AT4G19350 : embryo defective 3006
Query Information
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AGICode AT4G19350
Description embryo defective 3006
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G19350 embryo defective 3006 embryo defective 3006 1 0.29 -0.32
2 AT5G25540 CTC-interacting domain 6 CTC-interacting domain 6 -0.71 0.31 -0.32
3 AT1G26830 cullin 3 cullin 3, cullin 3A, cullin 3,
cullin 3A		 -0.7 0.32 -0.34
4 AT5G40280 Prenyltransferase family protein ARABIDOPSIS THALIANA FARNESYL
TRANSFERASE BETA SUBUNIT, ENHANCED
RESPONSE TO ABA 1, WIGGUM		 -0.69 0.31 -0.31
5 AT3G21060 Transducin/WD40 repeat-like superfamily protein RbBP5 LIKE 0.67 0.31 -0.29
6 AT5G40560 DegP protease 13 DegP protease 13 -0.66 0.33 -0.32
7 AT5G51740 Peptidase family M48 family protein -0.65 0.3 -0.31
8 AT3G58330 Arabidopsis phospholipase-like protein (PEARLI 4) family 0.65 0.32 -0.32
9 AT2G30930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plasma membrane, membrane; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G06540.1); Has 194 Blast hits to 176 proteins in
78 species: Archae - 0; Bacteria - 101; Metazoa - 15; Fungi
- 25; Plants - 12; Viruses - 4; Other Eukaryotes - 37
(source: NCBI BLink).		 -0.64 0.31 -0.33
10 AT4G28760 Protein of unknown function (DUF3741) 0.64 0.33 -0.31
11 AT1G17090 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast
hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.31 -0.31
12 AT2G10920 unknown protein; Has 5 Blast hits to 5 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.64 0.3 -0.3
13 AT3G56760 Protein kinase superfamily protein 0.64 0.31 -0.33
14 AT5G22680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
F-box/RNI-like superfamily protein (TAIR:AT5G22720.2); Has
65 Blast hits to 64 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.31 -0.31
15 AT1G63960 Copper transport protein family 0.63 0.31 -0.33
16 AT4G15730 CW-type Zinc Finger 0.63 0.33 -0.31
17 AT2G35390 Phosphoribosyltransferase family protein 0.63 0.33 -0.32
18 AT2G44900 ARABIDILLO-1 ARABIDILLO-1, F-box Armadillo
protein 1		 0.62 0.34 -0.29
19 AT4G10950 SGNH hydrolase-type esterase superfamily protein 0.62 0.31 -0.32
20 AT3G27270 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 0.62 0.33 -0.32
21 AT3G57790 Pectin lyase-like superfamily protein -0.62 0.34 -0.3
22 AT5G53070 Ribosomal protein L9/RNase H1 0.62 0.31 -0.3
23 AT2G22320 unknown protein; Has 7 Blast hits to 7 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.62 0.32 -0.33
24 AT5G61650 CYCLIN P4;2 CYCP4, CYCLIN P4;2 -0.62 0.32 -0.31
25 AT2G01410 NHL domain-containing protein -0.61 0.3 -0.32
26 AT2G01310 BEST Arabidopsis thaliana protein match is:
cyclin-dependent protein kinase 3;2 (TAIR:AT1G47210.1); Has
37 Blast hits to 37 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.32 -0.32
27 AT1G11270 F-box and associated interaction domains-containing protein -0.61 0.34 -0.33
28 AT1G43010 Pentatricopeptide repeat (PPR) superfamily protein 0.61 0.33 -0.33
29 AT5G46730 glycine-rich protein -0.61 0.33 -0.34
30 AT1G32050 SCAMP family protein 0.6 0.3 -0.33
31 AT3G24540 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 3, proline-rich
extensin-like receptor kinase 3		 0.6 0.29 -0.33
32 AT2G29970 Double Clp-N motif-containing P-loop nucleoside
triphosphate hydrolases superfamily protein		 0.6 0.33 -0.3
33 AT2G04820 transposable element gene 0.6 0.3 -0.33
