AT4G17940 : -
Query Information
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AGICode AT4G17940
Description Tetratricopeptide repeat (TPR)-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein 1 0.31 -0.31
2 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8		 0.86 0.3 -0.3
3 AT4G27470 RING membrane-anchor 3 ATRMA3, RING membrane-anchor 3 0.84 0.32 -0.31
4 AT5G19860 Protein of unknown function, DUF538 0.82 0.32 -0.3
5 AT1G07230 non-specific phospholipase C1 non-specific phospholipase C1 0.8 0.31 -0.31
6 AT4G19860 alpha/beta-Hydrolases superfamily protein 0.8 0.34 -0.31
7 AT1G78890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.8 0.31 -0.35
8 AT2G34780 maternal effect embryo arrest 22 EMBRYO DEFECTIVE 1611, MATERNAL
EFFECT EMBRYO ARREST 22		 -0.79 0.3 -0.3
9 AT3G51000 alpha/beta-Hydrolases superfamily protein 0.78 0.31 -0.33
10 AT1G21410 F-box/RNI-like superfamily protein SKP2A 0.78 0.32 -0.31
11 AT5G54080 homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase 0.78 0.32 -0.31
12 AT5G60360 aleurain-like protease aleurain-like protease,
aleurain-like protease, SENESCENCE
ASSOCIATED GENE2		 0.77 0.32 -0.32
13 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 -0.77 0.29 -0.32
14 AT4G27990 YGGT family protein ATYLMG1-2, YLMG1-2 0.77 0.3 -0.32
15 AT5G58740 HSP20-like chaperones superfamily protein 0.77 0.31 -0.29
16 AT3G60180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.76 0.31 -0.32
17 AT3G01520 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.75 0.32 -0.31
18 AT3G58170 BET1P/SFT1P-like protein 14A ATBET11, ARABIDOPSIS THALIANA
BET1P/SFT1P-LIKE PROTEIN 14A,
BET11, BET1P/SFT1P-like protein
14A		 0.75 0.34 -0.32
19 AT2G40830 RING-H2 finger C1A RING-H2 finger C1A 0.74 0.31 -0.32
20 AT3G10690 DNA GYRASE A DNA GYRASE A -0.74 0.31 -0.3
21 AT3G14740 RING/FYVE/PHD zinc finger superfamily protein -0.74 0.31 -0.32
22 AT4G01610 Cysteine proteinases superfamily protein 0.74 0.32 -0.3
23 AT2G27840 histone deacetylase-related / HD-related HISTONE DEACETYLASE 13, HDT04,
HDT4		 -0.74 0.31 -0.31
24 AT4G30840 Transducin/WD40 repeat-like superfamily protein -0.74 0.31 -0.34
25 AT1G20580 Small nuclear ribonucleoprotein family protein -0.74 0.33 -0.32
26 AT4G38460 geranylgeranyl reductase geranylgeranyl reductase 0.73 0.32 -0.3
27 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 PIGMENT DEFECTIVE 340 -0.73 0.31 -0.31
28 AT3G06170 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 0.73 0.31 -0.32
29 AT2G07340 PREFOLDIN 1 PREFOLDIN 1 -0.73 0.33 -0.33
30 AT3G08860 PYRIMIDINE 4 PYRIMIDINE 4 0.73 0.33 -0.3
31 AT3G06610 DNA-binding enhancer protein-related -0.73 0.33 -0.33
32 AT3G16840 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.73 0.32 -0.32
33 AT1G09660 RNA-binding KH domain-containing protein -0.72 0.32 -0.3
34 AT5G64816 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.72 0.32 -0.31
35 AT4G11420 eukaryotic translation initiation factor 3A ATEIF3A-1, ATTIF3A1, eukaryotic
translation initiation factor 3A,
EIF3A-1, TIF3A1		 -0.72 0.3 -0.33
36 AT3G57000 nucleolar essential protein-related -0.72 0.32 -0.31
37 AT5G05230 RING/U-box superfamily protein 0.72 0.32 -0.3
38 AT1G27290 unknown protein; Has 44 Blast hits to 44 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.72 0.29 -0.31
39 AT2G28600 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.72 0.32 -0.32
40 AT4G27380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.72 0.32 -0.3
41 AT1G47960 cell wall / vacuolar inhibitor of fructosidase 1 CELL WALL / VACUOLAR INHIBITOR OF
FRUCTOSIDASE 1, cell wall /
vacuolar inhibitor of fructosidase
1		 0.72 0.31 -0.3
42 AT3G11510 Ribosomal protein S11 family protein -0.71 0.28 -0.33
43 AT3G21110 purin 7 ATPURC, purin 7, PURIN C -0.71 0.31 -0.33
44 AT1G60080 3'-5'-exoribonuclease family protein -0.71 0.31 -0.3
45 AT5G20160 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.71 0.31 -0.33
46 AT4G05610 transposable element gene -0.71 0.35 -0.34
47 AT3G07870 F-box and associated interaction domains-containing protein 0.71 0.31 -0.33
48 AT2G24120 DNA/RNA polymerases superfamily protein PIGMENT DEFECTIVE 319, SCABRA 3 -0.71 0.31 -0.31
