AT4G11130 : RNA-dependent RNA polymerase 2
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AGICode AT4G11130
Description RNA-dependent RNA polymerase 2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G11130 RNA-dependent RNA polymerase 2 RNA-dependent RNA polymerase 2,
SILENCING MOVEMENT DEFICIENT 1
1 0.32 -0.3
2 AT1G09920 TRAF-type zinc finger-related -0.79 0.31 -0.31
3 AT1G14000 VH1-interacting kinase VH1-interacting kinase -0.77 0.3 -0.32
4 AT1G74640 alpha/beta-Hydrolases superfamily protein -0.76 0.34 -0.32
5 AT2G35700 ERF family protein 38 ERF FAMILY PROTEIN 38, ERF family
protein 38
-0.76 0.3 -0.31
6 AT5G61210 soluble N-ethylmaleimide-sensitive factor adaptor protein
33
ATSNAP33, ATSNAP33B, soluble
N-ethylmaleimide-sensitive factor
adaptor protein 33, SNP33
-0.75 0.32 -0.31
7 AT3G17410 Protein kinase superfamily protein -0.75 0.34 -0.33
8 AT4G31170 Protein kinase superfamily protein -0.75 0.3 -0.32
9 AT3G19010 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
-0.74 0.32 -0.31
10 AT4G32930 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF866, eukaryotic (InterPro:IPR008584);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).
-0.74 0.31 -0.31
11 AT3G07720 Galactose oxidase/kelch repeat superfamily protein -0.74 0.31 -0.3
12 AT3G57700 Protein kinase superfamily protein -0.74 0.3 -0.32
13 AT5G41350 RING/U-box superfamily protein -0.73 0.31 -0.32
14 AT5G62460 RING/FYVE/PHD zinc finger superfamily protein -0.73 0.31 -0.32
15 AT3G22790 Kinase interacting (KIP1-like) family protein 0.73 0.33 -0.31
16 AT1G59710 Protein of unknown function (DUF569) -0.72 0.3 -0.31
17 AT5G06940 Leucine-rich repeat receptor-like protein kinase family
protein
0.72 0.34 -0.31
18 AT2G36680 Modifier of rudimentary (Mod(r)) protein -0.72 0.3 -0.32
19 AT1G03950 vacuolar protein sorting-associated protein 2.3 vacuolar protein
sorting-associated protein 2.3
-0.72 0.34 -0.31
20 AT5G59300 ubiquitin carrier protein 7 ARABIDOPSIS THALIANA UBIQUITIN
CARRIER PROTEIN 7, ubiquitin
carrier protein 7
-0.72 0.31 -0.31
21 AT4G03410 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein -0.72 0.32 -0.31
22 AT5G54670 kinesin 3 kinesin 3, KINESIN-LIKE PROTEIN IN
ARABIDOPSIS THALIANA C
0.72 0.32 -0.3
23 AT3G23280 XB3 ortholog 5 in Arabidopsis thaliana XB3 ortholog 5 in Arabidopsis
thaliana
-0.71 0.32 -0.31
24 AT2G23940 Protein of unknown function (DUF788) -0.71 0.31 -0.3
25 AT1G54150 E3 Ubiquitin ligase family protein -0.71 0.31 -0.32
26 AT1G35380 transposable element gene -0.71 0.31 -0.34
27 AT1G10500 chloroplast-localized ISCA-like protein chloroplast-localized ISCA-like
protein, chloroplast-localized
ISCA-like protein
-0.71 0.33 -0.31
28 AT5G19030 RNA-binding (RRM/RBD/RNP motifs) family protein -0.71 0.33 -0.35
29 AT1G63640 P-loop nucleoside triphosphate hydrolases superfamily
protein with CH (Calponin Homology) domain
0.71 0.29 -0.3
30 AT4G13010 Oxidoreductase, zinc-binding dehydrogenase family protein -0.71 0.33 -0.33
31 AT3G09085 Protein of unknown function (DUF962) -0.7 0.34 -0.33
32 AT3G55140 Pectin lyase-like superfamily protein -0.7 0.32 -0.29
