AT4G05160 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G05160
Description AMP-dependent synthetase and ligase family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G05160 AMP-dependent synthetase and ligase family protein 1 0.3 -0.3
2 AT1G64900 cytochrome P450, family 89, subfamily A, polypeptide 2 CYP89, cytochrome P450, family 89,
subfamily A, polypeptide 2		 0.87 0.31 -0.29
3 AT3G47810 Calcineurin-like metallo-phosphoesterase superfamily
protein		 ATVPS29, MAIGO 1, VACUOLAR PROTEIN
SORTING 29		 0.84 0.32 -0.31
4 AT1G76390 ARM repeat superfamily protein plant U-box 43 0.83 0.32 -0.32
5 AT1G77510 PDI-like 1-2 PROTEIN DISULFIDE ISOMERASE 6,
PDI-like 1-2, PROTEIN DISULFIDE
ISOMERASE 6, PDI-like 1-2		 0.83 0.32 -0.3
6 AT4G13360 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 0.83 0.35 -0.32
7 AT3G21790 UDP-Glycosyltransferase superfamily protein 0.82 0.3 -0.32
8 AT1G09140 SERINE-ARGININE PROTEIN 30 Serine/Arginine-Rich Protein
Splicing Factor 30,
SERINE-ARGININE PROTEIN 30,
ATSRP30.1, ATSRP30.2,
Serine/Arginine-Rich Protein
Splicing Factor 30		 0.82 0.3 -0.31
9 AT3G16330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits
to 109 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.81 0.31 -0.32
10 AT3G61200 Thioesterase superfamily protein 0.81 0.33 -0.32
11 AT5G47760 2-phosphoglycolate phosphatase 2 2-phosphoglycolate phosphatase 2,
ATPK5, PGLP2, 2-phosphoglycolate
phosphatase 2		 0.81 0.32 -0.33
12 AT3G03720 cationic amino acid transporter 4 cationic amino acid transporter 4 0.81 0.3 -0.32
13 AT5G44240 aminophospholipid ATPase 2 aminophospholipid ATPase 2 0.8 0.31 -0.31
14 AT1G76060 LYR family of Fe/S cluster biogenesis protein EMBRYO DEFECTIVE 1793 0.8 0.32 -0.33
15 AT3G12620 Protein phosphatase 2C family protein 0.8 0.31 -0.3
16 AT2G25110 stromal cell-derived factor 2-like protein precursor Arabidopsis thaliana STROMAL
CELL-DERIVED FACTOR 2-like protein
precursor, ATSDF2-LIKE, stromal
cell-derived factor 2-like protein
precursor		 0.8 0.32 -0.29
17 AT5G04930 aminophospholipid ATPase 1 aminophospholipid ATPase 1 0.8 0.31 -0.34
18 AT5G33290 xylogalacturonan deficient 1 xylogalacturonan deficient 1 0.8 0.29 -0.32
19 AT1G05940 cationic amino acid transporter 9 cationic amino acid transporter 9 0.79 0.32 -0.35
20 AT4G03960 Phosphotyrosine protein phosphatases superfamily protein AtPFA-DSP4, plant and fungi
atypical dual-specificity
phosphatase 4		 0.79 0.32 -0.34
21 AT2G22780 peroxisomal NAD-malate dehydrogenase 1 peroxisomal NAD-malate
dehydrogenase 1		 0.79 0.31 -0.31
22 AT5G63680 Pyruvate kinase family protein 0.79 0.3 -0.33
23 AT2G43820 UDP-glucosyltransferase 74F2 Arabidopsis thaliana salicylic
acid glucosyltransferase 1, GT,
salicylic acid glucosyltransferase
1, UDP-glucose:salicylic acid
glucosyltransferase 1,
UDP-glucosyltransferase 74F2		 0.79 0.33 -0.28
24 AT1G69930 glutathione S-transferase TAU 11 glutathione S-transferase TAU 11,
glutathione S-transferase TAU 11		 0.79 0.3 -0.3
25 AT5G19670 Exostosin family protein -0.78 0.31 -0.3
26 AT1G02470 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.78 0.31 -0.34
27 AT4G24690 ubiquitin-associated (UBA)/TS-N domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein		 Arabidopsis thaliana next to BRCA1
gene 1, next to BRCA1 gene 1		 0.78 0.34 -0.31
28 AT5G43280 delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
DELTA(3,5),DELTA(2,4)-DIENOYL-COA
