AT4G18375 : -
Query Information
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AGICode AT4G18375
Description RNA-binding KH domain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G18375 RNA-binding KH domain-containing protein 1 0.32 -0.31
2 AT5G05140 Transcription elongation factor (TFIIS) family protein -0.82 0.32 -0.32
3 AT1G21450 SCARECROW-like 1 SCARECROW-like 1 -0.78 0.33 -0.32
4 AT1G72790 hydroxyproline-rich glycoprotein family protein -0.78 0.31 -0.31
5 AT1G34370 C2H2 and C2HC zinc fingers superfamily protein sensitive to proton rhizotoxicity
1		 -0.78 0.32 -0.3
6 AT4G29750 CRS1 / YhbY (CRM) domain-containing protein 0.77 0.33 -0.3
7 AT3G10800 Basic-leucine zipper (bZIP) transcription factor family
protein		 BZIP28 -0.77 0.28 -0.31
8 AT5G07690 myb domain protein 29 myb domain protein 29, myb domain
protein 29, PRODUCTION OF
METHIONINE-DERIVED GLUCOSINOLATE 2		 0.76 0.31 -0.29
9 AT5G17650 glycine/proline-rich protein -0.75 0.31 -0.31
10 AT1G69440 Argonaute family protein ARGONAUTE7, ZIPPY 0.75 0.32 -0.34
11 AT5G16830 syntaxin of plants 21 ATPEP12, ATSYP21, PEP12, PEP12P,
syntaxin of plants 21		 -0.74 0.32 -0.33
12 AT1G11480 eukaryotic translation initiation factor-related -0.74 0.28 -0.32
13 AT5G11470 bromo-adjacent homology (BAH) domain-containing protein 0.74 0.3 -0.31
14 AT5G02830 Tetratricopeptide repeat (TPR)-like superfamily protein 0.74 0.34 -0.32
15 AT4G28100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
anchored to plasma membrane, anchored to membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.74 0.33 -0.31
16 AT5G17490 RGA-like protein 3 AtRGL3, RGA-like protein 3 -0.74 0.31 -0.32
17 AT3G28850 Glutaredoxin family protein -0.74 0.33 -0.31
18 AT1G15670 Galactose oxidase/kelch repeat superfamily protein -0.74 0.31 -0.31
19 AT3G16740 F-box and associated interaction domains-containing protein -0.73 0.34 -0.34
20 AT3G02140 AFP2 (ABI five-binding protein 2) family protein ABI FIVE BINDING PROTEIN 4, TWO OR
MORE ABRES-CONTAINING GENE 2		 -0.73 0.31 -0.3
21 AT3G19910 RING/U-box superfamily protein -0.73 0.3 -0.33
22 AT5G14180 Myzus persicae-induced lipase 1 Myzus persicae-induced lipase 1 -0.73 0.32 -0.3
23 AT2G40800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G56430.1); Has 43 Blast hits
to 43 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.73 0.33 -0.32
24 AT3G26050 TPX2 (targeting protein for Xklp2) protein family 0.72 0.32 -0.31
25 AT3G13430 RING/U-box superfamily protein -0.72 0.33 -0.31
26 AT1G76630 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.29 -0.32
27 AT4G21810 DERLIN-2.1 DERLIN-2.1 -0.72 0.32 -0.3
28 AT1G29340 plant U-box 17 ARABIDOPSIS THALIANA PLANT U-BOX
17, plant U-box 17		 -0.72 0.32 -0.34
29 AT1G67690 Zincin-like metalloproteases family protein 0.72 0.34 -0.3
30 AT5G04620 biotin F biotin F, biotin 4, biotin F 0.71 0.3 -0.3
31 AT4G39090 Papain family cysteine protease RESPONSIVE TO DEHYDRATION 19,
RESPONSIVE TO DEHYDRATION 19A		 -0.71 0.34 -0.31
32 AT5G32440 Ubiquitin system component Cue protein -0.71 0.3 -0.31
33 AT5G27620 cyclin H;1 cyclin H;1 0.71 0.31 -0.32
34 AT3G55660 ROP (rho of plants) guanine nucleotide exchange factor 6 ATROPGEF6, ROP (rho of plants)
guanine nucleotide exchange factor
6		 0.7 0.3 -0.31
35 AT2G28120 Major facilitator superfamily protein -0.7 0.33 -0.32
36 AT1G78310 VQ motif-containing protein -0.7 0.32 -0.31
37 AT1G35140 Phosphate-responsive 1 family protein EXORDIUM like 1, PHOSPHATE-INDUCED
1		 -0.7 0.33 -0.31
38 AT5G63010 Transducin/WD40 repeat-like superfamily protein -0.7 0.29 -0.32
39 AT3G48530 SNF1-related protein kinase regulatory subunit gamma 1 SNF1-related protein kinase
regulatory subunit gamma 1		 -0.69 0.32 -0.32
40 AT1G23780 F-box family protein -0.69 0.33 -0.3
41 AT1G53300 tetratricopetide-repeat thioredoxin-like 1 tetratricopetide-repeat
thioredoxin-like 1		 0.69 0.32 -0.33
42 AT2G26050 Protein of unknown function (DUF1644) 0.69 0.33 -0.31
43 AT5G39940 FAD/NAD(P)-binding oxidoreductase family protein 0.69 0.31 -0.29
44 AT4G24110 unknown protein; Has 76 Blast hits to 76 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0;
Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.32 -0.32
45 AT1G25280 tubby like protein 10 tubby like protein 10, tubby like
protein 10		 -0.69 0.32 -0.31
46 AT2G43060 ILI1 binding bHLH 1 ILI1 binding bHLH 1 -0.69 0.29 -0.3
47 AT5G03460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.69 0.3 -0.3
48 AT5G17640 Protein of unknown function (DUF1005) -0.68 0.3 -0.32
49 AT2G28310 Protein of unknown function (DUF707) 0.68 0.33 -0.32
50 AT5G50230 Transducin/WD40 repeat-like superfamily protein -0.68 0.34 -0.31
51 AT5G28500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in
49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi -
0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.68 0.31 -0.3
52 AT5G14610 DEAD box RNA helicase family protein 0.68 0.33 -0.33
53 AT1G79590 syntaxin of plants 52 ATSYP52, syntaxin of plants 52 -0.68 0.33 -0.3
54 AT5G50820 NAC domain containing protein 97 NAC domain containing protein 97,
NAC domain containing protein 97		 0.68 0.34 -0.31
55 AT1G02816 Protein of unknown function, DUF538 -0.67 0.31 -0.33
56 AT3G20340 Expression of the gene is downregulated in the presence of
paraquat, an inducer of photoxidative stress.		 -0.67 0.29 -0.31
57 AT1G62085 Mitochondrial transcription termination factor family
protein		 0.67 0.3 -0.32
58 AT4G21980 Ubiquitin-like superfamily protein AUTOPHAGY 8A, AUTOPHAGY-RELATED 8A -0.67 0.31 -0.35
59 AT4G24970 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 0.67 0.31 -0.31
60 AT4G09970 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 18
plant structures; EXPRESSED DURING: 13 growth stages; Has
15 Blast hits to 15 proteins in 6 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.33 -0.3
61 AT3G01400 ARM repeat superfamily protein -0.67 0.32 -0.31
62 AT5G42010 Transducin/WD40 repeat-like superfamily protein -0.67 0.32 -0.33
63 AT1G35670 calcium-dependent protein kinase 2 calcium-dependent protein kinase
2, ATCPK11, calcium-dependent
protein kinase 2, CPK11		 -0.67 0.31 -0.3
64 AT3G27560 Protein kinase superfamily protein ATN1 -0.67 0.31 -0.31
65 AT1G35750 pumilio 10 pumilio 10, pumilio 10 0.67 0.31 -0.34
66 AT2G16710 Iron-sulphur cluster biosynthesis family protein -0.67 0.32 -0.34
67 AT3G04560 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 16 growth stages; Has
227 Blast hits to 225 proteins in 83 species: Archae - 0;
Bacteria - 17; Metazoa - 98; Fungi - 29; Plants - 51;
Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink).		 -0.67 0.33 -0.33
68 AT4G13990 Exostosin family protein 0.67 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
69 C0016 S-Adenosylmethionine S-Adenosyl-L-methionine S-Adenosyl-L-methionine ethylene biosynthesis I (plants),
scopoletin biosynthesis,
quercetinsulphates biosynthesis,
siroheme biosynthesis,
gibberellin inactivation II (methylation),
suberin biosynthesis,
volatile benzenoid biosynthesis I (ester formation),
S-adenosyl-L-methionine cycle II,
methylhalides biosynthesis (plants),
S-methylmethionine cycle,
ubiquinol-9 biosynthesis (eukaryotic),
nicotianamine biosynthesis,
methionine biosynthesis II,
spermine biosynthesis,
choline biosynthesis II,
diphthamide biosynthesis,
homogalacturonan biosynthesis,
phosphatidylcholine biosynthesis II,
methylquercetin biosynthesis,
plastoquinol biosynthesis,
chlorophyllide a biosynthesis I,
ferulate and sinapate biosynthesis,
ubiquinol-10 biosynthesis (eukaryotic),
phenylpropanoid biosynthesis,
free phenylpropanoid acid biosynthesis,
seleno-amino acid detoxification and volatilization I,
plant sterol biosynthesis,
lipoate biosynthesis and incorporation I,
methyl indole-3-acetate interconversion,
cyclopropane and cyclopropene fatty acid biosynthesis,
spermidine biosynthesis I,
thiamine biosynthesis II,
methionine salvage pathway,
spermidine hydroxycinnamic acid conjugates biosynthesis,
simple coumarins biosynthesis,
phosphatidylcholine biosynthesis IV,
glutathione-mediated detoxification II,
S-adenosyl-L-methionine biosynthesis,
methionine degradation I (to homocysteine),
phosphatidylcholine biosynthesis III,
phylloquinol biosynthesis,
choline biosynthesis I,
biotin biosynthesis II,
vitamin E biosynthesis 		0.69 0.46 -0.44 C0016