AT4G12640 : -
Query Information
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AGICode AT4G12640
Description RNA recognition motif (RRM)-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G12640 RNA recognition motif (RRM)-containing protein 1 0.31 -0.34
2 AT3G14790 rhamnose biosynthesis 3 ARABIDOPSIS THALIANA RHAMNOSE
BIOSYNTHESIS 3, rhamnose
biosynthesis 3		 0.76 0.32 -0.32
3 AT5G64270 splicing factor, putative 0.75 0.3 -0.32
4 AT1G22770 gigantea protein (GI) FB, GIGANTEA 0.73 0.32 -0.33
5 AT3G06650 ATP-citrate lyase B-1 ATP-citrate lyase B-1 0.73 0.32 -0.31
6 AT3G12680 floral homeotic protein (HUA1) ENHANCER OF AG-4 1 0.73 0.33 -0.3
7 AT3G17900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 45
Blast hits to 44 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.73 0.31 -0.33
8 AT4G14690 Chlorophyll A-B binding family protein EARLY LIGHT-INDUCIBLE PROTEIN 2 0.72 0.35 -0.32
9 AT1G48120 hydrolases;protein serine/threonine phosphatases 0.72 0.3 -0.32
10 AT5G58760 damaged DNA binding 2 damaged DNA binding 2 0.71 0.32 -0.31
11 AT4G31270 sequence-specific DNA binding transcription factors -0.71 0.33 -0.32
12 AT1G80180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G15400.3); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.71 0.31 -0.28
13 AT1G37130 nitrate reductase 2 ARABIDOPSIS NITRATE REDUCTASE 2,
B29, CHLORATE RESISTANT 3, nitrate
reductase 2, NIA2-1, NITRATE
REDUCTASE, NITRATE REDUCTASE 2		 -0.7 0.31 -0.31
14 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.7 0.31 -0.29
15 AT5G66490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G50900.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.7 0.33 -0.33
16 AT4G03430 pre-mRNA splicing factor-related EMBRYO DEFECTIVE 2770, STABILIZED
1		 0.7 0.33 -0.32
17 AT1G13560 aminoalcoholphosphotransferase 1 aminoalcoholphosphotransferase 1,
ATAAPT1		 0.69 0.31 -0.3
18 AT3G48360 BTB and TAZ domain protein 2 ATBT2, BTB and TAZ domain protein
2		 -0.69 0.32 -0.33
19 AT1G18700 DNAJ heat shock N-terminal domain-containing protein 0.69 0.29 -0.34
20 AT4G31140 O-Glycosyl hydrolases family 17 protein 0.69 0.31 -0.32
21 AT4G28270 RING membrane-anchor 2 ATRMA2, RING membrane-anchor 2 -0.69 0.32 -0.3
22 AT2G20370 Exostosin family protein AtMUR3, KATAMARI 1, MURUS 3 0.69 0.34 -0.31
23 AT5G20180 Ribosomal protein L36 0.68 0.3 -0.3
24 AT5G14570 high affinity nitrate transporter 2.7 high affinity nitrate transporter
2.7, high affinity nitrate
transporter 2.7		 0.67 0.31 -0.34
25 AT4G02610 Aldolase-type TIM barrel family protein -0.67 0.3 -0.32
26 AT5G64170 dentin sialophosphoprotein-related 0.67 0.31 -0.3
27 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.67 0.3 -0.33
28 AT5G54660 HSP20-like chaperones superfamily protein -0.67 0.32 -0.3
29 AT3G47560 alpha/beta-Hydrolases superfamily protein -0.67 0.31 -0.31
30 AT5G02020 Encodes a protein involved in salt tolerance, names SIS
(Salt Induced Serine rich).		 Salt Induced Serine rich -0.67 0.31 -0.31
31 AT4G01330 Protein kinase superfamily protein -0.67 0.32 -0.33
32 AT3G55580 Regulator of chromosome condensation (RCC1) family protein 0.67 0.31 -0.3
33 AT1G70290 trehalose-6-phosphatase synthase S8 ATTPS8, ATTPSC,
trehalose-6-phosphatase synthase
S8		 -0.67 0.32 -0.31
34 AT3G61580 Fatty acid/sphingolipid desaturase AtSLD1, sphingoid LCB desaturase 1 0.67 0.32 -0.33
35 AT1G01510 NAD(P)-binding Rossmann-fold superfamily protein ANGUSTIFOLIA 0.66 0.31 -0.31
36 AT2G46830 circadian clock associated 1 AtCCA1, circadian clock associated
1		 0.66 0.29 -0.32
37 AT2G46220 Uncharacterized conserved protein (DUF2358) -0.66 0.32 -0.33
38 AT4G39780 Integrase-type DNA-binding superfamily protein -0.66 0.31 -0.32
39 AT5G04280 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 AtRZ-1c, RZ-1c 0.66 0.31 -0.3
40 AT5G62600 ARM repeat superfamily protein modifier of snc1-1, 14 0.66 0.32 -0.31
41 AT1G06000 UDP-Glycosyltransferase superfamily protein 0.66 0.32 -0.34
42 AT5G63120 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.66 0.31 -0.33
43 AT5G58600 Plant protein of unknown function (DUF828) POWDERY MILDEW RESISTANT 5,
TRICHOME BIREFRINGENCE-LIKE 44		 0.66 0.3 -0.32
