AT4G13750 : EMBRYO DEFECTIVE 2597
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G13750
Description Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G13750 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 EMBRYO DEFECTIVE 2597, NO VEIN 1 0.33 -0.31
2 AT3G06530 ARM repeat superfamily protein 0.86 0.3 -0.32
3 AT5G17270 Protein prenylyltransferase superfamily protein 0.85 0.31 -0.32
4 AT1G29940 nuclear RNA polymerase A2 nuclear RNA polymerase A2 0.84 0.31 -0.32
5 AT5G64420 DNA polymerase V family 0.83 0.3 -0.29
6 AT1G31970 DEA(D/H)-box RNA helicase family protein STRESS RESPONSE SUPPRESSOR 1 0.83 0.3 -0.32
7 AT1G79150 binding 0.83 0.3 -0.32
8 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.82 0.3 -0.31
9 AT4G26600 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.82 0.3 -0.31
10 AT4G00355 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits
to 97 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 ATG8-interacting protein 2 -0.82 0.32 -0.3
11 AT3G57940 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.81 0.31 -0.34
12 AT3G07660 Kinase-related protein of unknown function (DUF1296) 0.81 0.31 -0.3
13 AT5G67240 small RNA degrading nuclease 3 small RNA degrading nuclease 3 0.8 0.28 -0.32
14 AT2G32730 26S proteasome regulatory complex, non-ATPase subcomplex,
Rpn2/Psmd1 subunit		 0.8 0.31 -0.31
15 AT5G61970 signal recognition particle-related / SRP-related 0.8 0.32 -0.32
16 AT1G14610 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) TWIN 2, VALYL TRNA SYNTHETASE 0.8 0.29 -0.32
17 AT2G40360 Transducin/WD40 repeat-like superfamily protein 0.8 0.3 -0.33
18 AT1G76810 eukaryotic translation initiation factor 2 (eIF-2) family
protein		 0.79 0.31 -0.3
19 AT2G05120 Nucleoporin, Nup133/Nup155-like 0.79 0.31 -0.3
20 AT3G12270 protein arginine methyltransferase 3 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 3,
protein arginine methyltransferase
3		 0.79 0.32 -0.3
21 AT3G24080 KRR1 family protein 0.79 0.32 -0.32
22 AT4G12750 Homeodomain-like transcriptional regulator 0.78 0.33 -0.32
23 AT1G69070 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nop14-like protein (InterPro:IPR007276); Has 69842 Blast
hits to 35213 proteins in 1572 species: Archae - 363;
Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants -
2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI
BLink).		 0.78 0.34 -0.32
24 AT1G29900 carbamoyl phosphate synthetase B carbamoyl phosphate synthetase B,
VENOSA 3		 0.78 0.32 -0.31
25 AT4G23540 ARM repeat superfamily protein 0.78 0.32 -0.3
26 AT2G43650 Sas10/U3 ribonucleoprotein (Utp) family protein EMBRYO DEFECTIVE 2777 0.77 0.32 -0.33
27 AT4G19610 nucleotide binding;nucleic acid binding;RNA binding 0.77 0.31 -0.3
28 AT2G28520 vacuolar proton ATPase A1 vacuolar proton ATPase A1 0.77 0.31 -0.32
29 AT3G59020 ARM repeat superfamily protein 0.77 0.33 -0.32
30 AT2G18220 Noc2p family 0.77 0.31 -0.3
31 AT1G09020 homolog of yeast sucrose nonfermenting 4 ATSNF4, homolog of yeast sucrose
nonfermenting 4		 0.77 0.31 -0.32
32 AT1G15440 periodic tryptophan protein 2 (PERIODIC TRYPTOPHAN PROTEIN 2,
periodic tryptophan protein 2		 0.77 0.32 -0.3
33 AT5G42540 exoribonuclease 2 EXORIBONUCLEASE 2, exoribonuclease
2		 0.77 0.29 -0.3
34 AT1G04945 HIT-type Zinc finger family protein 0.77 0.28 -0.33
35 AT1G06900 Insulinase (Peptidase family M16) family protein 0.77 0.31 -0.31
36 AT1G03830 guanylate-binding family protein 0.76 0.3 -0.33
37 AT2G22125 binding cellulose synthase-interactive
protein 1, POM-POM 2		 0.76 0.33 -0.32
38 AT3G07060 NHL domain-containing protein embryo defective 1974 0.76 0.34 -0.31
