AT4G18130 : phytochrome E
Query Information
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AGICode AT4G18130
Description phytochrome E
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G18130 phytochrome E phytochrome E 1 0.31 -0.31
2 AT5G22760 PHD finger family protein 0.84 0.33 -0.31
3 AT4G37460 Tetratricopeptide repeat (TPR)-like superfamily protein SUPPRESSOR OF RPS4-RLD 1 0.81 0.31 -0.3
4 AT3G43220 Phosphoinositide phosphatase family protein 0.76 0.31 -0.33
5 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 0.75 0.3 -0.3
6 AT1G17440 Transcription initiation factor TFIID subunit A CYTOKININ-HYPERSENSITIVE 1,
ENHANCED ETHYLENE RESPONSE 4,
TBP-ASSOCIATED FACTOR 12B		 0.74 0.31 -0.31
7 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 0.74 0.33 -0.32
8 AT2G45990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 312
Blast hits to 312 proteins in 90 species: Archae - 0;
Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 0.74 0.31 -0.3
9 AT1G24706 THO2 AtTHO2, EMBRYO DEFECTIVE 2793,
THO2		 0.73 0.3 -0.3
10 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein 0.72 0.32 -0.31
11 AT1G80460 Actin-like ATPase superfamily protein GLI1, nonhost resistance to P. s.
phaseolicola 1		 -0.71 0.32 -0.3
12 AT5G20840 Phosphoinositide phosphatase family protein 0.71 0.32 -0.34
13 AT5G67030 zeaxanthin epoxidase (ZEP) (ABA1) ABA DEFICIENT 1, ARABIDOPSIS
THALIANA ABA DEFICIENT 1,
ARABIDOPSIS THALIANA ZEAXANTHIN
EPOXIDASE, IMPAIRED IN
BABA-INDUCED STERILITY 3, LOW
EXPRESSION OF OSMOTIC
STRESS-RESPONSIVE GENES 6,
NON-PHOTOCHEMICAL QUENCHING 2,
ZEAXANTHIN EPOXIDASE		 0.71 0.33 -0.31
14 AT1G67230 little nuclei1 CROWDED NUCLEI 1, LITTLE NUCLEI1 0.7 0.31 -0.3
15 AT5G66320 GATA transcription factor 5 GATA transcription factor 5 0.7 0.31 -0.31
16 AT3G02830 zinc finger protein 1 zinc finger protein 1 0.7 0.31 -0.31
17 AT1G76550 Phosphofructokinase family protein -0.7 0.32 -0.32
18 AT1G07410 RAB GTPase homolog A2B ARABIDOPSIS RAB GTPASE HOMOLOG
A2B, RAB GTPase homolog A2B, RAB
GTPASE HOMOLOG A2B, RAB GTPase
homolog A2B		 -0.7 0.31 -0.3
19 AT3G50380 Protein of unknown function (DUF1162) 0.69 0.31 -0.31
20 AT4G37270 heavy metal atpase 1 ARABIDOPSIS THALIANA HEAVY METAL
ATPASE 1, heavy metal atpase 1		 0.69 0.3 -0.32
21 AT2G03150 ATP/GTP-binding protein family embryo defective 1579 0.69 0.32 -0.3
22 AT4G18810 NAD(P)-binding Rossmann-fold superfamily protein 0.69 0.29 -0.31
23 AT1G10640 Pectin lyase-like superfamily protein 0.68 0.33 -0.29
24 AT1G26150 proline-rich extensin-like receptor kinase 10 proline-rich extensin-like
receptor kinase 10, proline-rich
extensin-like receptor kinase 10		 0.68 0.32 -0.31
25 AT5G58200 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.68 0.3 -0.33
26 AT5G24670 Cytidine/deoxycytidylate deaminase family protein EMBRYO DEFECTIVE 2820, tRNA
adenosine deaminase 3		 0.68 0.32 -0.32
27 AT2G21340 MATE efflux family protein 0.68 0.32 -0.31
28 ATCG00760 ribosomal protein L36 ribosomal protein L36 0.68 0.32 -0.31
29 AT5G60600 4-hydroxy-3-methylbut-2-enyl diphosphate synthase CHLOROPLAST BIOGENESIS 4,
CONSTITUTIVE SUBTILISIN 3, GCPE,
4-hydroxy-3-methylbut-2-enyl
diphosphate synthase, ISPG		 0.68 0.32 -0.32
30 AT3G14980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.68 0.31 -0.33
