AT4G12340 : -
Query Information
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AGICode AT4G12340
Description copper ion binding
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G12340 copper ion binding 1 0.34 -0.34
2 AT5G19550 aspartate aminotransferase 2 ASPARTATE AMINOTRANSFERASE 2,
aspartate aminotransferase 2		 0.86 0.31 -0.33
3 AT3G62450 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.85 0.31 -0.31
4 AT5G17610 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.84 0.29 -0.32
5 AT5G66120 3-dehydroquinate synthase, putative 0.82 0.31 -0.32
6 AT5G26910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G58650.1); Has 1322 Blast hits
to 684 proteins in 162 species: Archae - 4; Bacteria - 497;
Metazoa - 157; Fungi - 101; Plants - 155; Viruses - 0;
Other Eukaryotes - 408 (source: NCBI BLink).		 -0.81 0.3 -0.31
7 AT5G11520 aspartate aminotransferase 3 aspartate aminotransferase 3,
YELLOW-LEAF-SPECIFIC GENE 4		 0.81 0.3 -0.29
8 AT5G62050 homolog of yeast oxidase assembly 1 (OXA1) ARABIDOPSIS THALIANA HOMOLOG OF
YEAST OXIDASE ASSEMBLY 1 (OXA1),
homolog of yeast oxidase assembly
1 (OXA1), HOMOLOG OF YEAST OXIDASE
ASSEMBLY 1 (OXA1) IN ARABIDOPSIS
THALIANA		 0.81 0.29 -0.32
9 AT3G17840 receptor-like kinase 902 receptor-like kinase 902 -0.8 0.32 -0.33
10 AT4G19170 nine-cis-epoxycarotenoid dioxygenase 4 carotenoid cleavage dioxygenase 4,
nine-cis-epoxycarotenoid
dioxygenase 4		 -0.8 0.31 -0.32
11 AT3G23150 Signal transduction histidine kinase, hybrid-type, ethylene
sensor		 ethylene response 2 0.8 0.34 -0.32
12 AT1G06180 myb domain protein 13 myb domain protein 13, ATMYBLFGN,
myb domain protein 13		 0.79 0.33 -0.32
13 AT2G32920 PDI-like 2-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 9, PDI-like
2-3, PROTEIN DISULFIDE ISOMERASE
9, PDI-like 2-3		 0.79 0.3 -0.33
14 AT2G27730 copper ion binding 0.79 0.33 -0.31
15 AT2G46390 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 4 Blast hits to 4
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 succinate dehydrogenase 8 0.79 0.32 -0.31
16 AT5G03290 isocitrate dehydrogenase V isocitrate dehydrogenase V 0.78 0.32 -0.32
17 AT5G60160 Zn-dependent exopeptidases superfamily protein 0.78 0.29 -0.32
18 AT5G11510 myb domain protein 3r-4 myb domain protein 3R4, myb domain
protein 3r-4		 -0.78 0.32 -0.31
19 AT1G74240 Mitochondrial substrate carrier family protein 0.78 0.31 -0.32
20 AT3G02090 Insulinase (Peptidase family M16) protein MPPBETA 0.77 0.31 -0.34
21 AT4G39080 vacuolar proton ATPase A3 vacuolar proton ATPase A3 0.77 0.29 -0.29
22 AT5G21105 Plant L-ascorbate oxidase 0.77 0.32 -0.33
23 AT1G74230 glycine-rich RNA-binding protein 5 glycine-rich RNA-binding protein 5 0.77 0.29 -0.31
24 AT1G69880 thioredoxin H-type 8 thioredoxin H-type 8, thioredoxin
H-type 8		 0.77 0.3 -0.34
25 AT5G34930 arogenate dehydrogenase 0.77 0.33 -0.32
26 AT3G12620 Protein phosphatase 2C family protein 0.77 0.31 -0.3
27 AT2G20390 unknown protein; Has 50 Blast hits to 50 proteins in 18
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.77 0.31 -0.3
28 AT2G47380 Cytochrome c oxidase subunit Vc family protein 0.77 0.32 -0.34
29 AT1G11600 cytochrome P450, family 77, subfamily B, polypeptide 1 cytochrome P450, family 77,
subfamily B, polypeptide 1		 -0.77 0.31 -0.32
30 AT5G62710 Leucine-rich repeat protein kinase family protein -0.77 0.3 -0.3
31 AT4G15550 indole-3-acetate beta-D-glucosyltransferase indole-3-acetate