33 AT4G17170 RAB GTPase homolog B1C AT-RAB2, ARABIDOPSIS RAB GTPASE
HOMOLOG B1B, ATRAB2A, ATRABB1C,
RAB GTPASE HOMOLOG B1B, RAB2A, RAB
GTPase homolog B1C
-0.7 0.31 -0.33
34 AT4G26760 microtubule-associated protein 65-2 microtubule-associated protein
65-2
0.7 0.3 -0.32
35 AT5G23660 homolog of Medicago truncatula MTN3 AtSWEET12, homolog of Medicago
truncatula MTN3, SWEET12
-0.7 0.31 -0.32
36 AT2G23080 Protein kinase superfamily protein casein kinase II, alpha chain 3 -0.7 0.31 -0.31
37 AT2G41310 response regulator 3 RESPONSE REGULATOR 8, response
regulator 3, response regulator 3
0.69 0.31 -0.32
38 AT3G17880 tetraticopeptide domain-containing thioredoxin ARABIDOPSIS THALIANA
HSP70-INTERACTING PROTEIN 2,
tetraticopeptide domain-containing
thioredoxin, HSC-70 INTERACTING
PROTEIN, tetraticopeptide
domain-containing thioredoxin
-0.69 0.31 -0.31
39 AT4G02340 alpha/beta-Hydrolases superfamily protein -0.69 0.32 -0.31
40 AT1G55200 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain
0.69 0.31 -0.31
41 AT3G46460 ubiquitin-conjugating enzyme 13 ubiquitin-conjugating enzyme 13 -0.69 0.33 -0.32
42 AT5G37070 Protein of unknown function, DUF538 -0.69 0.32 -0.31
43 AT3G51920 calmodulin 9 ATCML9, calmodulin 9, CALMODULIN
LIKE PROTEIN 9
-0.69 0.33 -0.33
44 AT4G37120 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 2 -0.69 0.3 -0.3
45 AT5G53000 2A phosphatase associated protein of 46 kD 2A phosphatase associated protein
of 46 kD
-0.69 0.32 -0.29
46 AT5G09230 sirtuin 2 SIRTUIN 2, sirtuin 2 -0.69 0.3 -0.3
47 AT2G34680 Outer arm dynein light chain 1 protein AUXIN-INDUCED IN ROOT CULTURES 9 0.69 0.3 -0.3
48 AT4G39730 Lipase/lipooxygenase, PLAT/LH2 family protein -0.69 0.34 -0.29
49 AT2G25820 Integrase-type DNA-binding superfamily protein ethylene and salt inducible 2 -0.69 0.3 -0.3
50 AT5G13160 Protein kinase superfamily protein avrPphB susceptible 1 -0.69 0.3 -0.31
51 AT3G58600 Adaptin ear-binding coat-associated protein 1 NECAP-1 -0.69 0.3 -0.32
52 AT1G69980 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; Has 30 Blast hits to 30 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
-0.69 0.33 -0.31
53 AT1G48210 Protein kinase superfamily protein -0.69 0.3 -0.33
54 AT4G10970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G23910.2); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).
-0.69 0.3 -0.32
55 AT3G16490 IQ-domain 26 IQ-domain 26 0.69 0.34 -0.32
56 AT2G40070 BEST Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).
0.69 0.33 -0.31
57 AT3G18250 Putative membrane lipoprotein -0.69 0.32 -0.33
58 AT2G46600 Calcium-binding EF-hand family protein -0.68 0.32 -0.32
59 AT5G63870 serine/threonine phosphatase 7 ATPP7, serine/threonine
phosphatase 7
-0.68 0.31 -0.3
60 AT1G78410 VQ motif-containing protein -0.68 0.31 -0.31
61 AT3G43920 dicer-like 3 DICER-LIKE 3, dicer-like 3 0.68 0.31 -0.31
62 AT5G24500 unknown protein; Has 133 Blast hits to 129 proteins in 40
species: Archae - 2; Bacteria - 0; Metazoa - 60; Fungi - 5;
Plants - 29; Viruses - 0; Other Eukaryotes - 37 (source:
NCBI BLink).