39 AT3G52140 tetratricopeptide repeat (TPR)-containing protein 0.76 0.33 -0.34
40 AT1G68990 male gametophyte defective 3 male gametophyte defective 3 0.76 0.32 -0.3
41 AT3G02650 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.32 -0.32
42 AT3G11450 DnaJ domain ;Myb-like DNA-binding domain 0.76 0.32 -0.34
43 AT5G45140 nuclear RNA polymerase C2 nuclear RNA polymerase C2 0.76 0.3 -0.3
44 AT5G61960 MEI2-like protein 1 MEI2-like protein 1, MEI2-like
protein 1		 0.76 0.33 -0.35
45 AT3G44530 homolog of histone chaperone HIRA homolog of histone chaperone HIRA 0.76 0.34 -0.32
46 AT5G35910 Polynucleotidyl transferase, ribonuclease H fold protein
with HRDC domain		 0.76 0.33 -0.32
47 AT4G02400 U3 ribonucleoprotein (Utp) family protein 0.76 0.31 -0.3
48 AT3G11964 RNA binding;RNA binding 0.76 0.3 -0.3
49 AT5G43850 RmlC-like cupins superfamily protein ARD4, ATARD4 -0.75 0.32 -0.32
50 AT5G38720 unknown protein; Has 13419 Blast hits to 9093 proteins in
698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949;
Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes
- 5779 (source: NCBI BLink).		 0.75 0.32 -0.32
51 AT1G49540 elongator protein 2 Elongator subunit 2, elongator
protein 2		 0.75 0.31 -0.33
52 AT1G44910 pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A,
pre-mRNA-processing protein 40A		 0.75 0.33 -0.33
53 AT5G59980 Polymerase/histidinol phosphatase-like 0.75 0.31 -0.33
54 AT2G34750 RNA polymerase I specific transcription initiation factor
RRN3 protein		 0.75 0.32 -0.29
55 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.75 0.29 -0.33
56 AT1G04510 MOS4-associated complex 3A MOS4-associated complex 3A 0.75 0.29 -0.32
57 AT1G51380 DEA(D/H)-box RNA helicase family protein 0.75 0.31 -0.3
58 AT2G02560 cullin-associated and neddylation dissociated CULLIN-ASSOCIATED AND NEDDYLATION
DISSOCIATED 1, cullin-associated
and neddylation dissociated, ETA2,
HEMIVENATA, TIP120		 0.75 0.33 -0.33
59 AT2G17250 CCAAT-binding factor EMBRYO DEFECTIVE 2762 0.75 0.31 -0.31
60 AT4G04670 Met-10+ like family protein / kelch repeat-containing
protein		 0.75 0.3 -0.32
61 AT1G61640 Protein kinase superfamily protein 0.75 0.35 -0.31
62 AT1G29880 glycyl-tRNA synthetase / glycine--tRNA ligase 0.75 0.3 -0.31
63 AT3G56990 embryo sac development arrest 7 embryo sac development arrest 7 0.74 0.32 -0.32
64 AT1G06440 Ubiquitin carboxyl-terminal hydrolase family protein 0.74 0.32 -0.31
65 AT4G27640 ARM repeat superfamily protein 0.74 0.3 -0.32
66 AT1G48420 D-cysteine desulfhydrase 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, A. THALIANA
1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, D-cysteine
desulfhydrase, D-cysteine
desulfhydrase		 -0.74 0.3 -0.33
67 AT3G57660 nuclear RNA polymerase A1 nuclear RNA polymerase A1 0.74 0.3 -0.33
68 AT1G64790 ILITYHIA ILITYHIA 0.74 0.29 -0.34
69 AT5G20200 nucleoporin-related 0.74 0.31 -0.3
70 AT3G14120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Nuclear pore protein 84/107
(InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins
in 612 species: Archae - 19; Bacteria - 730; Metazoa -
2186; Fungi - 823; Plants - 382; Viruses - 37; Other
Eukaryotes - 1222 (source: NCBI BLink).		 0.74 0.33 -0.34
71 AT1G69630 F-box/RNI-like superfamily protein -0.74 0.33 -0.31
72 AT5G08305 Pentatricopeptide repeat (PPR) superfamily protein 0.74 0.3 -0.32
73 AT3G62310 RNA helicase family protein 0.73 0.34 -0.32
74 AT4G27010 CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis
N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72270.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 EMBRYO DEFECTIVE 2788 0.73 0.34 -0.33
