AT4G05400 : -
Query Information
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AGICode AT4G05400
Description copper ion binding
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G05400 copper ion binding 1 0.32 -0.31
2 AT5G49660 Leucine-rich repeat transmembrane protein kinase family
protein		 XYLEM INTERMIXED WITH PHLOEM 1 -0.86 0.31 -0.29
3 AT1G18470 Transmembrane Fragile-X-F-associated protein -0.85 0.32 -0.31
4 AT4G25890 60S acidic ribosomal protein family 0.85 0.32 -0.33
5 AT3G28007 Nodulin MtN3 family protein AtSWEET4, SWEET4 -0.85 0.31 -0.32
6 AT5G67510 Translation protein SH3-like family protein 0.83 0.31 -0.3
7 AT3G53960 Major facilitator superfamily protein -0.83 0.31 -0.3
8 AT2G25625 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED
DURING: LP.06 six leaves visible, LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage; Has 24 Blast hits to 24 proteins in 9 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.82 0.33 -0.31
9 AT1G61580 R-protein L3 B ARABIDOPSIS RIBOSOMAL PROTEIN 2,
R-protein L3 B		 0.82 0.32 -0.32
10 AT3G07580 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 12 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G48335.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.82 0.3 -0.3
11 AT1G27200 Domain of unknown function (DUF23) -0.82 0.31 -0.32
12 AT1G07370 proliferating cellular nuclear antigen 1 PROLIFERATING CELLULAR NUCLEAR
ANTIGEN 1, proliferating cellular
nuclear antigen 1		 0.82 0.31 -0.31
13 AT1G04680 Pectin lyase-like superfamily protein 0.81 0.33 -0.31
14 AT1G08920 ERD (early response to dehydration) six-like 1 ERD (early response to
dehydration) six-like 1		 -0.81 0.32 -0.33
15 AT1G24280 glucose-6-phosphate dehydrogenase 3 glucose-6-phosphate dehydrogenase
3		 0.81 0.34 -0.33
16 AT3G25620 ABC-2 type transporter family protein ATP-binding cassette G21 -0.81 0.31 -0.33
17 AT2G18400 ribosomal protein L6 family protein 0.81 0.3 -0.33
18 AT1G62310 transcription factor jumonji (jmjC) domain-containing
protein		 -0.8 0.31 -0.33
19 AT3G04770 40s ribosomal protein SA B 40s ribosomal protein SA B 0.8 0.33 -0.32
20 AT4G30790 INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Autophagy-related protein 17
(InterPro:IPR007240), Autophagy-related protein 11
(InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins
in 570 species: Archae - 89; Bacteria - 657; Metazoa -
4844; Fungi - 808; Plants - 441; Viruses - 15; Other
Eukaryotes - 1939 (source: NCBI BLink).		 -0.8 0.31 -0.31
21 AT3G52580 Ribosomal protein S11 family protein 0.8 0.3 -0.32
22 AT1G17550 homology to ABI2 homology to ABI2 -0.8 0.31 -0.31
23 AT2G40460 Major facilitator superfamily protein -0.8 0.32 -0.28
24 AT2G22430 homeobox protein 6 homeobox protein 6, homeobox
protein 6		 -0.8 0.33 -0.33
25 AT1G58360 amino acid permease 1 amino acid permease 1, NEUTRAL
AMINO ACID TRANSPORTER 2		 -0.79 0.32 -0.32
26 AT3G43230 RING/FYVE/PHD-type zinc finger family protein -0.79 0.33 -0.31
27 AT4G36040 Chaperone DnaJ-domain superfamily protein DnaJ11 -0.79 0.31 -0.32
28 AT5G66920 SKU5 similar 17 SKU5 similar 17 0.79 0.34 -0.31
29 AT5G18130 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.78 0.31 -0.33
30 AT1G67300 Major facilitator superfamily protein -0.78 0.34 -0.32
31 AT1G04590 BEST Arabidopsis thaliana protein match is:
