.62 0.29 -0.32
27 AT1G20920 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.62 0.3 -0.34
28 AT1G59580 mitogen-activated protein kinase homolog 2 mitogen-activated protein kinase
homolog 2, mitogen-activated
protein kinase homolog 2		 0.62 0.33 -0.27
29 AT1G12790 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like
(InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.31 -0.33
30 AT3G17280 F-box and associated interaction domains-containing protein 0.61 0.31 -0.29
31 AT3G03580 Tetratricopeptide repeat (TPR)-like superfamily protein -0.61 0.34 -0.3
32 AT3G31360 transposable element gene 0.61 0.31 -0.32
33 AT1G64820 MATE efflux family protein -0.61 0.32 -0.32
34 AT1G64960 ARM repeat superfamily protein hypersensitive to excess boron 1 -0.61 0.31 -0.31
35 AT5G09280 Pectin lyase-like superfamily protein 0.6 0.29 -0.31
36 AT2G42390 protein kinase C substrate, heavy chain-related 0.6 0.29 -0.32
37 AT2G18930 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.33 -0.32
38 AT1G11900 Tetratricopeptide repeat (TPR)-like superfamily protein -0.6 0.3 -0.31
39 AT1G43840 transposable element gene -0.6 0.33 -0.29
40 AT4G20420 Tapetum specific protein TAP35/TAP44 0.6 0.3 -0.32
41 AT5G11530 embryonic flower 1 (EMF1) embryonic flower 1 -0.59 0.32 -0.32
42 AT1G63900 E3 Ubiquitin ligase family protein DIAP1-like protein 1 -0.59 0.3 -0.33
43 AT3G09320 DHHC-type zinc finger family protein -0.59 0.32 -0.32
44 AT5G24440 CTC-interacting domain 13 CTC-interacting domain 13 0.59 0.33 -0.32
45 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain -0.59 0.33 -0.32
46 AT2G35030 Pentatricopeptide repeat (PPR) superfamily protein -0.59 0.32 -0.33
47 AT3G23820 UDP-D-glucuronate 4-epimerase 6 UDP-D-glucuronate 4-epimerase 6 -0.59 0.31 -0.31
48 AT4G31140 O-Glycosyl hydrolases family 17 protein -0.58 0.32 -0.33
49 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 -0.58 0.32 -0.31
50 AT4G20250 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.58 0.32 -0.31
51 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family 0.58 0.31 -0.32
52 AT5G09320 Vacuolar sorting protein 9 (VPS9) domain VPS9B -0.58 0.31 -0.31
53 AT1G20300 Pentatricopeptide repeat (PPR) superfamily protein -0.58 0.29 -0.3
54 AT3G16550 DEGP protease 12 DEGP protease 12 -0.57 0.32 -0.33
55 AT3G06650 ATP-citrate lyase B-1 ATP-citrate lyase B-1 -0.57 0.29 -0.32
56 AT5G27160 transposable element gene -0.57 0.32 -0.31
57 AT2G28180 Cation/hydrogen exchanger family protein ATCHX8, CHX08, CATION/H+ EXCHANGER
8		 -0.57 0.33 -0.32
58 AT3G21380 Mannose-binding lectin superfamily protein -0.57 0.31 -0.32
59 AT2G39120 Ubiquitin carboxyl-terminal hydrolase family protein what's this factor 9 -0.57 0.33 -0.3
60 AT5G02650 BEST Arabidopsis thaliana protein match is: Telomerase
activating protein Est1 (TAIR:AT1G28260.2); Has 20 Blast
hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.31 -0.32
61 AT2G26410 IQ-domain 4 IQ-domain 4 -0.57 0.33 -0.31
62 AT1G65220 ARM repeat superfamily protein -0.57 0.32 -0.31
63 AT5G09490 Ribosomal protein S19 family protein -0.57 0.31 -0.31
64 AT3G61580 Fatty acid/sphingolipid desaturase AtSLD1, sphingoid LCB desaturase 1 -0.57 0.3 -0.31
65 AT5G62320 myb domain protein 99 myb domain protein 99, ATMYBCU15,
myb domain protein 99		 -0.56 0.31 -0.31
66 AT1G29110 Cysteine proteinases superfamily protein -0.56 0.3 -0.31
67 AT3G50670 U1 small nuclear ribonucleoprotein-70K U1 small nuclear
ribonucleoprotein-70K, U1SNRNP		 -0.56 0.32 -0.31
68 AT5G56610 Phosphotyrosine protein phosphatases superfamily protein 0.56 0.29 -0.31
