AT4G05000 : vacuolar protein sorting-associated protein 28 homolog 1.....
Query Information
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AGICode AT4G05000
Description Vacuolar protein sorting-associated protein VPS28 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G05000 Vacuolar protein sorting-associated protein VPS28 family
protein		 vacuolar protein
sorting-associated protein 28
homolog 1, VPS28-2		 1 0.31 -0.32
2 AT5G59910 Histone superfamily protein HTB4 0.77 0.3 -0.33
3 AT1G66960 Terpenoid cyclases family protein LUP5 -0.77 0.3 -0.3
4 AT2G19790 SNARE-like superfamily protein 0.76 0.29 -0.33
5 AT5G50870 ubiquitin-conjugating enzyme 27 ubiquitin-conjugating enzyme 27 0.74 0.32 -0.33
6 AT3G26550 Cysteine/Histidine-rich C1 domain family protein -0.73 0.3 -0.33
7 AT1G68070 Zinc finger, C3HC4 type (RING finger) family protein 0.73 0.33 -0.33
8 AT3G55440 triosephosphate isomerase CYTOSOLIC TRIOSE PHOSPHATE
ISOMERASE, CYTOSOLIC ISOFORM
TRIOSE PHOSPHATE ISOMERASE,
triosephosphate isomerase		 0.73 0.33 -0.32
9 AT4G16444 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
CHD5-like protein (InterPro:IPR007514); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.72 0.34 -0.3
10 AT3G21800 UDP-glucosyl transferase 71B8 UDP-glucosyl transferase 71B8 -0.72 0.32 -0.29
11 AT1G78040 Pollen Ole e 1 allergen and extensin family protein 0.72 0.32 -0.3
12 AT2G21870 copper ion binding;cobalt ion binding;zinc ion binding MALE GAMETOPHYTE DEFECTIVE 1 0.72 0.33 -0.33
13 AT1G15370 SNARE-like superfamily protein 0.72 0.31 -0.33
14 AT3G55770 GATA type zinc finger transcription factor family protein WLIM2b 0.72 0.33 -0.32
15 AT5G47570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.71 0.32 -0.3
16 AT5G54540 Uncharacterised conserved protein (UCP012943) 0.71 0.31 -0.34
17 AT3G22990 ARM repeat superfamily protein LEAF AND FLOWER RELATED 0.71 0.31 -0.31
18 AT1G67710 response regulator 11 response regulator 11 -0.71 0.31 -0.32
19 AT4G03860 transposable element gene 0.71 0.31 -0.32
20 AT4G12060 Double Clp-N motif protein 0.7 0.31 -0.32
21 AT5G09310 CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl
protease complex, presenilin enhancer-2 subunit
(InterPro:IPR019379); Has 168 Blast hits to 168 proteins in
71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi
- 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6
(source: NCBI BLink).		 0.7 0.33 -0.3
22 AT4G25770 alpha/beta-Hydrolases superfamily protein 0.7 0.31 -0.31
23 AT2G45980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 ATG8-interacting protein 1 0.7 0.32 -0.28
24 AT2G42130 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.7 0.32 -0.31
25 AT4G34050 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 caffeoyl coenzyme A
O-methyltransferase 1		 0.69 0.31 -0.32
26 AT4G05060 PapD-like superfamily protein 0.69 0.33 -0.33
27 AT2G36670 Eukaryotic aspartyl protease family protein -0.69 0.31 -0.33
28 AT1G32410 Vacuolar protein sorting 55 (VPS55) family protein 0.68 0.33 -0.31
29 AT1G47680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G47700.1); Has 3 Blast
hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.68 0.31 -0.32
30 AT1G72570 Integrase-type DNA-binding superfamily protein 0.68 0.31 -0.33
31 AT2G31900 myosin-like protein XIF MYOSIN 5, MYOSIN XI F, myosin-like
protein XIF		 -0.68 0.3 -0.3
32 AT2G25190 PPPDE putative thiol peptidase family protein 0.68 0.32 -0.35
33 AT4G11260 phosphatase-related ATSGT1B, ENHANCED DOWNY MILDEW 1,
