AT4G12060 : -
Query Information
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AGICode AT4G12060
Description Double Clp-N motif protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G12060 Double Clp-N motif protein 1 0.31 -0.31
2 AT4G25370 Double Clp-N motif protein 0.84 0.33 -0.34
3 AT2G38270 CAX-interacting protein 2 GLUTAREDOXIN, CAX-interacting
protein 2		 0.82 0.32 -0.32
4 AT2G20270 Thioredoxin superfamily protein 0.81 0.33 -0.31
5 AT4G11100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.8 0.33 -0.32
6 AT4G08280 Thioredoxin superfamily protein 0.79 0.31 -0.33
7 AT2G15290 translocon at inner membrane of chloroplasts 21 TRANSLOCON AT INNER MEMBRANE OF
CHLOROPLASTS 21, CHLOROPLAST
IMPORT APPARATUS 5, PERMEASE IN
CHLOROPLASTS 1, translocon at
inner membrane of chloroplasts 21		 0.78 0.32 -0.32
8 AT2G42130 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.78 0.3 -0.32
9 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.77 0.34 -0.3
10 AT4G25130 peptide met sulfoxide reductase 4 peptide met sulfoxide reductase 4 0.77 0.34 -0.31
11 AT3G21200 proton gradient regulation 7 proton gradient regulation 7 0.76 0.3 -0.29
12 AT1G57770 FAD/NAD(P)-binding oxidoreductase family protein 0.76 0.29 -0.32
13 AT5G10620 methyltransferases 0.76 0.31 -0.31
14 AT1G61780 postsynaptic protein-related 0.76 0.32 -0.3
15 AT1G11750 CLP protease proteolytic subunit 6 CLP protease proteolytic subunit
6, NUCLEAR-ENCODED CLPP 1, NCLPP6		 0.76 0.33 -0.3
16 AT5G13120 cyclophilin 20-2 ARABIDOPSIS THALIANA CYCLOPHILIN
20-2, cyclophilin 20-2,
Photosynthetic NDH subcomplex L 5		 0.75 0.3 -0.33
17 AT5G45390 CLP protease P4 CLP protease P4, NUCLEAR-ENCODED
CLP PROTEASE P4		 0.75 0.32 -0.34
18 AT3G50790 esterase/lipase/thioesterase family protein 0.75 0.31 -0.31
19 AT2G44870 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 15 growth stages; Has 39 Blast hits to 39 proteins
in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi
- 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.75 0.3 -0.34
20 AT3G08610 unknown protein; Has 40 Blast hits to 40 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.74 0.32 -0.32
21 AT1G36320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits
to 90 proteins in 22 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).		 0.74 0.32 -0.31
22 AT5G17870 plastid-specific 50S ribosomal protein 6 plastid-specific 50S ribosomal
protein 6		 0.74 0.3 -0.32
23 AT3G13490 Lysyl-tRNA synthetase, class II ARABIDOPSIS THALIANA LYSYL-TRNA
SYNTHETASE 2, OVULE ABORTION 5		 0.74 0.3 -0.3
24 AT5G49940 NIFU-like protein 2 CHLOROPLAST-LOCALIZED NIFU-LIKE
PROTEIN 2, NIFU-like protein 2		 0.73 0.32 -0.3
25 AT1G70070 DEAD/DEAH box helicase, putative EMBRYO DEFECTIVE 25, INCREASED
SIZE EXCLUSION LIMIT 2, PIGMENT
DEFECTIVE 317		 0.73 0.31 -0.33
26 AT2G21170 triosephosphate isomerase PLASTID ISOFORM TRIOSE PHOSPHATE
ISOMERASE, triosephosphate
isomerase		 0.73 0.32 -0.32
27 AT1G78620 Protein of unknown function DUF92, transmembrane 0.73 0.32 -0.3
28 AT3G10670 non-intrinsic ABC protein 7 ATP-binding cassette I6,
non-intrinsic ABC protein 7,
non-intrinsic ABC protein 7		 0.73 0.32 -0.33
29 AT1G27385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF493 (InterPro:IPR007454);
Has 76 Blast hits to 76 proteins in 23 species: Archae - 0;
Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.73 0.32 -0.33
30 AT4G32590 2Fe-2S ferredoxin-like superfamily protein 0.72 0.33 -0.32
31 AT4G22310 Uncharacterised protein family (UPF0041) 0.72 0.33 -0.33
32 AT1G32500 non-intrinsic ABC protein 6 ATP-binding cassette I7,
non-intrinsic ABC protein 6,
non-intrinsic ABC protein 6		 0.72 0.3 -0.35
33 AT5G28050 Cytidine/deoxycytidylate deaminase family protein 0.72 0.31 -0.32
34 AT1G62850 Class I peptide chain release factor 0.71 0.33 -0.3
35 AT5G06580 FAD-linked oxidases family protein 0.71 0.32 -0.3
36 AT5G40190 RNA ligase/cyclic nucleotide phosphodiesterase family
protein		 0.71 0.31 -0.31
37 AT1G10670 ATP-citrate lyase A-1 ATP-citrate lyase A-1 0.71 0.32 -0.32
38 AT4G21860 methionine sulfoxide reductase B 2 methionine sulfoxide reductase B 2 0.71 0.32 -0.31
39 AT2G19790 SNARE-like superfamily protein 0.71 0.32 -0.32
40 AT4G33350 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-IV,
translocon at the inner envelope
membrane of chloroplasts 22-IV		 0.7 0.33 -0.31
41 AT2G28430 unknown protein; Has 28 Blast hits to 28 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.7 0.33 -0.29
42 AT1G63310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits
to 77 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.7 0.31 -0.31
43 AT5G26270 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.7 0.31 -0.3
44 AT2G44620 mitochondrial acyl carrier protein 1 mitochondrial acyl carrier protein
1, MITOCHONDRIAL ACYL CARRIER
PROTEIN 1		 0.7 0.31 -0.31
45 AT1G63170 Zinc finger, C3HC4 type (RING finger) family protein 0.7 0.34 -0.33
46 AT5G08540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, chloroplast
envelope; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.7 0.3 -0.31
47 AT4G05000 Vacuolar protein sorting-associated protein VPS28 family
protein		 vacuolar protein
sorting-associated protein 28
homolog 1, VPS28-2		 0.7 0.31 -0.33
48 AT1G54110 Membrane fusion protein Use1 0.7 0.31 -0.31
49 AT5G51820 phosphoglucomutase ARABIDOPSIS THALIANA
PHOSPHOGLUCOMUTASE,
phosphoglucomutase, PGM1,
STARCH-FREE 1		 0.7 0.32 -0.32
50 AT4G33520 P-type ATP-ase 1 Arabidopsis thaliana heavy metal
ATPase 6, HEAVY METAL ATPASE 6,
P-type ATP-ase 1		 0.69 0.32 -0.32
51 AT3G53710 ARF-GAP domain 6 ARF-GAP domain 6 0.69 0.31 -0.32
52 AT4G22580 Exostosin family protein 0.69 0.3 -0.33
53 AT5G39790 5'-AMP-activated protein kinase-related 0.69 0.3 -0.3
54 AT1G79970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: Protein of unknown function (DUF581)
(TAIR:AT2G25690.2); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.69 0.31 -0.33
55 AT5G54540 Uncharacterised conserved protein (UCP012943) 0.69 0.31 -0.32
56 AT1G08490 chloroplastic NIFS-like cysteine desulfurase ATCPNIFS, ATNFS2, ATSUFS,
chloroplastic NIFS-like cysteine
desulfurase, SUFS		 0.69 0.29 -0.32
57 AT1G02560 nuclear encoded CLP protease 5 nuclear encoded CLP protease 5,
NUCLEAR-ENCODED CLPP 1, NUCLEAR
CLPP 5		 0.69 0.32 -0.33
58 AT4G14910 HISTIDINE BIOSYNTHESIS 5B HISTIDINE BIOSYNTHESIS 5B 0.68 0.32 -0.3
59 AT2G37920 copper ion transmembrane transporters embryo defective 1513 0.68 0.32 -0.32
60 AT4G01940 NFU domain protein 1 AtCNFU1, NFU domain protein 1 0.68 0.31 -0.33
61 AT5G42390 Insulinase (Peptidase family M16) family protein stromal processing peptidase 0.68 0.31 -0.32