31 AT4G03205 Coproporphyrinogen III oxidase hemf2 0.68 0.31 -0.33
32 AT1G79280 nuclear pore anchor TRANSLOCATED PROMOTER REGION,
nuclear pore anchor		 0.68 0.32 -0.32
33 AT3G27260 global transcription factor group E8 global transcription factor group
E8		 0.68 0.32 -0.33
34 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 0.68 0.31 -0.3
35 AT3G54770 RNA-binding (RRM/RBD/RNP motifs) family protein -0.67 0.32 -0.34
36 AT3G09160 RNA-binding (RRM/RBD/RNP motifs) family protein 0.67 0.3 -0.32
37 AT1G14660 Na+/H+ exchanger 8 Na+/H+ exchanger 8, Na+/H+
exchanger 8, SODIUM HYDROGEN
EXCHANGER 8		 0.67 0.32 -0.33
38 AT2G39340 SAC3/GANP/Nin1/mts3/eIF-3 p25 family AtSAC3A, yeast Sac3 homolog A 0.67 0.3 -0.31
39 AT3G13040 myb-like HTH transcriptional regulator family protein 0.67 0.33 -0.35
40 AT5G55940 Uncharacterised protein family (UPF0172) embryo defective 2731 -0.67 0.31 -0.3
41 AT5G09410 ethylene induced calmodulin binding protein calmodulin-binding transcription
activator 1, ethylene induced
calmodulin binding protein		 0.67 0.31 -0.31
42 AT5G35180 Protein of unknown function (DUF1336) 0.67 0.33 -0.31
43 AT1G70610 transporter associated with antigen processing protein 1 ATP-binding cassette B26,
transporter associated with
antigen processing protein 1,
transporter associated with
antigen processing protein 1		 0.66 0.32 -0.32
44 AT4G24450 phosphoglucan, water dikinase ATGWD2, GWD3, phosphoglucan, water
dikinase		 0.66 0.32 -0.31
45 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 0.66 0.32 -0.32
46 AT5G40200 DegP protease 9 DegP protease 9 -0.66 0.32 -0.34
47 ATCG00770 ribosomal protein S8 ribosomal protein S8 0.66 0.32 -0.34
48 AT5G56870 beta-galactosidase 4 beta-galactosidase 4 -0.66 0.31 -0.33
49 AT1G54260 winged-helix DNA-binding transcription factor family
protein		 0.66 0.32 -0.33
50 AT1G01040 dicer-like 1 ABNORMAL SUSPENSOR 1, DICER-LIKE
1, CARPEL FACTORY, dicer-like 1,
EMBRYO DEFECTIVE 60, EMBRYO
DEFECTIVE 76, SHORT INTEGUMENTS 1,
SUSPENSOR 1		 0.66 0.3 -0.29
51 AT2G25850 poly(A) polymerase 2 poly(A) polymerase 2 0.66 0.31 -0.32
52 AT1G79830 golgin candidate 5 golgin candidate 5 0.66 0.32 -0.3
53 AT1G73990 signal peptide peptidase signal peptide peptidase, SPPA1 0.66 0.32 -0.32
54 AT1G55970 histone acetyltransferase of the CBP family 4 HAC04, histone acetyltransferase
of the CBP family 4, HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 6, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 04, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 4		 0.66 0.32 -0.31
55 AT2G13370 chromatin remodeling 5 chromatin remodeling 5 0.66 0.32 -0.32
56 AT1G21580 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.66 0.31 -0.32
57 ATCG00740 RNA polymerase subunit alpha RNA polymerase subunit alpha 0.65 0.32 -0.31
58 AT2G32950 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS THALIANA CONSTITUTIVE
PHOTOMORPHOGENIC 1, CONSTITUTIVE
PHOTOMORPHOGENIC 1, DEETIOLATED
MUTANT 340, EMBRYO DEFECTIVE 168,
FUSCA 1		 0.65 0.3 -0.32
59 AT1G77800 PHD finger family protein 0.65 0.31 -0.31
60 AT3G05020 acyl carrier protein 1 ACYL CARRIER PROTEIN, acyl carrier
protein 1		 -0.65 0.34 -0.32
61 AT3G51950 Zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 0.65 0.32 -0.31
62 AT5G24620 Pathogenesis-related thaumatin superfamily protein 0.65 0.31 -0.33