-0.68 0.3 -0.32
63 AT3G13410 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).
-0.68 0.31 -0.3
64 AT2G20000 CDC27 family protein CDC27b, HOBBIT 0.68 0.3 -0.32
65 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1
0.68 0.34 -0.32
66 AT3G13440 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
0.68 0.32 -0.32
67 AT1G55450 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
-0.67 0.28 -0.3
68 AT4G27250 NAD(P)-binding Rossmann-fold superfamily protein 0.67 0.33 -0.31
69 AT2G22425 Microsomal signal peptidase 12 kDa subunit (SPC12) -0.67 0.33 -0.32
70 AT5G55300 DNA topoisomerase I alpha MGOUN 1, TOPOISOMERASE 1, DNA
topoisomerase I alpha
0.67 0.33 -0.32
71 AT3G02520 general regulatory factor 7 GF14 NU, general regulatory factor
7
-0.67 0.31 -0.31
72 AT2G41550 Rho termination factor 0.67 0.31 -0.3
73 AT5G19600 sulfate transporter 3;5 sulfate transporter 3;5 0.67 0.33 -0.32
74 AT5G48540 receptor-like protein kinase-related family protein -0.67 0.32 -0.31
75 AT2G33530 serine carboxypeptidase-like 46 serine carboxypeptidase-like 46 -0.67 0.32 -0.33
76 AT3G24350 syntaxin of plants 32 ATSYP32, syntaxin of plants 32 -0.67 0.31 -0.29
77 AT3G57090 Tetratricopeptide repeat (TPR)-like superfamily protein BIGYIN, FISSION 1A -0.66 0.32 -0.3
78 AT2G38000 chaperone protein dnaJ-related -0.66 0.32 -0.33
79 AT1G69570 Dof-type zinc finger DNA-binding family protein -0.66 0.32 -0.31
80 AT1G31650 RHO guanyl-nucleotide exchange factor 14 ATROPGEF14, RHO guanyl-nucleotide
exchange factor 14
0.66 0.32 -0.31
81 AT4G27120 CONTAINS InterPro DOMAIN/s: DDRGK domain
(InterPro:IPR019153); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).
-0.65 0.32 -0.3
82 AT2G44830 Protein kinase superfamily protein 0.65 0.32 -0.32
83 AT1G17160 pfkB-like carbohydrate kinase family protein -0.65 0.31 -0.31
84 AT4G29810 MAP kinase kinase 2 MAP kinase kinase 2, MAP KINASE
KINASE 1, MAP kinase kinase 2
-0.65 0.31 -0.34
85 AT5G58070 temperature-induced lipocalin TEMPERATURE-INDUCED LIPOCALIN,
temperature-induced lipocalin
-0.65 0.33 -0.3
86 AT2G19560 proteasome family protein AtTHP1, ENHANCED ETHYLENE RESPONSE
5, ectopic expression of seed
storage proteins 1
-0.65 0.32 -0.32
87 AT2G02620 Cysteine/Histidine-rich C1 domain family protein -0.65 0.33 -0.3
88 AT5G53330 Ubiquitin-associated/translation elongation factor EF1B
protein
-0.65 0.31 -0.3
89 AT1G65020 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endoplasmic
reticulum, plasma membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast
hits to 69 proteins in 27 species: Archae - 0; Bacteria -
18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).
-0.65 0.31 -0.3
90 AT4G00340 receptor-like protein kinase 4 receptor-like protein kinase 4 0.65 0.33 -0.32
91 AT3G58770 unknown protein; Has 38 Blast hits to 36 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).
0.65 0.31 -0.32
92 AT3G44050 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
0.65 0.32 -0.31
93 AT1G21740 Protein of unknown function (DUF630 and DUF632) 0.65 0.33 -0.31
94 AT4G27650 Eukaryotic release factor 1 (eRF1) family protein PELOTA -0.65 0.32 -0.33
95 AT2G33220 GRIM-19 protein -0.65 0.31 -0.34
96 AT1G03250 unknown protein; Has 89 Blast hits to 89 proteins in 31
species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).
