AT4G11175 : -
Query Information
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AGICode AT4G11175
Description Nucleic acid-binding, OB-fold-like protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G11175 Nucleic acid-binding, OB-fold-like protein 1 0.32 -0.32
2 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.96 0.31 -0.31
3 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.96 0.31 -0.3
4 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.95 0.31 -0.3
5 AT5G65220 Ribosomal L29 family protein 0.95 0.33 -0.31
6 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.95 0.31 -0.31
7 AT2G33450 Ribosomal L28 family 0.94 0.31 -0.33
8 AT1G36390 Co-chaperone GrpE family protein 0.94 0.31 -0.31
9 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.94 0.32 -0.32
10 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.94 0.31 -0.3
11 AT1G14270 CAAX amino terminal protease family protein 0.94 0.32 -0.32
12 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.94 0.32 -0.32
13 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.93 0.31 -0.34
14 AT2G45270 glycoprotease 1 glycoprotease 1 0.93 0.29 -0.31
15 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.93 0.33 -0.31
16 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.93 0.32 -0.32
17 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.93 0.31 -0.35
18 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.93 0.33 -0.31
19 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.93 0.32 -0.32
20 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.93 0.3 -0.31
21 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.93 0.31 -0.31
22 AT1G53520 Chalcone-flavanone isomerase family protein 0.93 0.32 -0.31
23 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.93 0.3 -0.32
24 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.93 0.31 -0.32
25 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.93 0.32 -0.3
26 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.93 0.32 -0.31
27 AT1G76450 Photosystem II reaction center PsbP family protein 0.92 0.32 -0.32
28 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.92 0.32 -0.3
29 AT3G54210 Ribosomal protein L17 family protein 0.92 0.31 -0.32
30 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.92 0.31 -0.32
31 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.92 0.34 -0.31
32 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.92 0.3 -0.31
33 AT3G12930 Lojap-related protein 0.92 0.31 -0.29
34 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.92 0.34 -0.31
35 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.92 0.32 -0.31
36 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.92 0.32 -0.35
37 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.92 0.34 -0.33
38 AT4G17560 Ribosomal protein L19 family protein 0.92 0.33 -0.32
39 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.92 0.31 -0.28
40 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.92 0.32 -0.31
41 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.92 0.32 -0.32
42 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.92 0.32 -0.33
43 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.31 -0.31
44 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.92 0.3 -0.33
45 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.92 0.31 -0.3
46 AT3G13120 Ribosomal protein S10p/S20e family protein 0.92 0.32 -0.32
47 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.92 0.31 -0.31
48 AT2G43030 Ribosomal protein L3 family protein 0.92 0.3 -0.32
49 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.92 0.31 -0.33
50 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.92 0.3 -0.3
51 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.92 0.33 -0.31
52 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.3 -0.28
53 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.92 0.32 -0.33
54 AT3G55040 glutathione transferase lambda 2 glutathione transferase lambda 2 0.91 0.32 -0.33
55 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.91 0.32 -0.34
56 AT5G47190 Ribosomal protein L19 family protein 0.91 0.3 -0.31
57 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.91 0.29 -0.33
58 AT1G20810 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.91 0.31 -0.31
59 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.91 0.31 -0.3
60 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.91 0.31 -0.32
61 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.91 0.32 -0.32
62 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.91 0.3 -0.33
63 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.91 0.32 -0.32
64 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.91 0.31 -0.32
65 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.91 0.3 -0.31
66 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.91 0.32 -0.32
67 AT4G37510 Ribonuclease III family protein 0.91 0.33 -0.34
68 AT3G20230 Ribosomal L18p/L5e family protein 0.91 0.3 -0.29
69 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.91 0.31 -0.31
70 AT1G29070 Ribosomal protein L34 0.91 0.3 -0.33
71 AT2G42220 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.32 -0.31
72 AT2G18710 SECY homolog 1 SECY homolog 1 0.91 0.3 -0.31
73 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.91 0.3 -0.32