63 AT4G34040 RING/U-box superfamily protein 0.65 0.32 -0.32
64 AT3G13960 growth-regulating factor 5 growth-regulating factor 5,
growth-regulating factor 5		 0.65 0.32 -0.31
65 AT1G52570 phospholipase D alpha 2 phospholipase D alpha 2 0.65 0.33 -0.31
66 AT2G41810 Protein of unknown function, DUF642 -0.65 0.34 -0.3
67 AT2G30050 transducin family protein / WD-40 repeat family protein -0.65 0.31 -0.32
68 AT2G29650 phosphate transporter 4;1 anion transporter 1, phosphate
transporter 4;1		 0.65 0.29 -0.31
69 ATCG00750 ribosomal protein S11 ribosomal protein S11 0.65 0.3 -0.31
70 AT1G74030 enolase 1 enolase 1 -0.65 0.32 -0.31
71 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 0.65 0.32 -0.33
72 AT3G04030 Homeodomain-like superfamily protein 0.64 0.31 -0.35
73 AT1G19360 Nucleotide-diphospho-sugar transferase family protein reduced residual arabinose 3 -0.64 0.31 -0.32
74 AT3G14720 MAP kinase 19 ARABIDOPSIS THALIANA MAP KINASE
19, MAP kinase 19		 0.64 0.33 -0.33
75 AT4G08460 Protein of unknown function (DUF1644) -0.64 0.3 -0.32
76 AT5G03650 starch branching enzyme 2.2 starch branching enzyme 2.2 0.64 0.32 -0.31
77 AT3G12030 Protein of unknown function DUF106, transmembrane -0.64 0.32 -0.3
78 AT5G01510 Protein of unknown function, DUF647 ROOT UV-B SENSITIVE 5 0.64 0.3 -0.31
79 AT5G07280 Leucine-rich repeat transmembrane protein kinase EXCESS MICROSPOROCYTES1, EXTRA
SPOROGENOUS CELLS		 0.64 0.31 -0.32
80 AT4G32551 LisH dimerisation motif;WD40/YVTN repeat-like-containing
domain		 LEUNIG, ROTUNDA 2 0.64 0.31 -0.33
81 AT3G09920 phosphatidyl inositol monophosphate 5 kinase phosphatidyl inositol
monophosphate 5 kinase		 0.64 0.31 -0.3
82 AT1G13910 Leucine-rich repeat (LRR) family protein 0.64 0.33 -0.33
83 AT3G55850 Amidohydrolase family LONG AFTER FAR-RED 3, LONG AFTER
FAR-RED 3 ISOFORM 1, LAF3 ISOFORM
2		 0.64 0.32 -0.31
84 AT2G04230 FBD, F-box and Leucine Rich Repeat domains containing
protein		 0.63 0.33 -0.33
85 AT3G50870 GATA type zinc finger transcription factor family protein GATA TRANSCRIPTION FACTOR 18,
HANABA TANARU, MONOPOLE		 -0.63 0.33 -0.28
86 AT1G07010 Calcineurin-like metallo-phosphoesterase superfamily
protein		 AtSLP1, Shewenella-like protein
phosphatase 1		 0.63 0.32 -0.3
87 AT4G26630 DEK domain-containing chromatin associated protein 0.63 0.29 -0.32
88 AT3G22380 time for coffee TIME FOR COFFEE 0.63 0.3 -0.31
89 AT2G21380 Kinesin motor family protein 0.63 0.32 -0.33
90 AT2G42270 U5 small nuclear ribonucleoprotein helicase 0.63 0.32 -0.34
91 AT3G33530 Transducin family protein / WD-40 repeat family protein 0.63 0.3 -0.33
92 AT1G02300 Cysteine proteinases superfamily protein 0.63 0.34 -0.31
93 AT3G50010 Cysteine/Histidine-rich C1 domain family protein -0.63 0.34 -0.34
94 AT4G02430 RNA-binding (RRM/RBD/RNP motifs) family protein Serine/Arginine-Rich Protein
Splicing Factor 34b,
Serine/Arginine-Rich Protein
Splicing Factor 34b		 0.63 0.3 -0.32
95 AT3G01180 starch synthase 2 starch synthase 2, starch synthase
2		 0.63 0.3 -0.31
96 AT5G48560 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.63 0.32 -0.3
97 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 0.63 0.31 -0.34
98 AT2G27490 dephospho-CoA kinase family ATCOAE 0.62 0.33 -0.31
99 AT5G65480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G38060.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.62 0.33 -0.3
