AT4G07540 : -
Query Information
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AGICode AT4G07540
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G07540 transposable element gene 1 0.3 -0.31
2 AT1G41797 transposable element gene 0.76 0.33 -0.32
3 AT4G21150 ribophorin II (RPN2) family protein HAPLESS 6 -0.71 0.32 -0.3
4 AT1G10950 transmembrane nine 1 AtTMN1, transmembrane nine 1 -0.71 0.32 -0.32
5 AT3G12480 nuclear factor Y, subunit C11 nuclear factor Y, subunit C11 0.68 0.29 -0.32
6 AT3G43630 Vacuolar iron transporter (VIT) family protein -0.68 0.34 -0.3
7 AT2G20150 unknown protein; Has 5 Blast hits to 5 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.67 0.29 -0.3
8 AT3G08960 ARM repeat superfamily protein -0.66 0.33 -0.3
9 AT2G15695 Protein of unknown function DUF829, transmembrane 53 0.66 0.32 -0.3
10 AT1G63780 Ribosomal RNA processing Brix domain protein IMP4 -0.65 0.32 -0.31
11 AT3G49890 unknown protein; Has 27 Blast hits to 27 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.65 0.31 -0.31
12 AT2G05950 transposable element gene 0.65 0.33 -0.3
13 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 0.64 0.29 -0.35
14 AT5G30480 transposable element gene 0.63 0.3 -0.33
15 AT3G47160 RING/U-box superfamily protein 0.63 0.31 -0.33
16 AT3G09090 defective in exine formation protein (DEX1) DEFECTIVE IN EXINE FORMATION 1 -0.63 0.32 -0.32
17 AT1G68150 WRKY DNA-binding protein 9 ATWRKY9, WRKY DNA-binding protein
9		 -0.63 0.3 -0.28
18 AT1G26460 Tetratricopeptide repeat (TPR)-like superfamily protein -0.63 0.32 -0.31
19 AT1G34210 somatic embryogenesis receptor-like kinase 2 ATSERK2, somatic embryogenesis
receptor-like kinase 2		 -0.62 0.34 -0.31
20 AT1G73240 CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup
(InterPro:IPR019049); Has 36 Blast hits to 36 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.32 -0.3
21 AT5G24280 gamma-irradiation and mitomycin c induced 1 GAMMA-IRRADIATION AND MITOMYCIN C
INDUCED 1		 -0.62 0.31 -0.32
22 AT5G06020 Plant self-incompatibility protein S1 family 0.62 0.33 -0.32
23 AT3G56270 Plant protein of unknown function (DUF827) 0.61 0.3 -0.31
24 AT3G48900 single-stranded DNA endonuclease family protein -0.61 0.31 -0.33
25 AT1G72080 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.61 0.34 -0.32
26 AT1G09940 Glutamyl-tRNA reductase family protein HEMA2 -0.61 0.32 -0.33
27 AT4G39650 gamma-glutamyl transpeptidase 2 gamma-glutamyl transpeptidase 2 -0.6 0.32 -0.32
28 AT1G56290 CwfJ-like family protein 0.6 0.32 -0.33
29 AT2G40720 Tetratricopeptide repeat (TPR)-like superfamily protein -0.6 0.31 -0.3
30 AT3G30740 40S ribosomal protein S25 (RPS25C), pseudogene, similar to
GB:P46301 GI:1173234 40S RIBOSOMAL PROTEIN S25 from
(Lycopersicon esculentum); blastp match of 75% identity and
7.2e-09 P-value to SP|P46301|RS25_LYCES 40S ribosomal
protein S25. (Tomato) {Lycopersicon esculentum}		 0.6 0.31 -0.32
31 AT1G49150 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.32 -0.32
32 AT4G14670 casein lytic proteinase B2 casein lytic proteinase B2 -0.59 0.31 -0.3
33 AT1G64280 regulatory protein (NPR1) ARABIDOPSIS NONEXPRESSER OF PR
GENES 1, NON-INDUCIBLE IMMUNITY 1,
NONEXPRESSER OF PR GENES 1,
SALICYLIC ACID INSENSITIVE 1		 0.59 0.32 -0.34
34 AT1G13610 alpha/beta-Hydrolases superfamily protein 0.59 0.33 -0.3
35 AT3G19070 Homeodomain-like superfamily protein -0.59 0.31 -0.33
36 AT4G24020 NIN like protein 7 NIN like protein 7 0.59 0.29 -0.33
37 AT4G20770 Pentatricopeptide repeat (PPR) superfamily protein -0.59 0.3 -0.33
38 AT5G43480 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.59 0.32 -0.31
39 AT1G11940 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.59 0.32 -0.34
40 AT3G42690 transposable element gene -0.58 0.3 -0.32
41 AT5G54700 Ankyrin repeat family protein 0.58 0.31 -0.32
42 AT1G72960 Root hair defective 3 GTP-binding protein (RHD3) 0.58 0.31 -0.31
43 AT3G59070 Cytochrome b561/ferric reductase transmembrane with DOMON
related domain		 0.58 0.33 -0.32
44 AT1G32000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G38190.1); Has 14 Blast hits to 14
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.58 0.32 -0.29
45 AT4G32750 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.58 0.35 -0.31
46 AT1G13830 Carbohydrate-binding X8 domain superfamily protein -0.58 0.32 -0.31
47 AT1G51880 root hair specific 6 root hair specific 6 0.58 0.31 -0.32
48 AT2G31080 transposable element gene -0.57 0.34 -0.3
49 AT3G57650 lysophosphatidyl acyltransferase 2 lysophosphatidyl acyltransferase 2 -0.57 0.3 -0.31
50 AT3G13400 SKU5 similar 13 SKU5 similar 13 -0.57 0.3 -0.31
51 AT1G21870 golgi nucleotide sugar transporter 5 golgi nucleotide sugar transporter
5		 0.57 0.32 -0.31
52 AT3G04605 transposable element gene -0.57 0.32 -0.35
53 AT1G59780 NB-ARC domain-containing disease resistance protein -0.57 0.32 -0.3
54 AT5G11430 SPOC domain / Transcription elongation factor S-II protein -0.57 0.33 -0.32