34 AT2G47850 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.6 0.31 -0.3
35 AT4G05170 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.6 0.31 -0.29
36 AT2G10460 transposable element gene -0.59 0.32 -0.31
37 AT3G50730 Protein kinase superfamily protein 0.59 0.31 -0.33
38 AT3G22040 Domain of unknown function (DUF26) -0.59 0.29 -0.33
39 AT2G18720 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 -0.59 0.31 -0.31
40 AT4G23320 cysteine-rich RLK (RECEPTOR-like protein kinase) 24 cysteine-rich RLK (RECEPTOR-like
protein kinase) 24		 -0.59 0.33 -0.31
41 AT4G11970 YTH family protein 0.59 0.31 -0.33
42 AT2G40050 Cysteine/Histidine-rich C1 domain family protein -0.59 0.29 -0.33
43 AT3G28630 Protein of unknown function (DUF569) 0.59 0.32 -0.3
44 AT3G55480 protein affected trafficking 2 beta-subunit of adaptor protein
complex 3, protein affected
trafficking 2		 0.59 0.31 -0.31
45 AT1G06260 Cysteine proteinases superfamily protein 0.58 0.32 -0.32
46 AT4G28420 Tyrosine transaminase family protein 0.58 0.3 -0.33
47 AT5G52260 myb domain protein 19 myb domain protein 19, myb domain
protein 19		 0.58 0.31 -0.3
48 AT4G38760 Protein of unknown function (DUF3414) 0.58 0.31 -0.29
49 AT5G63620 GroES-like zinc-binding alcohol dehydrogenase family
protein		 -0.58 0.32 -0.31
50 AT1G51990 O-methyltransferase family protein 0.58 0.35 -0.3
51 AT1G67580 Protein kinase superfamily protein 0.58 0.32 -0.32
52 AT5G28930 transposable element gene 0.57 0.33 -0.33
53 AT4G30340 diacylglycerol kinase 7 diacylglycerol kinase 7,
diacylglycerol kinase 7		 -0.57 0.31 -0.33
54 AT1G56380 Mitochondrial transcription termination factor family
protein		 0.57 0.3 -0.31
55 AT5G17370 Transducin/WD40 repeat-like superfamily protein 0.57 0.31 -0.32
56 AT2G23740 nucleic acid binding;sequence-specific DNA binding
transcription factors;zinc ion binding		 0.57 0.32 -0.3
57 AT1G74550 cytochrome P450, family 98, subfamily A, polypeptide 9 cytochrome P450, family 98,
subfamily A, polypeptide 9		 0.57 0.31 -0.32
58 AT4G20370 PEBP (phosphatidylethanolamine-binding protein) family
protein		 TWIN SISTER OF FT 0.56 0.31 -0.32
59 AT1G31450 Eukaryotic aspartyl protease family protein 0.56 0.3 -0.3
60 AT5G48350 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.56 0.33 -0.33
61 AT2G16810 F-box and associated interaction domains-containing protein 0.56 0.31 -0.31
62 AT1G54320 LEM3 (ligand-effect modulator 3) family protein / CDC50
family protein		 -0.55 0.31 -0.32
63 AT3G42730 transposable element gene -0.55 0.33 -0.32
64 AT2G26620 Pectin lyase-like superfamily protein -0.55 0.32 -0.3
65 AT5G42440 Protein kinase superfamily protein -0.55 0.32 -0.32
66 AT5G04200 metacaspase 9 metacaspase 9, metacaspase 2f,
metacaspase 9, metacaspase 2f		 -0.55 0.3 -0.3
67 AT1G51160 SNARE-like superfamily protein -0.54 0.33 -0.32
68 AT3G05460 sporozoite surface protein-related -0.54 0.31 -0.34
69 AT5G46010 Homeodomain-like superfamily protein -0.54 0.34 -0.32
70 AT5G45360 F-box family protein -0.53 0.3 -0.3
71 AT4G05300 transposable element gene -0.53 0.3 -0.3
72 AT5G42490 ATP binding microtubule motor family protein -0.53 0.32 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
73 C0180 MST_2539.9 - - - 0.68 0.48 -0.43
74 C0101 Glutamic acid D,L-Glutamic acid L-Glutamate; D-Glutamate tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate) 		0.58 0.31 -0.33 C0101