44 AT2G46610 RNA-binding (RRM/RBD/RNP motifs) family protein arginine/serine-rich splicing
factor 31a, arginine/serine-rich
splicing factor 31a		 -0.66 0.31 -0.33
45 AT5G62030 diphthamide synthesis DPH2 family protein 0.65 0.31 -0.34
46 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.65 0.32 -0.32
47 AT2G17980 Sec1/munc18-like (SM) proteins superfamily ATSLY1 0.65 0.3 -0.32
48 AT1G47240 NRAMP metal ion transporter 2 ATNRAMP2, NRAMP metal ion
transporter 2		 0.65 0.3 -0.3
49 AT3G10650 BEST Arabidopsis thaliana protein match is:
nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast
hits to 31782 proteins in 2093 species: Archae - 202;
Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants -
1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI
BLink).		 AtNUP1, NUP1 0.65 0.32 -0.3
50 AT1G11390 Protein kinase superfamily protein 0.65 0.32 -0.33
51 AT1G59580 mitogen-activated protein kinase homolog 2 mitogen-activated protein kinase
homolog 2, mitogen-activated
protein kinase homolog 2		 -0.65 0.3 -0.32
52 AT3G17470 Ca2+-activated RelA/spot homolog ATCRSH, Ca2+-activated RelA/spot
homolog		 -0.65 0.32 -0.31
53 AT2G31380 salt tolerance homologue salt tolerance homologue 0.64 0.3 -0.34
54 AT1G77610 EamA-like transporter family protein 0.64 0.3 -0.3
55 AT1G13020 eukaryotic initiation factor 4B2 eukaryotic initiation factor 4B2 0.64 0.33 -0.31
56 AT2G45740 peroxin 11D peroxin 11D -0.64 0.31 -0.31
57 AT3G04820 Pseudouridine synthase family protein 0.64 0.31 -0.32
58 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.64 0.31 -0.28
59 AT1G06040 B-box zinc finger family protein B-box domain protein 24, SALT
TOLERANCE		 0.64 0.32 -0.31
60 AT4G01510 Arv1-like protein ARV2 -0.64 0.34 -0.31
61 AT3G15353 metallothionein 3 ATMT3, metallothionein 3 -0.64 0.3 -0.32
62 AT1G74750 Pentatricopeptide repeat (PPR) superfamily protein 0.63 0.33 -0.33
63 AT5G15470 galacturonosyltransferase 14 galacturonosyltransferase 14 0.63 0.31 -0.33
64 AT4G30935 WRKY DNA-binding protein 32 ATWRKY32, WRKY DNA-binding protein
32		 0.63 0.32 -0.31
65 AT3G13060 evolutionarily conserved C-terminal region 5 evolutionarily conserved
C-terminal region 5		 0.63 0.31 -0.33
66 AT3G43300 HOPM interactor 7 HOPM interactor 7, BFA-VISUALIZED
ENDOCYTIC TRAFFICKING DEFECTIVE1		 0.63 0.34 -0.31
67 AT3G30710 transposable element gene -0.63 0.32 -0.31
68 AT4G37640 calcium ATPase 2 calcium ATPase 2 0.63 0.33 -0.33
69 AT3G15040 Protein of unknown function, DUF584 0.63 0.33 -0.31
70 AT1G78570 rhamnose biosynthesis 1 ARABIDOPSIS THALIANA RHAMNOSE
BIOSYNTHESIS 1, rhamnose
biosynthesis 1, REPRESSOR OF LRX1
1		 0.63 0.32 -0.3
71 AT5G63380 AMP-dependent synthetase and ligase family protein 0.62 0.31 -0.31
72 AT2G38820 Protein of unknown function (DUF506) -0.62 0.31 -0.31
73 AT2G03310 unknown protein; Has 17 Blast hits to 17 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.33 -0.33
74 AT5G12350 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 0.62 0.3 -0.32
75 AT3G06850 2-oxoacid dehydrogenases acyltransferase family protein BCE2, DARK INDUCIBLE 3, LTA1 -0.62 0.29 -0.33
76 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.62 0.34 -0.33
77 AT5G40470 RNI-like superfamily protein -0.62 0.32 -0.34
78 AT4G14615 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2346
(InterPro:IPR018625); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G52825.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.29 -0.3
79 AT1G54740 Protein of unknown function (DUF3049) -0.62 0.31 -0.33
80 AT5G03230 Protein of unknown function, DUF584 -0.62 0.3 -0.32
81 AT5G40390 Raffinose synthase family protein raffinose synthase 5, seed
imbibition 1-like		 0.62 0.31 -0.3
82 AT2G05270 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.62 0.33 -0.3
83 AT3G06080 Plant protein of unknown function (DUF828) TRICHOME BIREFRINGENCE-LIKE 10 -0.61 0.29 -0.33
84 AT5G47830 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 -0.61 0.32 -0.32
85 AT1G30330 auxin response factor 6 auxin response factor 6 0.61 0.32 -0.33
86 AT3G23900 RNA recognition motif (RRM)-containing protein 0.61 0.36 -0.3