beta-D-glucosyltransferase		 0.77 0.34 -0.32
32 AT5G20080 FAD/NAD(P)-binding oxidoreductase 0.77 0.32 -0.33
33 AT2G43820 UDP-glucosyltransferase 74F2 Arabidopsis thaliana salicylic
acid glucosyltransferase 1, GT,
salicylic acid glucosyltransferase
1, UDP-glucose:salicylic acid
glucosyltransferase 1,
UDP-glucosyltransferase 74F2		 0.77 0.33 -0.32
34 AT1G15670 Galactose oxidase/kelch repeat superfamily protein 0.77 0.32 -0.32
35 AT2G31060 elongation factor family protein EMBRYO DEFECTIVE 2785 0.77 0.31 -0.33
36 AT5G47800 Phototropic-responsive NPH3 family protein -0.77 0.34 -0.3
37 AT5G65460 kinesin like protein for actin based chloroplast movement 2 kinesin like protein for actin
based chloroplast movement 2,
kinesin CDKA ;1 associated 2		 -0.76 0.31 -0.31
38 AT1G73790 Protein of unknown function (DUF3743) 0.76 0.31 -0.32
39 AT2G04900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF423
(InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins
in 878 species: Archae - 0; Bacteria - 1498; Metazoa - 118;
Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes -
136 (source: NCBI BLink).		 0.76 0.34 -0.31
40 AT4G26710 ATPase, V0 complex, subunit E 0.76 0.3 -0.3
41 AT1G66240 homolog of anti-oxidant 1 ATATX1, homolog of anti-oxidant 1 0.76 0.33 -0.3
42 AT5G07800 Flavin-binding monooxygenase family protein -0.76 0.31 -0.31
43 AT2G39970 Mitochondrial substrate carrier family protein ABERRANT PEROXISOME MORPHOLOGY 3,
peroxisomal membrane protein 38,
peroxisomal NAD carrier		 0.76 0.32 -0.33
44 AT5G64400 CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST
Arabidopsis thaliana protein match is: Cox19-like CHCH
family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.75 0.32 -0.33
45 AT1G16220 Protein phosphatase 2C family protein -0.75 0.32 -0.32
46 AT2G30820 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G06660.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.75 0.33 -0.32
47 AT3G16270 ENTH/VHS family protein 0.75 0.32 -0.32
48 AT1G24050 RNA-processing, Lsm domain 0.75 0.29 -0.31
49 AT1G23790 Plant protein of unknown function (DUF936) -0.75 0.3 -0.29
50 AT5G56360 calmodulin-binding protein PRIORITY IN SWEET LIFE 4 0.75 0.33 -0.33
51 AT3G19300 Protein kinase superfamily protein -0.75 0.32 -0.33
52 AT5G42890 sterol carrier protein 2 STEROL CARRIER PROTEIN 2, sterol
carrier protein 2		 0.74 0.3 -0.32
53 AT3G17680 Kinase interacting (KIP1-like) family protein -0.74 0.32 -0.31
54 AT2G27580 A20/AN1-like zinc finger family protein 0.74 0.32 -0.32
55 AT5G47500 Pectin lyase-like superfamily protein pectin methylesterase 5 -0.74 0.3 -0.32
56 AT3G62400 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.74 0.31 -0.34
57 AT5G16960 Zinc-binding dehydrogenase family protein 0.74 0.33 -0.32
58 AT5G07220 BCL-2-associated athanogene 3 BCL-2-associated athanogene 3,
BCL-2-associated athanogene 3		 0.74 0.32 -0.32
59 AT2G05210 Nucleic acid-binding, OB-fold-like protein ATPOT1, Protection of Telomeres 1a -0.74 0.32 -0.31
60 AT4G29520 LOCATED IN: endoplasmic reticulum, plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: Saposin B
(InterPro:IPR008139); Has 137 Blast hits to 137 proteins in
50 species: Archae - 2; Bacteria - 0; Metazoa - 41; Fungi -
10; Plants - 36; Viruses - 0; Other Eukaryotes - 48
(source: NCBI BLink).		 0.74 0.3 -0.32
61 AT1G65900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 306 Blast hits to
306 proteins in 119 species: Archae - 19; Bacteria - 238;
Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 -0.74 0.33 -0.31
62 AT1G60590 Pectin lyase-like superfamily protein -0.73 0.29 -0.32
63 AT1G56340 calreticulin 1a AtCRT1a, calreticulin 1,
calreticulin 1a		 0.73 0.3 -0.31
64 AT2G33740 Nitrogen regulatory PII-like, alpha/beta CUTA 0.73 0.32 -0.3
65 AT5G56580 MAP kinase kinase 6 ARABIDOPSIS NQK1, ARABIDOPSIS
THALIANA MAP KINASE KINASE 6, MAP
kinase kinase 6		 -0.73 0.32 -0.31
66 AT2G44190 Family of unknown function (DUF566) ENDOSPERM DEFECTIVE 1, EMBRYO
DEFECTIVE 3116, QWRF domain
containing 5		 -0.73 0.28 -0.33
67 AT5G65260 RNA-binding (RRM/RBD/RNP motifs) family protein 0.73 0.32 -0.33
68 AT3G56430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, vacuole; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G40800.1); Has 3121 Blast hits to 1477 proteins in
196 species: Archae - 12; Bacteria - 170; Metazoa - 996;
Fungi - 324; Plants - 132; Viruses - 59; Other Eukaryotes -
1428 (source: NCBI BLink).		 0.73 0.32 -0.32
69 AT5G44400 FAD-binding Berberine family protein -0.73 0.33 -0.32
70 AT2G30330 GCN5L1 family protein BLOC subunit 1 0.73 0.33 -0.32
71 AT2G35635 ubiquitin 7 RELATED TO UBIQUITIN 2, ubiquitin
7		 0.73 0.32 -0.31
72 AT5G67270 end binding protein 1C MICROTUBULE END BINDING PROTEIN 1,
ATEB1-HOMOLOG1, end binding
protein 1C		 -0.73 0.33 -0.33
73 AT3G15550 unknown protein; Has 25732 Blast hits to 16979 proteins in
961 species: Archae - 144; Bacteria - 1801; Metazoa -
12681; Fungi - 1868; Plants - 912; Viruses - 94; Other
Eukaryotes - 8232 (source: NCBI BLink).		 -0.73 0.34 -0.28
74 AT2G44080 ARGOS-like ARGOS-like 0.73 0.32 -0.32
75 AT3G06030 NPK1-related protein kinase 3 NPK1-related protein kinase 3,
AtANP3, MAPKKK12, NPK1-related
protein kinase 3		 -0.72 0.31 -0.32
76 AT2G35100 Exostosin family protein ARABINAN DEFICIENT 1 0.72 0.32 -0.31
77 AT1G65520 delta(3), delta(2)-enoyl CoA isomerase 1 ARABIDOPSIS THALIANA DELTA(3),
DELTA(2)-ENOYL COA ISOMERASE 1,
ENOYL-COA HYDRATASE/ISOMERASE C,
delta(3), delta(2)-enoyl CoA
isomerase 1, PEC11		 0.72 0.33 -0.33
78 AT5G13840 FIZZY-related 3 FIZZY-related 3 -0.72 0.31 -0.3
79 AT5G43990 SET-domain containing protein lysine methyltransferase
family protein		 SET DOMAIN PROTEIN 18, SUVR2 -0.72 0.3 -0.3
80 AT5G55340 MBOAT (membrane bound O-acyl transferase) family protein -0.72 0.31 -0.33
81 AT5G15510 TPX2 (targeting protein for Xklp2) protein family -0.72 0.31 -0.33
82 AT5G58710 rotamase CYP 7 rotamase CYP 7 0.72 0.32 -0.33
83 AT3G60380 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: hydroxyproline-rich glycoprotein family protein
(TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in
424 species: Archae - 6; Bacteria - 372; Metazoa - 2603;
Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes -
2147 (source: NCBI BLink).		 -0.72 0.3 -0.33
84 AT4G14200 Pentatricopeptide repeat (PPR) superfamily protein -0.71 0.29 -0.31
85 AT3G51740 inflorescence meristem receptor-like kinase 2 inflorescence meristem
receptor-like kinase 2		 -0.71 0.32 -0.3
86 AT1G69523 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.71 0.33 -0.32
87 AT5G01240 like AUXIN RESISTANT 1 like AUXIN RESISTANT 1 -0.71 0.32 -0.31
88 AT4G08310 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Histone chaperone domain CHZ (InterPro:IPR019098); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins
in 1618 species: Archae - 142; Bacteria - 4400; Metazoa -