74 AT4G24750 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.35 -0.31
75 AT5G46420 16S rRNA processing protein RimM family 0.91 0.31 -0.32
76 AT3G28460 methyltransferases 0.9 0.32 -0.32
77 AT3G01480 cyclophilin 38 ARABIDOPSIS CYCLOPHILIN 38,
cyclophilin 38		 0.9 0.32 -0.33
78 AT3G18890 NAD(P)-binding Rossmann-fold superfamily protein translocon at the inner envelope
membrane of chloroplasts 62,
translocon at the inner envelope
membrane of chloroplasts 62		 0.9 0.36 -0.32
79 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.9 0.32 -0.31
80 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.9 0.3 -0.3
81 AT4G21280 photosystem II subunit QA PHOTOSYSTEM II SUBUNIT Q,
PHOTOSYSTEM II SUBUNIT Q-1,
photosystem II subunit QA		 0.9 0.29 -0.33
82 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.9 0.31 -0.32
83 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.9 0.3 -0.31
84 AT4G26370 antitermination NusB domain-containing protein 0.9 0.31 -0.33
85 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.9 0.33 -0.33
86 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.9 0.32 -0.3
87 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.9 0.33 -0.32
88 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.9 0.32 -0.33
89 AT2G24060 Translation initiation factor 3 protein 0.9 0.32 -0.31
90 AT5G55220 trigger factor type chaperone family protein 0.9 0.33 -0.31
91 AT2G24090 Ribosomal protein L35 0.9 0.32 -0.3
92 AT2G37660 NAD(P)-binding Rossmann-fold superfamily protein 0.9 0.3 -0.31
93 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.9 0.33 -0.31
94 AT5G54600 Translation protein SH3-like family protein 0.9 0.33 -0.32
95 AT2G21280 NAD(P)-binding Rossmann-fold superfamily protein ATSULA, GIANT CHLOROPLAST 1, SULA 0.9 0.33 -0.33
96 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.9 0.29 -0.31
97 AT4G39970 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.89 0.34 -0.33
98 AT3G60750 Transketolase 0.89 0.3 -0.3
99 AT5G06290 2-cysteine peroxiredoxin B 2-cysteine peroxiredoxin B, 2-CYS
PEROXIREDOXIN B		 0.89 0.31 -0.3
100 AT4G17740 Peptidase S41 family protein 0.89 0.32 -0.29
101 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.89 0.3 -0.32
102 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.89 0.31 -0.31
103 AT3G25660 Amidase family protein 0.89 0.31 -0.33
104 AT4G30950 fatty acid desaturase 6 fatty acid desaturase 6, FATTY
ACID DESATURASE C, STEAROYL
DESATURASE DEFICIENCY 4		 0.89 0.31 -0.32
105 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.89 0.31 -0.32
106 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.89 0.29 -0.33
107 AT5G28750 Bacterial sec-independent translocation protein mttA/Hcf106 0.89 0.32 -0.31
108 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.89 0.31 -0.29
109 AT3G23700 Nucleic acid-binding proteins superfamily 0.89 0.32 -0.33
110 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.89 0.31 -0.35
111 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.89 0.31 -0.35
112 AT2G44650 chloroplast chaperonin 10 chloroplast chaperonin 10,
CHLOROPLAST CHAPERONIN 10		 0.89 0.32 -0.32
113 AT3G29185 Domain of unknown function (DUF3598) 0.89 0.32 -0.32
114 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.89 0.31 -0.32
115 AT3G62030 rotamase CYP 4 cyclophilin 20-3, rotamase CYP 4 0.89 0.33 -0.32
116 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.89 0.34 -0.29
117 AT3G12685 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.89 0.31 -0.33
118 AT1G60230 Radical SAM superfamily protein 0.89 0.31 -0.32
119 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.89 0.32 -0.3
120 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.89 0.33 -0.31
121 AT4G34190 stress enhanced protein 1 stress enhanced protein 1 0.89 0.32 -0.32
122 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.89 0.31 -0.31
123 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.89 0.32 -0.32
124 AT1G51100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26
Blast hits to 26 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.89 0.32 -0.32
125 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.89 0.34 -0.32
126 AT5G52970 thylakoid lumen 15.0 kDa protein 0.89 0.32 -0.32
127 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.3 -0.32
128 AT3G51140 Protein of unknown function (DUF3353) 0.89 0.3 -0.32
129 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.89 0.31 -0.3
130 AT5G06750 Protein phosphatase 2C family protein -0.77 0.3 -0.32
131 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.75 0.33 -0.3
132 AT5G20960 aldehyde oxidase 1 aldehyde oxidase 1, aldehyde
oxidase 1, aldehyde oxidase alpha,
ARABIDOPSIS THALIANA ALDEHYDE
OXIDASE 1, ATAO, Arabidopsis
thaliana aldehyde oxidase 1		 -0.75 0.31 -0.34
133 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.74 0.31 -0.32
134 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.73 0.32 -0.32
135 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.73 0.3 -0.31
136 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.7 0.34 -0.32
137 AT2G30130 Lateral organ boundaries (LOB) domain family protein ASL5, LBD12, PEACOCK 1 -0.68 0.32 -0.32
138 AT5G38030 MATE efflux family protein -0.67 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
139 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.78 0.43 -0.42 C0051