75 AT5G65900 DEA(D/H)-box RNA helicase family protein 0.73 0.33 -0.31
76 AT2G40400 Protein of unknown function (DUF399 and DUF3411) 0.73 0.31 -0.3
77 AT3G12670 CTP synthase family protein embryo defective 2742 0.73 0.32 -0.32
78 AT1G13120 embryo defective 1745 0.73 0.33 -0.31
79 AT2G21710 Mitochondrial transcription termination factor family
protein		 embryo defective 2219 0.72 0.31 -0.3
80 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 0.72 0.34 -0.31
81 AT5G42920 THO complex, subunit 5 AtTHO5, THO5 0.72 0.33 -0.33
82 AT4G31210 DNA topoisomerase, type IA, core 0.72 0.31 -0.33
83 AT1G59760 RNA helicase, ATP-dependent, SK12/DOB1 protein AtMTR4, homolog of yeast MTR4 0.72 0.29 -0.34
84 AT2G36630 Sulfite exporter TauE/SafE family protein 0.72 0.32 -0.3
85 AT4G30990 ARM repeat superfamily protein 0.72 0.33 -0.3
86 AT5G16750 Transducin family protein / WD-40 repeat family protein TORMOZEMBRYO DEFECTIVE 0.72 0.32 -0.31
87 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein 0.72 0.32 -0.31
88 AT4G12240 zinc finger (C2H2 type) family protein 0.71 0.36 -0.32
89 AT5G23460 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.71 0.31 -0.34
90 AT3G49710 Pentatricopeptide repeat (PPR) superfamily protein 0.71 0.34 -0.34
91 AT1G76120 Pseudouridine synthase family protein 0.71 0.32 -0.31
92 AT1G09620 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 0.71 0.3 -0.33
93 AT1G67120 ATPases;nucleotide binding;ATP
binding;nucleoside-triphosphatases;transcription factor
binding		 0.71 0.3 -0.31
94 AT3G16840 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.71 0.31 -0.31
95 AT5G37680 ADP-ribosylation factor-like A1A ADP-ribosylation factor-like A1A,
ADP-ribosylation factor-like A1A		 -0.7 0.33 -0.3
96 AT2G21185 unknown protein; Has 9 Blast hits to 9 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.69 0.3 -0.31
97 AT2G40410 Staphylococcal nuclease homologue -0.68 0.34 -0.33
98 AT2G44300 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.68 0.31 -0.31
99 AT1G76960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: 8 growth stages; Has 8 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.67 0.3 -0.31
100 AT4G29420 F-box/RNI-like superfamily protein -0.67 0.3 -0.32
101 AT2G15230 lipase 1 lipase 1, lipase 1 -0.66 0.32 -0.32
102 AT3G23010 receptor like protein 36 receptor like protein 36, receptor
like protein 36		 -0.66 0.3 -0.31
103 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I
family protein		 -0.66 0.31 -0.33
104 AT4G16060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 42
Blast hits to 42 proteins in 16 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink).		 -0.66 0.29 -0.31
105 AT1G78890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.31 -0.3
106 AT2G41530 S-formylglutathione hydrolase ARABIDOPSIS THALIANA
S-FORMYLGLUTATHIONE HYDROLASE,
S-formylglutathione hydrolase		 -0.65 0.32 -0.31
107 AT1G27600 Nucleotide-diphospho-sugar transferases superfamily protein IRREGULAR XYLEM 9 Homolog,
IRREGULAR XYLEM 9-LIKE		 -0.64 0.31 -0.31
108 AT2G14560 Protein of unknown function (DUF567) LATE UPREGULATED IN RESPONSE TO
HYALOPERONOSPORA PARASITICA		 -0.64 0.32 -0.31
109 AT1G12680 phosphoenolpyruvate carboxylase-related kinase 2 phosphoenolpyruvate
carboxylase-related kinase 2		 -0.64 0.31 -0.32
110 AT1G19960 BEST Arabidopsis thaliana protein match is: transmembrane
receptors (TAIR:AT2G32140.1); Has 41 Blast hits to 41
proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa -
23; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes -
5 (source: NCBI BLink).		 -0.63 0.33 -0.34
111 AT1G47310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 45
