AT4G09730 : RH39
Query Information
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AGICode AT4G09730
Description RH39
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G09730 RH39 RH39 1 0.31 -0.3
2 AT3G07430 YGGT family protein ATYLMG1-1, embryo defective 1990,
YLMG1-1		 0.9 0.32 -0.32
3 AT2G31170 Cysteinyl-tRNA synthetase, class Ia family protein FIONA, cysteinyl t-RNA synthetase 0.89 0.32 -0.32
4 AT1G06950 translocon at the inner envelope membrane of chloroplasts
110		 ARABIDOPSIS THALIANA TRANSLOCON AT
THE INNER ENVELOPE MEMBRANE OF
CHLOROPLASTS 110, translocon at
the inner envelope membrane of
chloroplasts 110		 0.89 0.31 -0.32
5 AT3G54090 fructokinase-like 1 fructokinase-like 1 0.88 0.32 -0.33
6 AT1G15140 FAD/NAD(P)-binding oxidoreductase 0.86 0.32 -0.31
7 AT1G69740 Aldolase superfamily protein HEMB1 0.86 0.31 -0.3
8 AT3G08740 elongation factor P (EF-P) family protein 0.85 0.31 -0.33
9 AT5G46290 3-ketoacyl-acyl carrier protein synthase I KETOACYL-ACP SYNTHASE 1,
3-ketoacyl-acyl carrier protein
synthase I		 0.85 0.32 -0.31
10 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.85 0.32 -0.33
11 AT5G17710 Co-chaperone GrpE family protein embryo defective 1241 0.85 0.32 -0.29
12 AT2G42770 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.84 0.31 -0.29
13 AT2G28000 chaperonin-60alpha CHLOROPLAST CHAPERONIN 60ALPHA,
chaperonin-60alpha,
chaperonin-60alpha1, SCHLEPPERLESS		 0.84 0.32 -0.32
14 AT2G22870 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 embryo defective 2001 0.84 0.31 -0.33
15 AT5G48630 Cyclin family protein 0.84 0.3 -0.31
16 AT1G48570 zinc finger (Ran-binding) family protein 0.83 0.3 -0.32
17 AT5G24650 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.83 0.3 -0.31
18 AT3G59980 Nucleic acid-binding, OB-fold-like protein 0.83 0.32 -0.33
19 AT2G43710 Plant stearoyl-acyl-carrier-protein desaturase family
protein		 FATTY ACID BIOSYNTHESIS 2,
suppressor of SA insensitive 2		 0.83 0.3 -0.31
20 AT3G63190 ribosome recycling factor, chloroplast precursor Arabidopsis thaliana chloroplast
ribosome recycling factor,
chloroplast ribosome recycling
factor, HIGH CHLOROPHYLL
FLUORESCENCE AND PALE GREEN MUTANT
108, ribosome recycling factor,
chloroplast precursor		 0.83 0.34 -0.31
21 AT5G55280 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 ARABIDOPSIS THALIANA HOMOLOG OF
BACTERIAL CYTOKINESIS Z-RING
PROTEIN FTSZ 1-1, CHLOROPLAST
FTSZ, homolog of bacterial
cytokinesis Z-ring protein FTSZ
1-1		 0.83 0.31 -0.31
22 AT3G57610 adenylosuccinate synthase adenylosuccinate synthase 0.82 0.31 -0.31
23 AT3G57560 N-acetyl-l-glutamate kinase N-acetyl-l-glutamate kinase 0.82 0.31 -0.31
24 AT5G20720 chaperonin 20 ATCPN21, CHLOROPLAST CHAPERONIN
10, CHLOROPLAST CHAPERONIN 10,
chaperonin 20, CPN21		 0.82 0.3 -0.31
25 AT5G49910 chloroplast heat shock protein 70-2 chloroplast heat shock protein
70-2, HEAT SHOCK PROTEIN 70-7		 0.82 0.29 -0.32
26 AT1G13270 methionine aminopeptidase 1B METHIONINE AMINOPEPTIDASE 1B,
methionine aminopeptidase 1B		 0.82 0.33 -0.31