-0.65 0.31 -0.31
97 AT1G23260 MMS ZWEI homologue 1 MMS ZWEI homologue 1, UBIQUITIN E2
VARIANT 1A
-0.65 0.31 -0.31
98 AT3G22060 Receptor-like protein kinase-related family protein -0.65 0.29 -0.31
99 AT3G22845 emp24/gp25L/p24 family/GOLD family protein -0.65 0.3 -0.32
100 AT3G22260 Cysteine proteinases superfamily protein -0.65 0.31 -0.3
101 AT1G79510 Uncharacterized conserved protein (DUF2358) -0.64 0.31 -0.31
102 AT5G64180 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).
-0.64 0.3 -0.3
103 AT4G10790 UBX domain-containing protein -0.64 0.32 -0.3
104 AT1G12840 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit
/ vacuolar proton pump C subunit (DET3)
ARABIDOPSIS THALIANA VACUOLAR ATP
SYNTHASE SUBUNIT C, DE-ETIOLATED 3
-0.64 0.3 -0.31
105 AT1G64450 Glycine-rich protein family 0.64 0.33 -0.32
106 AT3G13000 Protein of unknown function, DUF547 0.64 0.33 -0.33
107 AT1G71010 FORMS APLOID AND BINUCLEATE CELLS 1C FORMS APLOID AND BINUCLEATE CELLS
1C
0.64 0.32 -0.3
108 AT2G48030 DNAse I-like superfamily protein -0.64 0.3 -0.31
109 AT5G26850 Uncharacterized protein 0.64 0.31 -0.31
110 AT1G79220 Mitochondrial transcription termination factor family
protein
0.64 0.3 -0.33
111 AT1G22750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1475 (InterPro:IPR009943);
Has 185 Blast hits to 155 proteins in 21 species: Archae -
0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 64;
Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
-0.64 0.32 -0.3
112 AT4G10330 glycine-rich protein -0.64 0.29 -0.35
113 AT2G16090 RING/U-box superfamily protein ARIADNE 2, ARABIDOPSIS ARIADNE 2 0.64 0.31 -0.31
114 AT2G44490 Glycosyl hydrolase superfamily protein BETA GLUCOSIDASE 26, PENETRATION 2 -0.64 0.32 -0.3
115 AT1G48850 chorismate synthase, putative /
5-enolpyruvylshikimate-3-phosphate phospholyase, putative
embryo defective 1144 -0.64 0.3 -0.31
116 AT2G31570 glutathione peroxidase 2 glutathione peroxidase 2,
glutathione peroxidase 2
-0.64 0.33 -0.31
117 AT1G70940 Auxin efflux carrier family protein ARABIDOPSIS PIN-FORMED 3,
PIN-FORMED 3
0.64 0.33 -0.32
118 AT3G45620 Transducin/WD40 repeat-like superfamily protein -0.64 0.34 -0.34
119 AT1G02270 Calcium-binding endonuclease/exonuclease/phosphatase family -0.64 0.3 -0.32
120 AT5G47100 calcineurin B-like protein 9 ATCBL9, calcineurin B-like protein
9
0.64 0.3 -0.33
121 AT2G31210 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein
-0.64 0.32 -0.32
122 AT1G05270 TraB family protein -0.64 0.31 -0.31
123 AT5G58150 Leucine-rich repeat protein kinase family protein 0.64 0.34 -0.28
124 AT4G16570 protein arginine methyltransferase 7 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 7,
protein arginine methyltransferase
7
0.64 0.32 -0.3
125 AT4G33130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: 6 growth stages; BEST Arabidopsis thaliana protein
match is: Protein of unknown function, DUF547
(TAIR:AT1G16750.1); Has 192 Blast hits to 192 proteins in
18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 189; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).