49 AT3G24320 MUTL protein homolog 1 ATMSH1, CHLOROPLAST MUTATOR, CHM1,
MUTL protein homolog 1		 -0.71 0.3 -0.33
50 AT4G20440 small nuclear ribonucleoprotein associated protein B small nuclear ribonucleoprotein
associated protein B		 -0.71 0.33 -0.32
51 AT4G20980 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 -0.71 0.33 -0.32
52 AT3G56090 ferritin 3 ferritin 3, ferritin 3 -0.71 0.31 -0.33
53 AT3G06700 Ribosomal L29e protein family -0.71 0.32 -0.33
54 AT4G34740 GLN phosphoribosyl pyrophosphate amidotransferase 2 GLN phosphoribosyl pyrophosphate
amidotransferase 2, GLN
phosphoribosyl pyrophosphate
amidotransferase 2, ATPURF2,
CHLOROPLAST IMPORT APPARATUS 1		 -0.7 0.31 -0.32
55 AT4G16520 Ubiquitin-like superfamily protein autophagy 8f 0.7 0.32 -0.33
56 AT1G11280 S-locus lectin protein kinase family protein -0.7 0.32 -0.31
57 AT5G18820 TCP-1/cpn60 chaperonin family protein chaperonin-60alpha2, embryo
defective 3007		 -0.7 0.3 -0.3
58 AT5G05470 eukaryotic translation initiation factor 2 alpha subunit ATEIF2-A2, eukaryotic translation
initiation factor 2 alpha subunit,
EIF2-A2		 -0.7 0.34 -0.31
59 AT5G26360 TCP-1/cpn60 chaperonin family protein -0.7 0.32 -0.32
60 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 -0.7 0.3 -0.31
61 AT1G78450 SOUL heme-binding family protein -0.69 0.29 -0.32
62 AT3G20770 Ethylene insensitive 3 family protein AtEIN3, ETHYLENE-INSENSITIVE3 0.69 0.29 -0.32
63 AT1G34065 S-adenosylmethionine carrier 2 S-adenosylmethionine carrier 2 -0.69 0.31 -0.31
64 AT1G31860 histidine biosynthesis bifunctional protein (HISIE) AT-IE, HISTIDINE BIOSYNTHESIS 2 -0.69 0.31 -0.29
65 AT3G61760 DYNAMIN-like 1B DYNAMIN-like 1B, DYNAMIN-like 1B -0.69 0.3 -0.33
66 AT3G01160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: NUC153
(InterPro:IPR012580); Has 36638 Blast hits to 21323
proteins in 1057 species: Archae - 109; Bacteria - 2369;
Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses -
489; Other Eukaryotes - 13360 (source: NCBI BLink).		 -0.69 0.31 -0.33
67 AT3G58510 DEA(D/H)-box RNA helicase family protein -0.69 0.32 -0.32
68 AT1G59990 DEA(D/H)-box RNA helicase family protein EMBRYO DEFECTIVE 3108, RNA
helicase 22		 -0.69 0.33 -0.32
69 AT1G20230 Pentatricopeptide repeat (PPR) superfamily protein -0.69 0.33 -0.32
70 AT1G56090 Tetratricopeptide repeat (TPR)-like superfamily protein 0.69 0.28 -0.32
71 AT2G25100 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.69 0.31 -0.32
72 AT5G65760 Serine carboxypeptidase S28 family protein 0.69 0.32 -0.3
73 AT4G10620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.69 0.34 -0.31
74 AT5G59850 Ribosomal protein S8 family protein -0.69 0.32 -0.32
75 AT1G18070 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 -0.69 0.3 -0.35
76 AT5G63030 Thioredoxin superfamily protein glutaredoxin C1 0.69 0.33 -0.3
77 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.69 0.33 -0.3
78 AT2G22400 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.68 0.32 -0.3
79 AT2G40420 Transmembrane amino acid transporter family protein 0.68 0.32 -0.32
80 AT4G32520 serine hydroxymethyltransferase 3 SERINE HYDROXYMETHYLTRANSFERASE 3,
serine hydroxymethyltransferase 3		 -0.68 0.33 -0.32
81 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.68 0.3 -0.32
82 AT4G09320 Nucleoside diphosphate kinase family protein NDPK1 -0.68 0.31 -0.33
83 AT5G23480 SWIB/MDM2 domain;Plus-3;GYF -0.68 0.32 -0.32
84 AT3G15080 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.68 0.33 -0.31
85 AT3G02820 zinc knuckle (CCHC-type) family protein -0.68 0.32 -0.32
86 AT3G15460 Ribosomal RNA processing Brix domain protein -0.68 0.3 -0.3
87 AT4G22970 homolog of separase homolog of separase, homolog of
separase, SEPARASE, RADIALLY
SWOLLEN 4		 -0.68 0.32 -0.33
88 AT5G10960 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.68 0.3 -0.29
89 AT5G50810 translocase inner membrane subunit 8 translocase inner membrane subunit
8		 -0.68 0.31 -0.34
90 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein -0.68 0.33 -0.31
91 AT3G13230 RNA-binding KH domain-containing protein -0.68 0.32 -0.33
92 AT1G69620 ribosomal protein L34 ribosomal protein L34 -0.67 0.31 -0.32