27 AT2G43630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast, nucleus, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67
Blast hits to 67 proteins in 20 species: Archae - 0;
Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses
- 2; Other Eukaryotes - 2 (source: NCBI BLink).		 0.82 0.3 -0.31
28 AT3G23710 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-III,
translocon at the inner envelope
membrane of chloroplasts 22-III		 0.82 0.31 -0.31
29 AT1G74970 ribosomal protein S9 ribosomal protein S9, TWN3 0.82 0.31 -0.33
30 AT1G62390 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein		 CLUMPED CHLOROPLASTS 1, Phox2 0.82 0.3 -0.32
31 AT3G61770 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.81 0.31 -0.32
32 AT3G07630 arogenate dehydratase 2 arogenate dehydratase 2,
Arabidopsis thaliana arogenate
dehydratase 2		 0.81 0.32 -0.32
33 AT2G40290 Eukaryotic translation initiation factor 2 subunit 1 0.81 0.31 -0.32
34 AT3G61130 galacturonosyltransferase 1 galacturonosyltransferase 1, LGT1 0.8 0.31 -0.31
35 AT2G24020 Uncharacterised BCR, YbaB family COG0718 0.8 0.32 -0.31
36 AT1G18440 Peptidyl-tRNA hydrolase family protein 0.8 0.32 -0.31
37 AT3G56680 Single-stranded nucleic acid binding R3H protein 0.79 0.32 -0.31
38 AT2G20140 AAA-type ATPase family protein regulatory particle AAA-ATPase 2b 0.79 0.32 -0.32
39 AT4G26900 HIS HF HIS HF, HISN4 0.79 0.32 -0.33
40 AT3G53580 diaminopimelate epimerase family protein 0.79 0.33 -0.33
41 AT2G25870 haloacid dehalogenase-like hydrolase family protein 0.79 0.33 -0.32
42 AT1G79560 FTSH protease 12 EMBRYO DEFECTIVE 1047, EMBRYO
DEFECTIVE 156, EMBRYO DEFECTIVE
36, FTSH protease 12		 0.79 0.32 -0.3
43 AT1G08640 Chloroplast J-like domain 1 Chloroplast J-like domain 1 0.79 0.31 -0.31
44 AT1G08880 Histone superfamily protein GAMMA H2AX, gamma histone variant
H2AX, H2AXA, histone H2A 5		 0.78 0.29 -0.32
45 AT4G32900 Peptidyl-tRNA hydrolase II (PTH2) family protein 0.78 0.32 -0.31
46 AT2G39290 phosphatidylglycerolphosphate synthase 1 phosphatidylglycerolphosphate
synthase 1,
PHOSPHATIDYLGLYCEROLPHOSPHATE
SYNTHASE 1, PGS1		 0.78 0.31 -0.32
47 AT4G26270 phosphofructokinase 3 phosphofructokinase 3 -0.78 0.29 -0.32
48 AT5G28840 GDP-D-mannose 3',5'-epimerase GDP-D-mannose 3',5'-epimerase 0.78 0.33 -0.29
49 AT4G33760 tRNA synthetase class II (D, K and N) family protein 0.78 0.28 -0.29
50 AT1G76160 SKU5 similar 5 SKU5 similar 5 0.77 0.32 -0.3
51 AT5G16620 hydroxyproline-rich glycoprotein family protein translocon at the inner envelope
membrane of chloroplasts 40,
pigment defective embryo 120,
translocon at the inner envelope
membrane of chloroplasts 40		 0.77 0.3 -0.3
52 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11		 -0.77 0.33 -0.31
53 AT1G66520 formyltransferase, putative pigment defective 194 0.77 0.31 -0.34
54 AT5G23070 Thymidine kinase 0.77 0.31 -0.34
55 AT5G24690 Protein of unknown function (DUF3411) 0.77 0.31 -0.28
56 AT4G24175 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0307
(InterPro:IPR006839); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.77 0.33 -0.33
57 AT3G05000 Transport protein particle (TRAPP) component 0.77 0.31 -0.31