87 AT4G02010 Protein kinase superfamily protein 0.61 0.32 -0.32
88 AT1G34550 Protein of unknown function (DUF616) EMBRYO DEFECTIVE 2756 0.61 0.3 -0.29
89 AT1G09870 histidine acid phosphatase family protein 0.61 0.32 -0.31
90 AT3G18270 cytochrome P450, family 77, subfamily A, polypeptide 5
pseudogene		 cytochrome P450, family 77,
subfamily A, polypeptide 5
pseudogene		 -0.6 0.31 -0.32
91 AT5G03455 Rhodanese/Cell cycle control phosphatase superfamily
protein		 ARSENATE REDUCTASE 2, ARATH;CDC25,
CDC25		 -0.6 0.33 -0.32
92 AT3G15420 Transcription factor TFIIIC, tau55-related protein -0.6 0.32 -0.32
93 AT4G37790 Homeobox-leucine zipper protein family HAT22 -0.6 0.33 -0.33
94 AT4G22753 sterol 4-alpha methyl oxidase 1-3 ATSMO1-3, sterol 4-alpha methyl
oxidase 1-3		 -0.6 0.33 -0.31
95 AT2G35795 Chaperone DnaJ-domain superfamily protein -0.6 0.33 -0.32
96 AT4G19420 Pectinacetylesterase family protein -0.6 0.3 -0.31
97 AT1G12790 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like
(InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.31 -0.31
98 AT2G19250 pseudogene, similar to Magnesium-chelatase subunit chlD,
chloroplast precursor (Mg- protoporphyrin IX chelatase)
(Mg-chelatase subunit D). (Common tobacco), similar to
SP|O24133 Magnesium-chelatase subunit chlD, chloroplast
precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase
subunit D) {Nicotiana tabacum}; blastp match of 78%
identity and 5.0e-07 P-value to SP|O24133|CHLD_TOBAC
Magnesium-chelatase subunit chlD, chloroplast precursor
(Mg- protoporphyrin IX chelatase) (Mg-chelatase subunit D).
(Common tobacco) {Nicotiana tabacum}		 -0.6 0.32 -0.33
99 AT3G19030 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: pyridoxine biosynthetic process, homoserine
biosynthetic process; LOCATED IN: endomembrane system;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G49500.1); Has 22 Blast hits to 22
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.59 0.28 -0.31
100 AT1G68670 myb-like transcription factor family protein -0.59 0.31 -0.32
101 AT1G52240 RHO guanyl-nucleotide exchange factor 11 ATROPGEF11, phytochrome
interacting RopGEF 1, RHO
guanyl-nucleotide exchange factor
11		 -0.59 0.32 -0.3
102 AT3G26220 cytochrome P450, family 71, subfamily B, polypeptide 3 cytochrome P450, family 71,
subfamily B, polypeptide 3		 -0.59 0.3 -0.31
103 AT3G49920 voltage dependent anion channel 5 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 5, voltage
dependent anion channel 5		 -0.59 0.34 -0.3
104 AT5G13090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24270.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.58 0.32 -0.33
105 AT1G55310 SC35-like splicing factor 33 SC35-LIKE SPLICING FACTOR 33,
SC35-like splicing factor 33,
SC35-LIKE SPLICING FACTOR 33,
SC35-like splicing factor 33		 -0.58 0.32 -0.33
106 AT4G35550 WUSCHEL related homeobox 13 ATWOX13, HB-4, WUSCHEL related
homeobox 13		 -0.58 0.32 -0.34
107 AT1G73820 Ssu72-like family protein -0.58 0.31 -0.35
108 AT5G03770 KDO transferase A AtKdtA, KDO transferase A -0.57 0.3 -0.32
109 AT1G71990 fucosyltransferase 13 ARABIDOPSIS FUCOSYLTRANSFERASE 4,
ATFUT13, FT4-M, FUCTC,
fucosyltransferase 13		 -0.57 0.32 -0.33
110 AT1G31820 Amino acid permease family protein -0.57 0.32 -0.31
111 AT5G40460 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits
to 87 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.3 -0.31
112 AT1G54850 HSP20-like chaperones superfamily protein -0.56 0.32 -0.32
113 AT1G41900 transposable element gene -0.56 0.31 -0.31
114 AT5G54250 cyclic nucleotide-gated cation channel 4 cyclic nucleotide-gated cation
channel 4, cyclic nucleotide-gated
cation channel 4, DEFENSE, NO
DEATH 2, HLM1		 -0.56 0.31 -0.29
115 AT1G15010 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits
to 71 proteins in 13 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.36 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
116 C0173 MST_2301.7 - - - 0.78 0.44 -0.46
117 C0215 PR_MST_2527.1 - - - 0.74 0.45 -0.44
118 C0093 Galactinol dihydrate - Galactinol galactosylcyclitol biosynthesis,
stachyose biosynthesis,
ajugose biosynthesis I (galactinol-dependent) 		0.69 0.43 -0.48 C0093