ENHANCER OF TIR1-1 AUXIN
RESISTANCE 3, RPR1, SGT1B		 0.68 0.31 -0.31
34 AT5G28050 Cytidine/deoxycytidylate deaminase family protein 0.68 0.32 -0.34
35 AT5G51880 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.68 0.31 -0.34
36 AT2G44610 Ras-related small GTP-binding family protein ATRAB6A, ATRABH1B, RAB6, RAB6A 0.67 0.3 -0.33
37 AT5G53000 2A phosphatase associated protein of 46 kD 2A phosphatase associated protein
of 46 kD		 0.67 0.34 -0.34
38 AT1G10900 Phosphatidylinositol-4-phosphate 5-kinase family protein -0.67 0.32 -0.33
39 AT5G02280 SNARE-like superfamily protein 0.67 0.33 -0.32
40 AT5G05260 cytochrome p450 79a2 cytochrome p450 79a2 -0.67 0.32 -0.3
41 AT3G46010 actin depolymerizing factor 1 actin depolymerizing factor 1,
atadf, ATADF1		 0.67 0.31 -0.32
42 AT3G42790 alfin-like 3 alfin-like 3 0.66 0.32 -0.29
43 AT5G23770 DOMAIN OF UNKNOWN FUNCTION 724 8 DOMAIN OF UNKNOWN FUNCTION 724 8,
DOMAIN OF UNKNOWN FUNCTION 724 8		 -0.66 0.32 -0.32
44 AT5G11280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.66 0.3 -0.32
45 AT2G04330 transposable element gene -0.66 0.33 -0.31
46 AT4G26410 Uncharacterised conserved protein UCP022280 0.66 0.32 -0.32
47 AT3G29630 UDP-Glycosyltransferase superfamily protein -0.66 0.33 -0.34
48 AT5G64480 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.66 0.32 -0.31
49 AT5G56130 Transducin/WD40 repeat-like superfamily protein AtTEX1, TEX1, THO3 0.65 0.33 -0.32
50 AT5G60860 RAB GTPase homolog A1F RAB GTPase homolog A1F, RAB GTPase
homolog A1F		 0.65 0.31 -0.33
51 AT1G23750 Nucleic acid-binding, OB-fold-like protein 0.65 0.31 -0.3
52 AT4G08280 Thioredoxin superfamily protein 0.65 0.33 -0.31
53 AT5G46500 BEST Arabidopsis thaliana protein match is: disease
resistance protein (TIR-NBS-LRR class) family
(TAIR:AT5G46260.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.65 0.31 -0.32
54 AT5G27670 histone H2A 7 histone H2A 7 0.65 0.3 -0.32
55 AT4G29285 low-molecular-weight cysteine-rich 24 low-molecular-weight cysteine-rich
24		 -0.65 0.31 -0.33
56 AT1G55190 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F2, PRA7 0.65 0.32 -0.3
57 AT5G02070 Protein kinase family protein -0.65 0.32 -0.32
58 AT1G65270 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 13 growth stages; Has
149 Blast hits to 149 proteins in 49 species: Archae - 0;
Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.65 0.3 -0.31
59 AT5G42690 Protein of unknown function, DUF547 -0.65 0.32 -0.31
60 AT1G57680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Uncharacterised conserved protein UCP031277
(InterPro:IPR016971); Has 70 Blast hits to 70 proteins in
19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 0.65 0.31 -0.31
61 AT4G20450 Leucine-rich repeat protein kinase family protein 0.64 0.29 -0.33
62 AT4G12920 Eukaryotic aspartyl protease family protein UNDEAD -0.64 0.31 -0.31
63 AT3G62880 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 ATOEP16-4 0.64 0.33 -0.31
64 AT3G07440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G48530.1); Has 37 Blast hits
to 37 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.64 0.32 -0.32
65 AT5G51700 protein binding;zinc ion binding ATRAR1, PPHB SUSCEPTIBLE 2,
Required for Mla12 resistance 1,
RPR2		 0.64 0.3 -0.3
66 AT5G25360 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32342.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.64 0.32 -0.3
67 AT3G46070 C2H2-type zinc finger family protein -0.64 0.3 -0.3