Pentatricopeptide repeat (PPR) superfamily protein
(TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.78 0.31 -0.29
32 AT3G52240 unknown protein; Has 220 Blast hits to 193 proteins in 66
species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi -
33; Plants - 66; Viruses - 0; Other Eukaryotes - 53
(source: NCBI BLink).		 -0.78 0.31 -0.33
33 AT2G38465 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 11 growth stages; Has 16 Blast hits to 16 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.78 0.3 -0.31
34 AT1G55110 indeterminate(ID)-domain 7 indeterminate(ID)-domain 7,
indeterminate(ID)-domain 7		 -0.78 0.29 -0.32
35 AT3G45160 Putative membrane lipoprotein 0.78 0.34 -0.35
36 AT1G20880 RNA-binding (RRM/RBD/RNP motifs) family protein -0.78 0.3 -0.3
37 AT1G54130 RELA/SPOT homolog 3 AT-RSH3, RELA/SPOT HOMOLOG 3,
RELA/SPOT homolog 3		 -0.78 0.32 -0.28
38 AT5G61560 U-box domain-containing protein kinase family protein -0.78 0.33 -0.29
39 AT4G33950 Protein kinase superfamily protein OPEN STOMATA 1, OPEN STOMATA 1,
P44, SUCROSE NONFERMENTING
1-RELATED PROTEIN KINASE 2-6,
SNF1-RELATED PROTEIN KINASE 2.6,
SRK2E		 -0.77 0.32 -0.32
40 AT2G17700 ACT-like protein tyrosine kinase family protein serine/threonine/tyrosine kinase 8 -0.77 0.33 -0.31
41 AT5G09620 Octicosapeptide/Phox/Bem1p family protein -0.77 0.31 -0.31
42 AT3G12400 Ubiquitin-conjugating enzyme/RWD-like protein ATELC, ELC -0.77 0.31 -0.33
43 AT2G29570 proliferating cell nuclear antigen 2 A. THALIANA PROLIFERATING CELL
NUCLEAR ANTIGEN 2, proliferating
cell nuclear antigen 2		 0.77 0.31 -0.32
44 AT5G01470 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.77 0.32 -0.32
45 AT1G29980 Protein of unknown function, DUF642 0.77 0.31 -0.31
46 AT3G51895 sulfate transporter 3;1 AST12, sulfate transporter 3;1 -0.77 0.32 -0.32
47 AT3G49590 Autophagy-related protein 13 autophagy-related 13 -0.77 0.31 -0.31
48 AT2G32380 Transmembrane protein 97, predicted 0.77 0.32 -0.31
49 AT4G12880 early nodulin-like protein 19 AtENODL19, early nodulin-like
protein 19		 0.77 0.31 -0.32
50 AT5G44900 Toll-Interleukin-Resistance (TIR) domain family protein 0.76 0.34 -0.33
51 AT1G68820 Transmembrane Fragile-X-F-associated protein -0.76 0.31 -0.31
52 AT5G18640 alpha/beta-Hydrolases superfamily protein -0.76 0.32 -0.35
53 AT1G73480 alpha/beta-Hydrolases superfamily protein -0.76 0.32 -0.3
54 AT4G18160 Ca2+ activated outward rectifying K+ channel 6 CA2+ ACTIVATED OUTWARD RECTIFYING
K+ CHANNEL 6, ATTPK3, Ca2+
activated outward rectifying K+
channel 6, TPK3		 -0.76 0.33 -0.31
55 AT3G17000 ubiquitin-conjugating enzyme 32 ubiquitin-conjugating enzyme 32 -0.76 0.29 -0.31
56 AT1G48960 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.76 0.33 -0.3
57 AT5G46350 WRKY DNA-binding protein 8 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 8, WRKY
DNA-binding protein 8		 -0.76 0.33 -0.28
58 AT4G11370 RING-H2 finger A1A RING-H2 finger A1A -0.76 0.29 -0.33
59 AT1G12010 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.76 0.32 -0.3
60 AT3G50760 galacturonosyltransferase-like 2 galacturonosyltransferase-like 2 -0.76 0.32 -0.31
61 AT5G35560 DENN (AEX-3) domain-containing protein -0.76 0.31 -0.31
62 AT5G27280 Zim17-type zinc finger protein -0.76 0.31 -0.33
63 AT2G07340 PREFOLDIN 1 PREFOLDIN 1 0.76 0.3 -0.31
64 AT2G35605 SWIB/MDM2 domain superfamily protein 0.76 0.3 -0.33