58 AT4G14360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.77 0.31 -0.32
59 AT5G07320 Mitochondrial substrate carrier family protein ATP/phosphate carrier 3 0.76 0.31 -0.3
60 AT3G47520 malate dehydrogenase malate dehydrogenase, plastidic
NAD-dependent malate dehydrogenase		 0.76 0.32 -0.31
61 AT3G20320 trigalactosyldiacylglycerol2 ATP-binding cassette I15,
trigalactosyldiacylglycerol2		 0.76 0.34 -0.28
62 AT2G18290 anaphase promoting complex 10 anaphase promoting complex 10,
EMBRYO DEFECTIVE 2783		 0.76 0.32 -0.3
63 AT4G27080 PDI-like 5-4 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 7, PDI-like
5-4, PROTEIN DISULFIDE ISOMERASE
7, PDI-like 5-4		 0.76 0.31 -0.3
64 AT5G64290 dicarboxylate transport 2.1 DCT, dicarboxylate transport 2.1 0.76 0.29 -0.29
65 AT3G17970 translocon at the outer membrane of chloroplasts 64-III translocon at the outer membrane
of chloroplasts 64-III, translocon
at the outer membrane of
chloroplasts 64-III		 0.76 0.32 -0.31
66 AT2G46680 homeobox 7 homeobox 7, ARABIDOPSIS THALIANA
HOMEOBOX 7, homeobox 7		 -0.75 0.31 -0.29
67 AT5G59310 lipid transfer protein 4 lipid transfer protein 4 -0.71 0.31 -0.31
68 AT5G53120 spermidine synthase 3 SPERMIDINE SYNTHASE 3, spermidine
synthase 3, SPMS		 -0.71 0.29 -0.32
69 AT5G18170 glutamate dehydrogenase 1 glutamate dehydrogenase 1 -0.7 0.31 -0.31
70 AT2G18050 histone H1-3 histone H1-3 -0.7 0.31 -0.33
71 AT4G17030 expansin-like B1 AT-EXPR, expansin-like B1,
ATEXPR1, ATHEXP BETA 3.1,
expansin-like B1, EXPR		 -0.69 0.3 -0.31
72 AT5G59320 lipid transfer protein 3 lipid transfer protein 3 -0.69 0.3 -0.3
73 AT3G48510 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G63350.1); Has 98 Blast hits
to 98 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.33 -0.32
74 AT2G47810 nuclear factor Y, subunit B5 nuclear factor Y, subunit B5 -0.66 0.32 -0.31
75 AT4G05100 myb domain protein 74 myb domain protein 74, myb domain
protein 74		 -0.66 0.3 -0.33
76 AT2G43570 chitinase, putative chitinase, putative -0.65 0.31 -0.3
77 AT1G55265 Protein of unknown function, DUF538 -0.64 0.3 -0.3
78 AT4G20880 ethylene-responsive nuclear protein / ethylene-regulated
nuclear protein (ERT2)		 -0.64 0.3 -0.3
79 AT5G24750 UDP-Glycosyltransferase superfamily protein -0.64 0.31 -0.33
80 AT2G12400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in
23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi -
0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source:
NCBI BLink).		 -0.64 0.32 -0.32
81 AT1G64620 Dof-type zinc finger DNA-binding family protein -0.63 0.32 -0.3
82 AT1G15310 signal recognition particle 54 kDa subunit signal recognition particle 54 kDa
subunit, SIGNAL RECOGNITION
PARTICLE 54 KDA SUBUNIT		 -0.63 0.32 -0.32
83 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.63 0.3 -0.34
84 AT1G78780 pathogenesis-related family protein -0.62 0.32 -0.31
85 AT5G06730 Peroxidase superfamily protein -0.62 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
86 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II -0.65 0.3 -0.32 C0097