68 AT5G46300 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.64 0.31 -0.29
69 AT5G02380 metallothionein 2B metallothionein 2B 0.64 0.32 -0.31
70 AT2G35160 SU(VAR)3-9 homolog 5 SET DOMAIN-CONTAINING PROTEIN 9,
SU(VAR)3-9 homolog 5		 -0.64 0.32 -0.33
71 AT5G17690 like heterochromatin protein (LHP1) AtLHP1, LIKE HETEROCHROMATIN
PROTEIN 1, TERMINAL FLOWER 2		 -0.63 0.33 -0.31
72 AT2G38490 CBL-interacting protein kinase 22 CBL-interacting protein kinase 22,
SNF1-RELATED PROTEIN KINASE 3.19		 -0.63 0.33 -0.32
73 AT5G44330 Tetratricopeptide repeat (TPR)-like superfamily protein -0.63 0.3 -0.31
74 AT3G42460 transposable element gene -0.62 0.32 -0.32
75 AT4G32860 unknown protein; Has 46 Blast hits to 46 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.31 -0.32
76 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.62 0.33 -0.32
77 AT3G25930 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.62 0.33 -0.32
78 AT3G50250 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G19270.1); Has 6 Blast hits to
5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.61 0.32 -0.32
79 AT5G07510 glycine-rich protein 14 ARABIDOPSIS THALIANA GLYCINE-RICH
PROTEIN 4, ARABIDOPSIS THALIANA
GLYCINE-RICH PROTEIN 14,
GLYCINE-RICH PROTEIN 4,
glycine-rich protein 14		 -0.61 0.32 -0.31
80 AT5G05160 Leucine-rich repeat protein kinase family protein REDUCED IN LATERAL GROWTH1 -0.61 0.32 -0.32
81 AT2G37360 ABC-2 type transporter family protein ATP-binding cassette G2 -0.61 0.32 -0.31
82 AT5G51680 hydroxyproline-rich glycoprotein family protein -0.6 0.3 -0.31
83 AT4G25010 Nodulin MtN3 family protein AtSWEET14, SWEET14 -0.6 0.3 -0.31
84 AT3G54270 sucrose-6F-phosphate phosphohydrolase family protein -0.6 0.33 -0.3
85 AT5G13150 exocyst subunit exo70 family protein C1 exocyst subunit exo70 family
protein C1, exocyst subunit exo70
family protein C1		 -0.6 0.31 -0.33
86 AT3G17010 AP2/B3-like transcriptional factor family protein -0.59 0.32 -0.31
87 AT3G49760 basic leucine-zipper 5 basic leucine-zipper 5, basic
leucine-zipper 5		 -0.59 0.33 -0.33
88 AT2G32360 Ubiquitin-like superfamily protein -0.59 0.34 -0.32
89 AT2G04025 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 3 -0.59 0.31 -0.32
90 AT2G03260 EXS (ERD1/XPR1/SYG1) family protein -0.58 0.33 -0.33
91 AT1G64100 pentatricopeptide (PPR) repeat-containing protein -0.58 0.32 -0.32
92 AT2G16260 pseudogene of glycine-rich RNA-binding protein glycine-rich RNA-binding protein 1 -0.58 0.32 -0.31
93 AT3G13280 Putative endonuclease or glycosyl hydrolase -0.58 0.33 -0.33
94 AT1G63190 Cystatin/monellin superfamily protein -0.58 0.3 -0.32
95 AT2G47670 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.57 0.3 -0.33
96 AT5G39640 Putative endonuclease or glycosyl hydrolase -0.57 0.3 -0.34
97 AT5G54350 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast; BEST
Arabidopsis thaliana protein match is: C2H2-like zinc
finger protein (TAIR:AT5G54360.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.57 0.31 -0.33
98 AT2G35170 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 -0.57 0.32 -0.31
99 AT3G22350 F-box and associated interaction domains-containing protein -0.57 0.32 -0.32
100 AT5G39380 Plant calmodulin-binding protein-related -0.57 0.3 -0.34
101 AT1G66550 WRKY DNA-binding protein 67 ATWRKY67, WRKY DNA-binding protein
67		 -0.57 0.33 -0.29
102 AT3G15605 nucleic acid binding -0.56 0.32 -0.34
103 AT4G15460 glycine-rich protein -0.56 0.32 -0.32