93 AT3G08840 D-alanine--D-alanine ligase family 0.67 0.31 -0.32
94 AT1G70160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in
20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink).		 0.67 0.3 -0.32
95 AT2G21950 SKP1 interacting partner 6 SKP1 interacting partner 6 0.67 0.32 -0.31
96 AT5G58370 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.67 0.29 -0.32
97 AT1G66520 formyltransferase, putative pigment defective 194 -0.67 0.32 -0.32
98 AT1G17690 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleus; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Digestive organ
expansion factor, predicted (InterPro:IPR010678); Has 25006
Blast hits to 13379 proteins in 904 species: Archae - 102;
Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants -
1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI
BLink).		 nucleolar factor 1 -0.67 0.31 -0.29
99 AT5G12470 Protein of unknown function (DUF3411) -0.67 0.31 -0.3
100 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog -0.67 0.3 -0.31
101 AT1G50920 Nucleolar GTP-binding protein -0.67 0.32 -0.32
102 AT3G17970 translocon at the outer membrane of chloroplasts 64-III translocon at the outer membrane
of chloroplasts 64-III, translocon
at the outer membrane of
chloroplasts 64-III		 -0.67 0.3 -0.3
103 AT1G28260 Telomerase activating protein Est1 0.67 0.32 -0.31
104 AT2G22660 Protein of unknown function (duplicated DUF1399) 0.67 0.3 -0.29
105 AT3G46040 ribosomal protein S15A D ribosomal protein S15A D -0.67 0.31 -0.32
106 AT3G09720 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.67 0.31 -0.33
107 AT1G02816 Protein of unknown function, DUF538 0.66 0.31 -0.31
108 AT2G35680 Phosphotyrosine protein phosphatases superfamily protein 0.66 0.3 -0.32
109 AT1G29570 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.65 0.32 -0.32
110 AT1G32700 PLATZ transcription factor family protein 0.65 0.31 -0.3
111 AT1G03610 Protein of unknown function (DUF789) 0.65 0.31 -0.32
112 AT4G26160 atypical CYS HIS rich thioredoxin 1 atypical CYS HIS rich thioredoxin
1		 0.65 0.31 -0.3
113 AT1G80440 Galactose oxidase/kelch repeat superfamily protein 0.65 0.34 -0.3
114 AT3G03470 cytochrome P450, family 87, subfamily A, polypeptide 9 cytochrome P450, family 87,
subfamily A, polypeptide 9		 0.65 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
115 C0016 S-Adenosylmethionine S-Adenosyl-L-methionine S-Adenosyl-L-methionine ethylene biosynthesis I (plants),
scopoletin biosynthesis,
quercetinsulphates biosynthesis,
siroheme biosynthesis,
gibberellin inactivation II (methylation),
suberin biosynthesis,
volatile benzenoid biosynthesis I (ester formation),
S-adenosyl-L-methionine cycle II,
methylhalides biosynthesis (plants),
S-methylmethionine cycle,
ubiquinol-9 biosynthesis (eukaryotic),
nicotianamine biosynthesis,
methionine biosynthesis II,
spermine biosynthesis,
choline biosynthesis II,
diphthamide biosynthesis,
homogalacturonan biosynthesis,
phosphatidylcholine biosynthesis II,
methylquercetin biosynthesis,
plastoquinol biosynthesis,
chlorophyllide a biosynthesis I,
ferulate and sinapate biosynthesis,
ubiquinol-10 biosynthesis (eukaryotic),
phenylpropanoid biosynthesis,
free phenylpropanoid acid biosynthesis,
seleno-amino acid detoxification and volatilization I,
plant sterol biosynthesis,
lipoate biosynthesis and incorporation I,
methyl indole-3-acetate interconversion,
cyclopropane and cyclopropene fatty acid biosynthesis,
spermidine biosynthesis I,
thiamine biosynthesis II,
methionine salvage pathway,
spermidine hydroxycinnamic acid conjugates biosynthesis,
simple coumarins biosynthesis,
phosphatidylcholine biosynthesis IV,
glutathione-mediated detoxification II,
S-adenosyl-L-methionine biosynthesis,
methionine degradation I (to homocysteine),
phosphatidylcholine biosynthesis III,
phylloquinol biosynthesis,
choline biosynthesis I,
biotin biosynthesis II,
vitamin E biosynthesis 		-0.76 0.46 -0.46 C0016
116 C0170 MST_2128.3 - - - -0.74 0.51 -0.44
117 C0023 1,6-Anhydro-β-glucose 1,6-Anhydro-β-D-glucose Levoglucosan - 0.7 0.45 -0.44 C0023
118 C0160 MST_1509.5 - - - 0.69 0.47 -0.45
119 C0163 MST_1589.2 - - - 0.67 0.46 -0.49
120 C0161 MST_1566.3 - - - 0.65 0.45 -0.45