65 AT4G16190 Papain family cysteine protease -0.76 0.35 -0.32
66 AT3G04920 Ribosomal protein S24e family protein 0.75 0.29 -0.32
67 AT4G18800 RAB GTPase homolog A1D ATHSGBP, ATRAB11B, RAB GTPase
homolog A1D, RAB GTPase homolog
A1D		 0.75 0.33 -0.32
68 AT1G31480 shoot gravitropism 2 (SGR2) SHOOT GRAVITROPISM 2 -0.75 0.29 -0.31
69 AT3G07360 plant U-box 9 ARABIDOPSIS THALIANA PLANT U-BOX
9, plant U-box 9		 -0.75 0.32 -0.32
70 AT1G51060 histone H2A 10 histone H2A 10 0.75 0.32 -0.3
71 AT5G56940 Ribosomal protein S16 family protein 0.75 0.33 -0.32
72 AT5G13200 GRAM domain family protein -0.75 0.31 -0.31
73 AT4G11460 cysteine-rich RLK (RECEPTOR-like protein kinase) 30 cysteine-rich RLK (RECEPTOR-like
protein kinase) 30		 0.75 0.31 -0.34
74 AT3G01560 Protein of unknown function (DUF1421) -0.75 0.31 -0.32
75 AT5G57700 BNR/Asp-box repeat family protein 0.75 0.31 -0.33
76 AT2G38790 unknown protein; Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.75 0.29 -0.31
77 AT3G48020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, 4 anthesis; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.75 0.32 -0.33
78 AT1G47290 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 3beta-hydroxysteroid-dehydrogenase
/decarboxylase isoform 1,
3beta-hydroxysteroid-dehydrogenase
/decarboxylase isoform 1		 0.75 0.3 -0.31
79 AT2G44380 Cysteine/Histidine-rich C1 domain family protein 0.75 0.29 -0.33
80 AT3G62050 Putative endonuclease or glycosyl hydrolase 0.75 0.3 -0.33
81 AT1G09815 polymerase delta 4 polymerase delta 4 0.75 0.34 -0.32
82 AT5G05990 Mitochondrial glycoprotein family protein 0.75 0.32 -0.31
83 AT3G20300 Protein of unknown function (DUF3537) -0.75 0.32 -0.33
84 AT3G09770 RING/U-box superfamily protein LOSS OF GDU 2 -0.75 0.3 -0.3
85 AT4G22980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9
growth stages; BEST Arabidopsis thaliana protein match is:
Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein (TAIR:AT5G51920.1); Has 520 Blast hits
to 468 proteins in 130 species: Archae - 5; Bacteria - 23;
Metazoa - 99; Fungi - 131; Plants - 231; Viruses - 0; Other
Eukaryotes - 31 (source: NCBI BLink).		 -0.75 0.32 -0.32
86 AT5G43430 electron transfer flavoprotein beta electron transfer flavoprotein
beta		 -0.75 0.31 -0.33
87 AT3G55070 LisH/CRA/RING-U-box domains-containing protein -0.74 0.31 -0.31
88 AT4G13270 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.74 0.32 -0.32
89 AT5G55260 protein phosphatase X 2 PROTEIN PHOSPHATASE X -2, protein
phosphatase X 2		 0.74 0.3 -0.32
90 AT4G13770 cytochrome P450, family 83, subfamily A, polypeptide 1 cytochrome P450, family 83,
subfamily A, polypeptide 1,
REDUCED EPIDERMAL FLUORESCENCE 2		 0.74 0.31 -0.31
91 AT4G33540 metallo-beta-lactamase family protein -0.74 0.32 -0.3
92 AT1G06430 FTSH protease 8 FTSH protease 8 -0.74 0.31 -0.3
93 AT5G04250 Cysteine proteinases superfamily protein -0.74 0.33 -0.34
94 AT5G01820 serine/threonine protein kinase 1 ATCIPK14, serine/threonine protein
kinase 1, CBL-INTERACTING PROTEIN
KINASE 14, SOS2-like protein
kinase 24, SNF1-RELATED PROTEIN
KINASE 3.15, serine/threonine
protein kinase 1		 -0.74 0.32 -0.31
95 AT4G35790 phospholipase D delta ARABIDOPSIS THALIANA PHOSPHOLIPASE
D DELTA, phospholipase D delta		 -0.74 0.32 -0.33
96 AT5G64100 Peroxidase superfamily protein 0.74 0.33 -0.32