ISOMERASE 1		 0.78 0.31 -0.34
29 AT5G65940 beta-hydroxyisobutyryl-CoA hydrolase 1 beta-hydroxyisobutyryl-CoA
hydrolase 1		 0.78 0.3 -0.34
30 AT5G62710 Leucine-rich repeat protein kinase family protein -0.77 0.3 -0.32
31 AT2G17220 Protein kinase superfamily protein kinase 3 0.77 0.34 -0.33
32 AT1G70810 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.77 0.31 -0.32
33 AT1G79810 Pex2/Pex12 N-terminal domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein		 ARABIDOPSIS PEROXIN 2, PEROXIN 2,
REVERSAL OF THE DET PHENOTYPE 3		 0.77 0.3 -0.34
34 AT2G46390 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 4 Blast hits to 4
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 succinate dehydrogenase 8 0.77 0.32 -0.31
35 AT1G30360 Early-responsive to dehydration stress protein (ERD4) early-responsive to dehydration 4 -0.77 0.31 -0.28
36 AT1G27980 dihydrosphingosine phosphate lyase ATDPL1, dihydrosphingosine
phosphate lyase		 0.76 0.31 -0.3
37 AT5G09470 dicarboxylate carrier 3 dicarboxylate carrier 3 0.76 0.35 -0.31
38 AT5G06260 TLD-domain containing nucleolar protein 0.76 0.31 -0.31
39 AT5G19530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ACAULIS 5 -0.76 0.33 -0.33
40 AT1G69880 thioredoxin H-type 8 thioredoxin H-type 8, thioredoxin
H-type 8		 0.76 0.31 -0.34
41 AT3G57030 Calcium-dependent phosphotriesterase superfamily protein -0.76 0.32 -0.31
42 AT2G43080 P4H isoform 1 P4H isoform 1 0.76 0.3 -0.3
43 AT1G26690 emp24/gp25L/p24 family/GOLD family protein 0.76 0.31 -0.32
44 AT2G13560 NAD-dependent malic enzyme 1 NAD-dependent malic enzyme 1 0.75 0.32 -0.31
45 AT1G33260 Protein kinase superfamily protein 0.75 0.31 -0.3
46 AT2G33740 Nitrogen regulatory PII-like, alpha/beta CUTA 0.75 0.32 -0.3
47 AT1G23190 Phosphoglucomutase/phosphomannomutase family protein phosphoglucomutase 3 0.75 0.34 -0.32
48 AT4G23680 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.75 0.33 -0.31
49 AT3G51430 Calcium-dependent phosphotriesterase superfamily protein STRICTOSIDINE SYNTHASE-LIKE 5,
YELLOW-LEAF-SPECIFIC GENE 2		 0.75 0.3 -0.31
50 AT2G40200 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.75 0.31 -0.33
51 AT1G05000 Phosphotyrosine protein phosphatases superfamily protein AtPFA-DSP1, plant and fungi
atypical dual-specificity
phosphatase 1		 0.75 0.29 -0.31
52 AT2G32520 alpha/beta-Hydrolases superfamily protein 0.74 0.35 -0.3
53 AT3G63080 glutathione peroxidase 5 glutathione peroxidase 5,
glutathione peroxidase 5, maternal
effect embryo arrest 42		 0.74 0.34 -0.32
54 AT1G66200 glutamine synthase clone F11 glutamine synthase clone F11,
glutamine synthetase 1;2,
glutamine synthase clone F11		 0.74 0.33 -0.33
55 AT2G27580 A20/AN1-like zinc finger family protein 0.74 0.32 -0.32
56 AT1G66250 O-Glycosyl hydrolases family 17 protein -0.74 0.32 -0.31
57 AT1G14990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.74 0.31 -0.31
58 AT5G55930 oligopeptide transporter 1 ARABIDOPSIS THALIANA OLIGOPEPTIDE
TRANSPORTER 1, oligopeptide
transporter 1		 0.74 0.34 -0.3
59 AT5G01010 CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has
172 Blast hits to 172 proteins in 43 species: Archae - 0;
Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses
- 0; Other Eukaryotes - 14 (source: NCBI BLink).		 0.74 0.3 -0.33
60 AT5G42850 Thioredoxin superfamily protein 0.74 0.31 -0.3
61 AT5G59420 OSBP(oxysterol binding protein)-related protein 3C OSBP(oxysterol binding