24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other
Eukaryotes - 15245 (source: NCBI BLink).		 -0.71 0.32 -0.33
89 AT4G24610 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 12 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast
hits to 264 proteins in 74 species: Archae - 0; Bacteria -
15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0;
Other Eukaryotes - 549 (source: NCBI BLink).		 -0.71 0.32 -0.34
90 AT3G13510 Protein of Unknown Function (DUF239) -0.71 0.31 -0.3
91 AT1G19870 IQ-domain 32 IQ-domain 32 -0.7 0.31 -0.3
92 AT4G27180 kinesin 2 kinesin 2, KINESIN-LIKE PROTEIN IN
ARABIDOPSIS THALIANA B		 -0.7 0.31 -0.31
93 AT3G01550 phosphoenolpyruvate (pep)/phosphate translocator 2 PHOSPHOENOLPYRUVATE
(PEP)/PHOSPHATE TRANSLOCATOR 2,
phosphoenolpyruvate
(pep)/phosphate translocator 2		 -0.7 0.32 -0.3
94 AT4G03270 Cyclin D6;1 Cyclin D6;1 -0.7 0.32 -0.32
95 AT4G34980 subtilisin-like serine protease 2 subtilisin-like serine protease 2 -0.7 0.32 -0.31
96 AT4G26790 GDSL-like Lipase/Acylhydrolase superfamily protein -0.7 0.33 -0.32
97 AT2G38460 iron regulated 1 ARABIDOPSIS THALIANA
IRON-REGULATED PROTEIN 1,
FERROPORTIN 1, iron regulated 1		 -0.7 0.3 -0.32
98 AT3G54350 Forkhead-associated (FHA) domain-containing protein embryo defective 1967 -0.7 0.32 -0.32
99 AT5G25090 early nodulin-like protein 13 AtENODL13, early nodulin-like
protein 13		 -0.69 0.33 -0.31
100 AT3G22520 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast, chloroplast
envelope; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast
hits to 703 proteins in 179 species: Archae - 14; Bacteria
- 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses -
0; Other Eukaryotes - 145 (source: NCBI BLink).		 -0.69 0.32 -0.29
101 AT1G69230 SPIRAL1-like2 SPIRAL1-like2 -0.69 0.33 -0.33
102 AT1G72250 Di-glucose binding protein with Kinesin motor domain -0.69 0.32 -0.31
103 AT1G20030 Pathogenesis-related thaumatin superfamily protein -0.68 0.32 -0.32
104 AT5G48490 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.68 0.33 -0.3
105 AT1G27440 Exostosin family protein ATGUT1, GUT2, IRX10 -0.68 0.28 -0.33
106 AT2G05790 O-Glycosyl hydrolases family 17 protein -0.68 0.31 -0.31
107 AT4G19865 Galactose oxidase/kelch repeat superfamily protein -0.68 0.32 -0.31
108 AT4G18780 cellulose synthase family protein CELLULOSE SYNTHASE 8, CELLULOSE
SYNTHASE 8, IRREGULAR XYLEM 1,
LEAF WILTING 2		 -0.68 0.33 -0.31
109 AT3G57830 Leucine-rich repeat protein kinase family protein -0.68 0.32 -0.31
110 AT3G56370 Leucine-rich repeat protein kinase family protein -0.68 0.29 -0.31
111 AT2G38970 Zinc finger (C3HC4-type RING finger) family protein -0.67 0.31 -0.31
112 AT1G08560 syntaxin of plants 111 ATSYP111, KNOLLE, syntaxin of
plants 111		 -0.67 0.34 -0.3
113 AT5G45850 Protein of unknown function (DUF688) -0.67 0.32 -0.3
114 AT5G47710 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.67 0.29 -0.3
115 AT1G55270 Galactose oxidase/kelch repeat superfamily protein -0.67 0.3 -0.31
116 AT1G01840 unknown protein; Has 23 Blast hits to 23 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.3 -0.3
117 AT1G75090 DNA glycosylase superfamily protein -0.67 0.32 -0.33
118 AT3G28420 Putative membrane lipoprotein -0.67 0.3 -0.32
119 AT3G25710 basic helix-loop-helix 32 ATAIG1, basic helix-loop-helix 32,
TARGET OF MONOPTEROS 5		 -0.67 0.31 -0.33
120 AT1G59540 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ZCF125 -0.67 0.33 -0.33