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.63 0.34 -0.32
112 AT3G56400 WRKY DNA-binding protein 70 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 70, WRKY
DNA-binding protein 70		 -0.63 0.32 -0.31
113 AT4G38740 rotamase CYP 1 rotamase CYP 1 -0.63 0.33 -0.32
114 AT1G11840 glyoxalase I homolog glyoxalase I homolog, glyoxalase I
homolog		 -0.63 0.31 -0.32
115 AT1G06630 F-box/RNI-like superfamily protein -0.63 0.31 -0.35
116 AT1G01160 GRF1-interacting factor 2 GRF1-interacting factor 2 -0.63 0.31 -0.31
117 AT1G50740 Transmembrane proteins 14C -0.63 0.31 -0.3
118 AT3G61860 RNA-binding (RRM/RBD/RNP motifs) family protein arginine/serine-rich splicing
factor 31, arginine/serine-rich
splicing factor 31,
arginine/serine-rich splicing
factor 31, arginine/serine-rich
splicing factor 31		 -0.63 0.31 -0.32
119 AT5G24530 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 DOWNY MILDEW RESISTANT 6 -0.62 0.31 -0.3
120 AT5G42910 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.62 0.29 -0.32
121 AT2G39060 Nodulin MtN3 family protein AtSWEET9, SWEET9 -0.62 0.32 -0.31
122 AT3G58350 RESTRICTED TEV MOVEMENT 3 RESTRICTED TEV MOVEMENT 3 -0.61 0.32 -0.33
123 AT2G34470 urease accessory protein G PSKF109, urease accessory protein
G		 -0.61 0.29 -0.3
124 AT3G03150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast
hits to 39 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.32 -0.32
125 AT2G02400 NAD(P)-binding Rossmann-fold superfamily protein -0.61 0.31 -0.32
126 AT4G34500 Protein kinase superfamily protein -0.6 0.3 -0.32
127 AT1G60350 NAC domain containing protein 24 NAC domain containing protein 24,
NAC domain containing protein 24		 -0.6 0.34 -0.33
128 AT1G01670 RING/U-box superfamily protein -0.6 0.33 -0.31
129 AT1G16460 rhodanese homologue 2 ARABIDOPSIS THALIANA
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
SULFURTRANSFERASE 2,
SULFURTRANSFERASE 2		 -0.6 0.32 -0.32
130 AT3G13140 hydroxyproline-rich glycoprotein family protein -0.6 0.28 -0.31
131 AT4G31330 Protein of unknown function, DUF599 -0.6 0.29 -0.32
132 AT3G19790 unknown protein; Has 32 Blast hits to 26 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2;
Plants - 14; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.6 0.33 -0.3
133 AT3G43800 glutathione S-transferase tau 27 glutathione S-transferase tau 27,
glutathione S-transferase tau 27		 -0.6 0.31 -0.33
134 AT3G28940 AIG2-like (avirulence induced gene) family protein -0.59 0.32 -0.31
135 AT2G44000 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.59 0.29 -0.32
136 AT1G08450 calreticulin 3 A. thaliana calreticulin 3,
calreticulin 3, EMS-MUTAGENIZED
BRI1 SUPPRESSOR 2, PRIORITY IN
SWEET LIFE 1		 -0.59 0.3 -0.31
137 AT5G22460 alpha/beta-Hydrolases superfamily protein -0.59 0.31 -0.31
138 AT4G26070 MAP kinase/ ERK kinase 1 ATMEK1, MAP kinase/ ERK kinase 1,
MITOGEN ACTIVATED PROTEIN KINASE
KINASE 1, NMAPKK		 -0.59 0.31 -0.33
139 AT5G10960 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.59 0.3 -0.31
140 AT3G62800 double-stranded-RNA-binding protein 4 double-stranded-RNA-binding
protein 4		 -0.58 0.3 -0.32
141 AT2G28940 Protein kinase superfamily protein -0.58 0.3 -0.32
142 AT3G16990 Haem oxygenase-like, multi-helical -0.58 0.32 -0.32
143 AT1G21220 transposable element gene -0.58 0.3 -0.34
144 AT5G62080 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.58 0.3 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
145 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II 		-0.78 0.5 -0.46 C0228
146 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II 		0.76 0.44 -0.45 C0105