97 AT2G43430 glyoxalase 2-1 glyoxalase 2-1, GLYOXALASE II -0.74 0.32 -0.31
98 AT2G22010 related to KPC1 related to KPC1 -0.73 0.3 -0.32
99 AT3G07270 GTP cyclohydrolase I 0.73 0.3 -0.31
100 AT3G62370 heme binding 0.73 0.33 -0.32
101 AT4G08500 MAPK/ERK kinase kinase 1 ARAKIN, ATMEKK1, MAPKKK8, MAPK/ERK
kinase kinase 1		 -0.73 0.31 -0.3
102 AT2G22300 signal responsive 1 CALMODULIN-BINDING TRANSCRIPTION
ACTIVATOR 3, signal responsive 1		 -0.73 0.33 -0.31
103 AT4G19230 cytochrome P450, family 707, subfamily A, polypeptide 1 cytochrome P450, family 707,
subfamily A, polypeptide 1		 -0.73 0.31 -0.32
104 AT1G35660 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 11 growth stages; Has 309 Blast hits to 256
proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa
- 192; Fungi - 12; Plants - 36; Viruses - 0; Other
Eukaryotes - 58 (source: NCBI BLink).		 -0.73 0.33 -0.3
105 AT1G05840 Eukaryotic aspartyl protease family protein -0.73 0.33 -0.31
106 AT5G18290 Aquaporin-like superfamily protein SIP1;2, SMALL AND BASIC INTRINSIC
PROTEIN 1B		 -0.73 0.3 -0.31
107 AT5G60140 AP2/B3-like transcriptional factor family protein 0.73 0.31 -0.28
108 AT3G14840 Leucine-rich repeat transmembrane protein kinase 0.73 0.32 -0.32
109 AT3G27640 Transducin/WD40 repeat-like superfamily protein 0.73 0.3 -0.29
110 AT2G47790 Transducin/WD40 repeat-like superfamily protein 0.73 0.31 -0.29
111 AT4G39140 RING/U-box superfamily protein -0.73 0.29 -0.29
112 AT1G72710 casein kinase 1-like protein 2 casein kinase 1-like protein 2 -0.73 0.32 -0.31
113 AT5G19420 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 -0.73 0.33 -0.3
114 AT2G17990 BEST Arabidopsis thaliana protein match is:
kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to
6129 proteins in 783 species: Archae - 220; Bacteria -
1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses -
38; Other Eukaryotes - 1653 (source: NCBI BLink).		 -0.73 0.33 -0.33
115 AT5G16550 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.73 0.32 -0.33
116 AT4G32160 Phox (PX) domain-containing protein -0.73 0.32 -0.31
117 AT3G15580 Ubiquitin-like superfamily protein AUTOPHAGY 8H, AUTOPHAGY 8I -0.73 0.31 -0.31
118 AT2G41040 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.72 0.3 -0.31
119 AT4G13550 triglyceride lipases;triglyceride lipases -0.72 0.3 -0.32
120 AT5G40170 receptor like protein 54 receptor like protein 54, receptor
like protein 54		 -0.72 0.3 -0.32
121 AT1G65580 Endonuclease/exonuclease/phosphatase family protein FRAGILE FIBER3 -0.72 0.31 -0.3
122 AT4G33090 aminopeptidase M1 aminopeptidase M1, AMINOPEPTIDASE
M1		 -0.72 0.31 -0.3
123 AT3G62590 alpha/beta-Hydrolases superfamily protein -0.72 0.31 -0.31
124 AT1G76130 alpha-amylase-like 2 alpha-amylase-like 2, ARABIDOPSIS
THALIANA ALPHA-AMYLASE-LIKE 2		 -0.72 0.3 -0.32
125 AT5G35980 yeast YAK1-related gene 1 yeast YAK1-related gene 1 -0.72 0.3 -0.29
126 AT4G31420 Zinc finger protein 622 -0.72 0.31 -0.31
127 AT2G24420 DNA repair ATPase-related -0.72 0.33 -0.3
128 AT1G75020 lysophosphatidyl acyltransferase 4 lysophosphatidyl acyltransferase 4 -0.72 0.31 -0.34
129 AT5G57390 AINTEGUMENTA-like 5 AINTEGUMENTA-like 5, CHOTTO 1,
EMBRYOMAKER, PLETHORA 5		 -0.72 0.33 -0.34
130 AT4G03410 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein -0.72 0.31 -0.31