69 AT3G11760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.32 -0.3
70 AT3G02980 MEIOTIC CONTROL OF CROSSOVERS1 MEIOTIC CONTROL OF CROSSOVERS1 0.56 0.32 -0.32
71 AT1G53710 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.56 0.31 -0.3
72 AT2G42520 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.56 0.33 -0.32
73 AT3G07610 Transcription factor jumonji (jmjC) domain-containing
protein		 increase in bonsai methylation 1 -0.56 0.32 -0.33
74 AT5G49310 importin alpha isoform 5 importin alpha isoform 5 -0.56 0.33 -0.32
75 AT3G49920 voltage dependent anion channel 5 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 5, voltage
dependent anion channel 5		 0.56 0.3 -0.32
76 AT5G38580 FBD-like domain family protein 0.55 0.3 -0.31
77 AT3G16960 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; CONTAINS InterPro DOMAIN/s: Plant
self-incompatibility S1 (InterPro:IPR010264); BEST
Arabidopsis thaliana protein match is: Plant
self-incompatibility protein S1 family (TAIR:AT3G16970.1);
Has 22 Blast hits to 22 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.3 -0.31
78 AT2G27350 OTU-like cysteine protease family protein otubain-like deubiquitinase 1 0.55 0.31 -0.32
79 AT1G78000 sulfate transporter 1;2 SELENATE RESISTANT 1, sulfate
transporter 1;2		 0.55 0.31 -0.34
80 AT5G38750 asparaginyl-tRNA synthetase family -0.55 0.29 -0.33
81 AT5G28470 Major facilitator superfamily protein 0.55 0.33 -0.33
82 AT2G05820 transposable element gene 0.55 0.32 -0.32
83 AT3G02400 SMAD/FHA domain-containing protein -0.55 0.31 -0.32
84 AT2G29900 Presenilin-2 Presenilin-2 -0.55 0.3 -0.31
85 AT3G57890 Tubulin binding cofactor C domain-containing protein -0.55 0.3 -0.32
86 AT4G16050 Aminotransferase-like, plant mobile domain family protein -0.55 0.3 -0.32
87 AT1G74700 tRNAse Z1 NUZ, tRNAse Z1 -0.55 0.33 -0.31
88 AT4G32410 cellulose synthase 1 CELLULOSE SYNTHASE 1, cellulose
synthase 1, RADIALLY SWOLLEN 1		 -0.54 0.33 -0.32
89 AT5G28290 NIMA-related kinase 3 NIMA-related kinase 3,
NIMA-related kinase 3		 -0.54 0.31 -0.28
90 AT4G22940 Protein kinase superfamily protein 0.54 0.31 -0.35
91 AT2G03840 tetraspanin13 tetraspanin13 -0.54 0.32 -0.32
92 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.54 0.32 -0.3
93 AT2G05580 Glycine-rich protein family 0.54 0.29 -0.32
94 AT4G18520 Pentatricopeptide repeat (PPR) superfamily protein -0.54 0.29 -0.32
95 AT2G30280 RNA-directed DNA methylation 4 DEFECTIVE IN MERISTEM SILENCING 4,
RNA-directed DNA methylation 4		 0.54 0.3 -0.3
96 AT2G18470 roline-rich extensin-like receptor kinase 4 proline-rich extensin-like
receptor kinase 4, proline-rich
extensin-like receptor kinase 4		 0.54 0.28 -0.32
97 AT1G01460 Phosphatidylinositol-4-phosphate 5-kinase, core ATPIPK11, PIPK11 -0.54 0.33 -0.32
98 AT2G29080 FTSH protease 3 FTSH protease 3 -0.53 0.33 -0.31
99 AT1G78930 Mitochondrial transcription termination factor family
protein		 -0.53 0.31 -0.32
100 AT3G16830 TOPLESS-related 2 TOPLESS-related 2 -0.53 0.32 -0.31
101 AT4G38120 ARM repeat superfamily protein -0.53 0.32 -0.32
102 AT1G49850 RING/U-box superfamily protein -0.53 0.32 -0.3
103 AT1G15920 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.53 0.32 -0.36
104 AT2G06950 transposable element gene -0.53 0.31 -0.29
105 AT3G32917 transposable element gene 0.53 0.3 -0.31
106 AT5G43670 Sec23/Sec24 protein transport family protein -0.53 0.29 -0.31
107 AT4G00780 TRAF-like family protein 0.53 0.33 -0.31
108 AT1G35530 DEAD/DEAH box RNA helicase family protein -0.53 0.33 -0.3