100 AT5G45610 protein dimerizations SENSITIVE TO UV 2 0.62 0.33 -0.29
101 AT5G15540 PHD finger family protein ARABIDOPSIS THALIANA
SISTER-CHROMATID COHESION 2,
EMBRYO DEFECTIVE 2773,
SISTER-CHROMATID COHESION 2		 0.62 0.31 -0.31
102 AT4G37160 SKU5 similar 15 SKU5 similar 15 -0.62 0.33 -0.31
103 AT4G36690 U2 snRNP auxilliary factor, large subunit, splicing factor ATU2AF65A 0.62 0.33 -0.32
104 AT1G26130 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 0.62 0.29 -0.33
105 AT4G09150 T-complex protein 11 0.62 0.3 -0.31
106 AT4G32660 Protein kinase superfamily protein AME3 0.62 0.32 -0.31
107 AT4G33210 F-box family protein SLOW MOTION 0.62 0.32 -0.29
108 AT1G73960 TBP-associated factor 2 TBP-associated factor 2 0.62 0.3 -0.32
109 AT5G20950 Glycosyl hydrolase family protein -0.62 0.33 -0.33
110 AT5G60950 COBRA-like protein 5 precursor COBRA-like protein 5 precursor -0.61 0.32 -0.32
111 AT3G07900 O-fucosyltransferase family protein -0.61 0.29 -0.31
112 AT1G14220 Ribonuclease T2 family protein -0.61 0.29 -0.31
113 AT2G23630 SKU5 similar 16 SKU5 similar 16 -0.61 0.31 -0.32
114 AT2G35270 Predicted AT-hook DNA-binding family protein GIANT KILLER -0.61 0.32 -0.35
115 AT1G13950 eukaryotic elongation factor 5A-1 EUKARYOTIC ELONGATION FACTOR 5A-1,
EIF-5A, EUKARYOTIC ELONGATION
FACTOR 5A, eukaryotic elongation
factor 5A-1		 -0.61 0.31 -0.31
116 AT1G12160 Flavin-binding monooxygenase family protein -0.61 0.34 -0.32
117 AT1G27340 Galactose oxidase/kelch repeat superfamily protein -0.6 0.32 -0.32
118 AT5G19830 Peptidyl-tRNA hydrolase family protein -0.6 0.29 -0.31
119 AT1G56680 Chitinase family protein -0.6 0.33 -0.29
120 AT3G12370 Ribosomal protein L10 family protein -0.6 0.31 -0.32
121 AT3G62280 GDSL-like Lipase/Acylhydrolase superfamily protein -0.59 0.31 -0.31
122 AT5G59380 methyl-CPG-binding domain 6 ATMBD6, methyl-CPG-binding domain
6		 -0.59 0.32 -0.31
123 AT5G11540 D-arabinono-1,4-lactone oxidase family protein -0.58 0.32 -0.32
124 AT2G33790 arabinogalactan protein 30 arabinogalactan protein 30,
ATAGP30		 -0.58 0.31 -0.33
125 AT3G15630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast
hits to 61 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.34 -0.3
126 AT4G18510 CLAVATA3/ESR-related 2 CLAVATA3/ESR-related 2 -0.58 0.3 -0.34
127 AT5G56540 arabinogalactan protein 14 arabinogalactan protein 14,
ATAGP14		 -0.58 0.31 -0.32
128 AT1G13670 unknown protein; Has 22 Blast hits to 22 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.3 -0.31
129 AT5G09700 Glycosyl hydrolase family protein -0.57 0.31 -0.32
130 AT4G02810 Protein of unknown function (DUF3049) FANTASTIC FOUR 1 -0.57 0.32 -0.31
131 AT2G24300 Calmodulin-binding protein -0.56 0.34 -0.32
132 AT2G37120 S1FA-like DNA-binding protein -0.55 0.31 -0.31
133 AT3G58080 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.31 -0.32
134 AT5G04470 cyclin-dependent protein kinase inhibitors SIAMESE -0.55 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
135 C0210 Phytol E-Phytol Phytol chlorophyll a degradation II,
chlorophyll a degradation,
phytol salvage pathway 		0.66 0.45 -0.46 C0210
136 C0232 Shikimic acid - Shikimate phenylpropanoid biosynthesis,
chorismate biosynthesis,
simple coumarins biosynthesis 		0.65 0.32 -0.31 C0232