62 AT2G19940 oxidoreductases, acting on the aldehyde or oxo group of
donors, NAD or NADP as acceptor;copper ion binding		 0.68 0.32 -0.31
63 AT5G16660 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, membrane,
chloroplast envelope; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.68 0.31 -0.3
64 AT5G60860 RAB GTPase homolog A1F RAB GTPase homolog A1F, RAB GTPase
homolog A1F		 0.67 0.32 -0.31
65 AT3G52230 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast outer membrane, chloroplast thylakoid membrane,
chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; Has 29
Blast hits to 29 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.31 -0.3
66 AT3G54690 Sugar isomerase (SIS) family protein SETH3 0.67 0.32 -0.31
67 AT1G18600 RHOMBOID-like protein 12 ARABIDOPSIS RHOMBOID-LIKE PROTEIN
12, RHOMBOID-like protein 12		 0.67 0.31 -0.31
68 AT4G25550 Cleavage/polyadenylation specificity factor, 25kDa subunit 0.67 0.3 -0.31
69 AT5G64480 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.67 0.32 -0.31
70 AT1G67280 Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily protein		 0.67 0.33 -0.3
71 AT1G61810 beta-glucosidase 45 beta-glucosidase 45 -0.66 0.32 -0.31
72 AT1G45170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits
to 62 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.66 0.29 -0.32
73 AT5G47870 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 radiation sensitive 51-2, RAD52-2B 0.66 0.31 -0.29
74 AT3G08890 Protein of unknown function, DUF538 0.66 0.31 -0.31
75 AT5G05130 DNA/RNA helicase protein -0.66 0.33 -0.33
76 AT4G23840 Leucine-rich repeat (LRR) family protein -0.66 0.31 -0.32
77 AT2G36250 Tubulin/FtsZ family protein ATFTSZ2-1, FTSZ2-1 0.66 0.31 -0.32
78 AT2G44050 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase /
lumazine synthase / riboflavin synthase		 COI1 SUPPRESSOR1, coronatine
insensitive1 suppressor		 0.66 0.3 -0.31
79 AT2G30320 Pseudouridine synthase family protein 0.66 0.32 -0.31
80 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.66 0.31 -0.3
81 AT5G65210 bZIP transcription factor family protein TGA1 -0.65 0.31 -0.31
82 AT3G02900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria -
4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.65 0.29 -0.31
83 AT3G56840 FAD-dependent oxidoreductase family protein 0.65 0.29 -0.33
84 AT3G26550 Cysteine/Histidine-rich C1 domain family protein -0.65 0.34 -0.29
85 AT3G10850 Metallo-hydrolase/oxidoreductase superfamily protein GLYOXALASE 2-2, GLY2 0.65 0.33 -0.31
86 AT3G21310 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.65 0.31 -0.31
87 AT2G15110 Protein of unknown function, DUF601 0.65 0.29 -0.32
88 AT5G23570 XS domain-containing protein / XS zinc finger
domain-containing protein-related		 SUPPRESSOR OF GENE SILENCING 3,
SUPPRESSOR OF GENE SILENCING 3		 -0.65 0.29 -0.32
89 AT5G49820 Protein of unknown function, DUF647 ROOT UV-B SENSITIVE 6 0.65 0.33 -0.34
90 AT4G14160 Sec23/Sec24 protein transport family protein 0.65 0.32 -0.32
91 AT1G03840 C2H2 and C2HC zinc fingers superfamily protein Magpie -0.65 0.32 -0.33
92 AT4G13520 small acidic protein 1 small acidic protein 1 0.65 0.31 -0.34
93 AT1G05760 Mannose-binding lectin superfamily protein restricted tev movement 1 0.65 0.31 -0.3