protein)-related protein 3C		 0.74 0.32 -0.32
62 AT4G23850 AMP-dependent synthetase and ligase family protein long-chain acyl-CoA synthetase 4 0.74 0.31 -0.29
63 AT4G23010 UDP-galactose transporter 2 ATUTR2, UDP-galactose transporter
2		 0.74 0.33 -0.32
64 AT1G54200 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits
to 581 proteins in 136 species: Archae - 0; Bacteria - 72;
Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other
Eukaryotes - 620 (source: NCBI BLink).		 -0.73 0.3 -0.33
65 AT5G56580 MAP kinase kinase 6 ARABIDOPSIS NQK1, ARABIDOPSIS
THALIANA MAP KINASE KINASE 6, MAP
kinase kinase 6		 -0.73 0.32 -0.3
66 AT5G40740 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.73 0.32 -0.31
67 AT4G33400 Vacuolar import/degradation, Vid27-related protein -0.72 0.32 -0.32
68 AT2G24230 Leucine-rich repeat protein kinase family protein -0.72 0.32 -0.3
69 AT3G08030 Protein of unknown function, DUF642 -0.72 0.31 -0.32
70 AT4G29080 phytochrome-associated protein 2 indole-3-acetic acid inducible 27,
phytochrome-associated protein 2		 -0.71 0.31 -0.31
71 AT1G28110 serine carboxypeptidase-like 45 serine carboxypeptidase-like 45 -0.71 0.31 -0.33
72 AT1G77250 RING/FYVE/PHD-type zinc finger family protein -0.71 0.3 -0.32
73 AT1G04240 AUX/IAA transcriptional regulator family protein indole-3-acetic acid inducible 3,
SHORT HYPOCOTYL 2		 -0.71 0.33 -0.34
74 AT5G37010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT1G65710.1); Has 6746 Blast hits to 5259
proteins in 486 species: Archae - 7; Bacteria - 485;
Metazoa - 3508; Fungi - 577; Plants - 378; Viruses - 50;
Other Eukaryotes - 1741 (source: NCBI BLink).		 -0.71 0.32 -0.3
75 AT1G72230 Cupredoxin superfamily protein -0.71 0.33 -0.28
76 AT1G72310 RING/U-box superfamily protein ATL3 -0.7 0.31 -0.32
77 AT5G65700 Leucine-rich receptor-like protein kinase family protein BARELY ANY MERISTEM 1 -0.7 0.33 -0.32
78 AT3G60900 FASCICLIN-like arabinogalactan-protein 10 FASCICLIN-like
arabinogalactan-protein 10		 -0.7 0.33 -0.33
79 AT5G20885 RING/U-box superfamily protein -0.69 0.36 -0.33
80 AT1G09450 Protein kinase superfamily protein AtHaspin, Haspin-related gene -0.68 0.33 -0.31
81 AT3G18524 MUTS homolog 2 ATMSH2, MUTS homolog 2 -0.68 0.33 -0.32
82 AT3G54350 Forkhead-associated (FHA) domain-containing protein embryo defective 1967 -0.68 0.3 -0.32
83 AT1G47670 Transmembrane amino acid transporter family protein -0.67 0.32 -0.31
84 AT1G35730 pumilio 9 pumilio 9, pumilio 9 -0.66 0.33 -0.32
85 AT2G21050 like AUXIN RESISTANT 2 like AUXIN RESISTANT 2 -0.66 0.3 -0.33
86 AT4G35730 Regulator of Vps4 activity in the MVB pathway protein -0.66 0.33 -0.31
87 AT2G27590 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.66 0.33 -0.31
88 AT2G33310 auxin-induced protein 13 auxin-induced protein 13 -0.65 0.31 -0.34
89 AT2G45820 Remorin family protein -0.64 0.3 -0.31
90 AT1G61840 Cysteine/Histidine-rich C1 domain family protein -0.64 0.3 -0.3
91 AT3G43210 ATP binding microtubule motor family protein ARABIDOPSIS NPK1-ACTIVATING
KINESIN 2, NPK1-ACTIVATING KINESIN
2, TETRASPORE		 -0.64 0.32 -0.31
92 AT4G25490 C-repeat/DRE binding factor 1 ATCBF1, C-repeat/DRE binding
factor 1, DRE BINDING PROTEIN 1B		 -0.64 0.3 -0.31
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
93 C0117 Hydroxyproline (2S,4R)-Hydroxyproline 4-Hydroxy-L-proline protein precursor 0.75 0.45 -0.47 C0117