55 AT3G28720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in
85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi
- 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732
(source: NCBI BLink).		 -0.57 0.31 -0.33
56 AT5G16610 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.57 0.34 -0.32
57 AT4G07780 transposable element gene 0.57 0.32 -0.3
58 AT5G65500 U-box domain-containing protein kinase family protein 0.56 0.31 -0.31
59 AT5G44970 Protein with RNI-like/FBD-like domains -0.56 0.3 -0.3
60 AT1G26860 transposable element gene 0.56 0.3 -0.33
61 AT1G04080 Tetratricopeptide repeat (TPR)-like superfamily protein PRP39 -0.56 0.31 -0.32
62 AT1G17790 DNA-binding bromodomain-containing protein 0.56 0.29 -0.33
63 AT3G44460 Basic-leucine zipper (bZIP) transcription factor family
protein		 basic leucine zipper transcription
factor 67, DPBF2		 -0.56 0.32 -0.34
64 AT1G53510 mitogen-activated protein kinase 18 ARABIDOPSIS THALIANA MAP KINASE
18, mitogen-activated protein
kinase 18		 -0.56 0.34 -0.29
65 AT3G52690 RNI-like superfamily protein -0.56 0.28 -0.34
66 AT3G20190 Leucine-rich repeat protein kinase family protein 0.56 0.31 -0.34
67 AT3G42860 zinc knuckle (CCHC-type) family protein 0.56 0.31 -0.32
68 AT3G28610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.56 0.32 -0.29
69 AT1G17040 SH2 domain protein A ARABIDOPSIS THALIANA SH2 DOMAIN
PROTEIN A, SH2 domain protein A,
STAT-TYPE LINKER-SH2 DOMAIN FACTOR
A		 0.56 0.32 -0.27
70 AT1G65640 DegP protease 4 DegP protease 4 0.55 0.33 -0.32
71 AT5G09340 Ubiquitin family protein 0.55 0.3 -0.32
72 AT5G65590 Dof-type zinc finger DNA-binding family protein 0.55 0.31 -0.33
73 AT4G11940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G11930.1); Has 37 Blast hits
to 37 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.31 -0.32
74 AT2G46375 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G61660.1); Has 12 Blast hits
to 12 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.32 -0.32
75 AT5G62610 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.55 0.32 -0.29
76 AT5G54130 Calcium-binding endonuclease/exonuclease/phosphatase family -0.54 0.33 -0.33
77 AT5G45180 Flavin-binding monooxygenase family protein -0.54 0.3 -0.31
78 AT2G21470 SUMO-activating enzyme 2 SUMO-ACTIVATING ENZYME 2, EMBRYO
DEFECTIVE 2764, SUMO-activating
enzyme 2		 -0.54 0.32 -0.31
79 AT4G12860 EF hand calcium-binding protein family unfertilized embryo sac 14 -0.54 0.31 -0.31
80 AT4G04280 transposable element gene -0.54 0.31 -0.3
81 AT4G32180 pantothenate kinase 2 pantothenate kinase 2,
pantothenate kinase 2		 -0.54 0.3 -0.33
82 AT5G11820 Plant self-incompatibility protein S1 family 0.54 0.29 -0.33
83 AT1G75430 BEL1-like homeodomain 11 BEL1-like homeodomain 11 -0.54 0.31 -0.33
84 AT5G35150 transposable element gene -0.54 0.33 -0.31
85 AT2G38520 transposable element gene -0.54 0.31 -0.34
86 AT5G35600 histone deacetylase7 histone deacetylase7 -0.53 0.32 -0.32
87 AT1G03960 Calcium-binding EF hand family protein -0.53 0.32 -0.3
88 AT4G16447 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.53 0.32 -0.32
89 AT2G33690 Late embryogenesis abundant protein, group 6 -0.53 0.3 -0.3
90 AT1G32290 unknown protein; Has 7 Blast hits to 5 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 1 (source: NCBI
BLink).		 -0.53 0.34 -0.34
91 AT5G14900 helicase associated (HA2) domain-containing protein 0.53 0.3 -0.33
92 AT4G04530 transposable element gene 0.53 0.32 -0.31
93 AT1G03720 Cysteine proteinases superfamily protein -0.53 0.32 -0.32
94 AT4G02910 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.53 0.3 -0.33
95 AT2G29050 RHOMBOID-like 1 RHOMBOID-like 1, RHOMBOID-like 1 0.53 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
96 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.74 0.41 -0.45 C0234
97 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.72 0.42 -0.43 C0099
98 C0162 MST_1588.3 - - - 0.71 0.43 -0.46
99 C0006 β-Homothreonine L-β-Homothreonine - - 0.71 0.43 -0.45
100 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		0.69 0.48 -0.44 C0073
101 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.69 0.46 -0.47 C0261
102 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.67 0.46 -0.43 C0262
103 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		0.67 0.47 -0.43 C0015
104 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.66 0.43 -0.44 C0032
105 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.66 0.44 -0.44 C0030
106 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.66 0.48 -0.44 C0088
107 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.66 0.43 -0.42 C0087
108 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		0.65 0.46 -0.45 C0027
109 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.65 0.42 -0.4
110 C0114 Homocystine L-Homocystine - - 0.63 0.31 -0.31
111 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III 0.58 0.46 -0.45 C0195