0.63 0.31 -0.32
126 AT4G25880 pumilio 6 pumilio 6, pumilio 6 0.63 0.33 -0.29
127 AT4G11890 Protein kinase superfamily protein -0.63 0.35 -0.32
128 AT5G14890 NHL domain-containing protein -0.63 0.31 -0.32
129 AT3G62860 alpha/beta-Hydrolases superfamily protein 0.63 0.32 -0.32
130 AT1G21080 DNAJ heat shock N-terminal domain-containing protein -0.63 0.32 -0.31
131 AT3G50590 Transducin/WD40 repeat-like superfamily protein -0.63 0.3 -0.32
132 AT4G02980 endoplasmic reticulum auxin binding protein 1 ABP, endoplasmic reticulum auxin
binding protein 1
-0.63 0.33 -0.32
133 AT5G20090 Uncharacterised protein family (UPF0041) -0.63 0.33 -0.32
134 AT4G25720 glutaminyl cyclase ARABIDOPSIS THALIANA GLUTAMINYL
CYCLASE, glutaminyl cyclase,
GLUTAMINYL CYCLOTRANSFERASE
-0.63 0.31 -0.32
135 AT3G28480 Oxoglutarate/iron-dependent oxygenase -0.63 0.31 -0.33
136 AT3G54220 GRAS family transcription factor SCARECROW, SHOOT GRAVITROPISM 1 0.63 0.34 -0.31
137 AT2G20142 Toll-Interleukin-Resistance (TIR) domain family protein -0.63 0.29 -0.31
138 AT4G16340 guanyl-nucleotide exchange factors;GTPase binding;GTP
binding
SPIKE1 0.62 0.32 -0.3
139 AT1G72090 Methylthiotransferase 0.62 0.32 -0.31
140 AT3G18215 Protein of unknown function, DUF599 0.62 0.33 -0.32
141 AT2G06390 transposable element gene 0.62 0.33 -0.34
142 AT1G72410 COP1-interacting protein-related 0.61 0.33 -0.32
143 AT5G55370 MBOAT (membrane bound O-acyl transferase) family protein 0.61 0.33 -0.34
144 AT5G23170 Protein kinase superfamily protein 0.61 0.31 -0.3
145 AT1G10750 Protein of Unknown Function (DUF239) 0.61 0.32 -0.31
146 AT1G75430 BEL1-like homeodomain 11 BEL1-like homeodomain 11 0.61 0.31 -0.33
147 AT4G37890 Zinc finger (C3HC4-type RING finger) family protein embryo sac development arrest 40 0.61 0.33 -0.34
148 AT5G60210 ROP interactive partner 5 ROP interactive partner 5 0.6 0.31 -0.33
149 AT3G43650 transposable element gene 0.6 0.32 -0.33
150 AT5G27220 Frigida-like protein 0.6 0.33 -0.3
151 AT3G28860 ATP binding cassette subfamily B19 ATP-binding cassette B19,
Arabidopsis thaliana ATP-binding
cassette B19, ATMDR1, MULTIDRUG
RESISTANCE PROTEIN 11, ATPGP19,
MDR1, MDR11, P-GLYCOPROTEIN 19
0.6 0.32 -0.33
152 AT1G63690 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2,
SIGNAL PEPTIDE PEPTIDASE-LIKE 2
0.6 0.31 -0.32
153 AT1G28650 GDSL-like Lipase/Acylhydrolase superfamily protein 0.6 0.31 -0.3
154 AT3G07130 purple acid phosphatase 15 PURPLE ACID PHOSPHATASE 15, purple
acid phosphatase 15
0.6 0.33 -0.31
155 AT5G60690 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein
INTERFASCICULAR FIBERLESS,
INTERFASCICULAR FIBERLESS 1,
REVOLUTA
0.59 0.3 -0.33
156 AT1G80780 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein
0.59 0.31 -0.31
157 AT4G23750 cytokinin response factor 2 cytokinin response factor 2,
TARGET OF MONOPTEROS 3
0.59 0.31 -0.33
158 AT5G59740 UDP-N-acetylglucosamine (UAA) transporter family 0.59 0.31 -0.33
159 AT1G53380 Plant protein of unknown function (DUF641) 0.59 0.3 -0.3