94 AT4G20760 NAD(P)-binding Rossmann-fold superfamily protein 0.65 0.3 -0.32
95 AT2G46200 unknown protein; Has 2968 Blast hits to 2381 proteins in
310 species: Archae - 16; Bacteria - 188; Metazoa - 1070;
Fungi - 227; Plants - 145; Viruses - 4; Other Eukaryotes -
1318 (source: NCBI BLink).		 -0.64 0.3 -0.33
96 AT5G14080 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.3 -0.29
97 AT4G36380 Cytochrome P450 superfamily protein ROTUNDIFOLIA 3 -0.64 0.31 -0.29
98 AT3G62270 HCO3- transporter family -0.64 0.33 -0.31
99 AT5G42690 Protein of unknown function, DUF547 -0.63 0.29 -0.31
100 AT1G21740 Protein of unknown function (DUF630 and DUF632) -0.63 0.31 -0.3
101 AT1G13970 Protein of unknown function (DUF1336) -0.62 0.32 -0.3
102 AT1G03620 ELMO/CED-12 family protein -0.62 0.3 -0.33
103 AT1G44160 HSP40/DnaJ peptide-binding protein -0.62 0.31 -0.36
104 AT2G47260 WRKY DNA-binding protein 23 WRKY DNA-BINDING PROTEIN 23, WRKY
DNA-binding protein 23		 -0.62 0.32 -0.32
105 AT2G37360 ABC-2 type transporter family protein ATP-binding cassette G2 -0.62 0.31 -0.32
106 AT5G39820 NAC domain containing protein 94 NAC domain containing protein 94,
NAC domain containing protein 94		 -0.61 0.35 -0.29
107 AT1G64480 calcineurin B-like protein 8 calcineurin B-like protein 8 -0.61 0.33 -0.29
108 AT2G40900 nodulin MtN21 /EamA-like transporter family protein -0.6 0.32 -0.33
109 AT1G73780 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.6 0.33 -0.33
110 AT4G28040 nodulin MtN21 /EamA-like transporter family protein -0.6 0.34 -0.3
111 AT5G05160 Leucine-rich repeat protein kinase family protein REDUCED IN LATERAL GROWTH1 -0.59 0.31 -0.32
112 AT5G09530 hydroxyproline-rich glycoprotein family protein Pro-Glu-Leu|Ile|Val-Pro-Lys 1,
proline-rich protein 10		 -0.59 0.33 -0.31
113 AT2G32300 uclacyanin 1 uclacyanin 1 -0.59 0.3 -0.3
114 AT1G64100 pentatricopeptide (PPR) repeat-containing protein -0.58 0.32 -0.35
115 AT3G45960 expansin-like A3 expansin-like A3, ATEXPL3, ATHEXP
BETA 2.3, expansin-like A3, EXPL3		 -0.58 0.33 -0.33
116 AT2G35170 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 -0.57 0.31 -0.33
117 AT4G23496 SPIRAL1-like5 SPIRAL1-like5 -0.57 0.34 -0.34
118 AT5G51680 hydroxyproline-rich glycoprotein family protein -0.56 0.31 -0.32
119 AT3G22830 heat shock transcription factor A6B ARABIDOPSIS THALIANA HEAT SHOCK
TRANSCRIPTION FACTOR A6B, heat
shock transcription factor A6B		 -0.56 0.29 -0.31
120 AT1G52500 MUTM homolog-1 A. THALIANA
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 1,
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 2, MUTM homolog-1,
ATMMH-2, FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 1,
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 2, MUTM homolog-1,
MMH-2		 -0.55 0.31 -0.31
121 AT1G49000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G18560.1); Has
105 Blast hits to 105 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.31 -0.32
122 AT5G51420 long-chain-alcohol O-fatty-acyltransferase family protein /
wax synthase family protein		 -0.54 0.32 -0.3
123 AT1G72220 RING/U-box superfamily protein -0.54 0.31 -0.3
124 AT1G71690 Protein of unknown function (DUF579) -0.54 0.3 -0.3
125 AT4G25800 Calmodulin-binding protein -0.54 0.3 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
126 C0183 MST_3033.1 - - - 0.8 0.43 -0.45