109 AT2G42090 actin 9 actin 9 -0.53 0.31 -0.33
110 AT2G42940 Predicted AT-hook DNA-binding family protein -0.53 0.33 -0.3
111 AT3G17900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 45
Blast hits to 44 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.53 0.32 -0.32
112 AT4G21490 NAD(P)H dehydrogenase B3 NAD(P)H dehydrogenase B3 -0.53 0.32 -0.29
113 AT3G30220 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43150.1); Has 30 Blast hits
to 30 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.52 0.31 -0.3
114 AT2G42040 CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has
219 Blast hits to 219 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.52 0.3 -0.33
115 AT4G14610 pseudogene, disease resistance protein (CC-NBS-LRR class),
putative, domain signature CC-NBS-LRR exists, suggestive of
a disease resistance protein.; blastp match of 45% identity
and 2.2e-162 P-value to
GP|24461866|gb|AAN62353.1|AF506028_20|AF506028 NBS-LRR type
disease resistance protein {Poncirus trifoliata}		 0.52 0.31 -0.33
116 AT4G39370 ubiquitin-specific protease 27 ubiquitin-specific protease 27 0.52 0.32 -0.33
117 AT1G68040 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.52 0.31 -0.3
118 AT2G40990 DHHC-type zinc finger family protein 0.51 0.31 -0.33
119 AT4G04230 transposable element gene 0.5 0.31 -0.32
120 AT4G31680 Transcriptional factor B3 family protein 0.5 0.3 -0.31
121 AT5G18840 Major facilitator superfamily protein 0.5 0.3 -0.32
122 AT4G05250 Ubiquitin-like superfamily protein 0.5 0.3 -0.33
123 AT2G29250 Concanavalin A-like lectin protein kinase family protein 0.5 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
124 C0173 MST_2301.7 - - - -0.71 0.43 -0.45
125 C0247 Sulfoquinovosyldiacylglycerol-34:3 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis -0.7 0.51 -0.47 C0247
126 C0251 Sulfoquinovosyldiacylglycerol-36:6 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis -0.7 0.53 -0.51 C0251
127 C0031 3-Methylthio-n-propylglucosinolate - 3-Methylthiopropylglucosinolate glucosinolate biosynthesis from homomethionine -0.69 0.41 -0.43 C0031
128 C0082 Digalactosyldiacylglycerol-36:3 - Digalactosyldiacylglycerol-36:3 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.68 0.5 -0.5 C0082
129 C0086 Disinapylspermidine - - - -0.67 0.42 -0.46
130 C0012 n-Eicosanoic acid - Arachidate fatty acid activation,
fatty acid ω-oxidation,
sporopollenin precursor biosynthesis,
acyl-ACP thioesterase pathway,
ceramide degradation,
fatty acid α-oxidation,
fatty acid ω-oxidation,
phospholipases,
triacylglycerol degradation 		-0.64 0.44 -0.43 C0012
131 C0126 Isorhamnetin-dirhamnoside - - - -0.63 0.45 -0.44
132 C0213 PR_MST_2410.2 - - - -0.63 0.44 -0.43
133 C0206 Phosphatidylglycerol-34:4 - Phosphatidylglycerol-34:4 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		-0.62 0.33 -0.34
134 C0201 Phosphatidylglycerol-32:1 - Phosphatidylglycerol-32:1 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		-0.61 0.34 -0.31
135 C0078 Digalactosyldiacylglycerol-34:3 - Digalactosyldiacylglycerol-34:3 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.6 0.34 -0.34
136 C0077 Digalactosyldiacylglycerol-34:2 - Digalactosyldiacylglycerol-34:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.56 0.34 -0.34
137 C0205 Phosphatidylglycerol-34:3 - Phosphatidylglycerol-34:3 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		-0.56 0.34 -0.35
138 C0246 Sulfoquinovosyldiacylglycerol-34:2 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis -0.53 0.31 -0.35 C0246