AT4G04560 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G04560
Description transposable element gene
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G04560 transposable element gene 1 0.31 -0.29
2 AT2G05200 transposable element gene -0.78 0.34 -0.32
3 AT5G41640 Protein of unknown function (DUF626) -0.75 0.31 -0.33
4 AT1G58300 heme oxygenase 4 heme oxygenase 4 -0.73 0.32 -0.31
5 AT5G42560 Abscisic acid-responsive (TB2/DP1, HVA22) family protein 0.73 0.32 -0.32
6 AT5G10120 Ethylene insensitive 3 family protein -0.72 0.31 -0.33
7 AT2G16210 Transcriptional factor B3 family protein -0.72 0.3 -0.31
8 AT1G55300 TBP-associated factor 7 TBP-associated factor 7 0.71 0.3 -0.3
9 AT5G60280 Concanavalin A-like lectin protein kinase family protein -0.71 0.31 -0.32
10 AT1G59535 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.7 0.33 -0.29
11 AT2G04330 transposable element gene -0.7 0.33 -0.32
12 AT3G66656 AGAMOUS-like 91 AGAMOUS-like 91 0.7 0.33 -0.33
13 AT4G01710 ARP2/3 complex 16 kDa subunit (p16-Arc) ARPC5, CROOKED 0.7 0.32 -0.31
14 AT1G74490 Protein kinase superfamily protein -0.7 0.31 -0.32
15 AT4G25350 EXS (ERD1/XPR1/SYG1) family protein SHORT HYPOCOTYL UNDER BLUE1 -0.7 0.32 -0.31
16 AT2G31100 alpha/beta-Hydrolases superfamily protein -0.69 0.31 -0.32
17 AT3G43880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G07526.3); Has 32 Blast hits
to 32 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.29 -0.33
18 AT4G05280 transposable element gene -0.69 0.33 -0.31
19 AT1G65810 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.69 0.32 -0.33
20 AT4G11530 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 cysteine-rich RLK (RECEPTOR-like
protein kinase) 34		 -0.69 0.31 -0.34
21 AT2G11360 transposable element gene -0.68 0.31 -0.3
22 AT2G06820 transposable element gene -0.68 0.31 -0.3
23 AT4G08420 transposable element gene 0.68 0.3 -0.31
24 AT5G65510 AINTEGUMENTA-like 7 AINTEGUMENTA-like 7, PLETHORA 7 -0.68 0.31 -0.32
25 AT5G24130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: petal, leaf whorl, flower;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.68 0.3 -0.29
26 AT5G05130 DNA/RNA helicase protein -0.68 0.31 -0.29
27 AT2G35890 calcium-dependent protein kinase 25 calcium-dependent protein kinase
25		 0.68 0.34 -0.3
28 AT3G21175 ZIM-like 1 GATA TRANSCRIPTION FACTOR 24,
TIFY2B, ZIM LIKE 1, ZIM-like 1		 0.68 0.32 -0.31
29 AT1G05070 Protein of unknown function (DUF1068) 0.68 0.32 -0.33
30 AT3G09750 Galactose oxidase/kelch repeat superfamily protein -0.68 0.32 -0.33
31 AT2G01790 TRAF-like family protein -0.67 0.32 -0.33
32 AT3G42960 TAPETUM 1 ASD, TAPETUM 1, TAPETUM1 -0.67 0.34 -0.33
33 AT1G63590 Receptor-like protein kinase-related family protein 0.67 0.3 -0.31
34 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.67 0.29 -0.32
35 AT5G52160 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.67 0.3 -0.33
36 AT5G12460 Protein of unknown function (DUF604) -0.67 0.32 -0.31
37 AT4G22770 AT hook motif DNA-binding family protein -0.67 0.31 -0.31
38 AT5G12050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13980.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.67 0.31 -0.31
39 AT3G04420 NAC domain containing protein 48 NAC domain containing protein 48,
NAC domain containing protein 48		 -0.67 0.31 -0.32
40 AT1G53790 F-box and associated interaction domains-containing protein -0.67 0.33 -0.33
41 AT2G36760 UDP-glucosyl transferase 73C2 UDP-glucosyl transferase 73C2 -0.67 0.3 -0.32
42 AT1G43260 hAT transposon superfamily protein -0.67 0.31 -0.3
43 AT1G09930 oligopeptide transporter 2 oligopeptide transporter 2,
oligopeptide transporter 2		 0.67 0.32 -0.33
44 AT3G12840 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.67 0.33 -0.31
45 AT3G42430 transposable element gene 0.66 0.31 -0.32
46 AT5G57720 AP2/B3-like transcriptional factor family protein -0.66 0.32 -0.32
47 AT5G14180 Myzus persicae-induced lipase 1 Myzus persicae-induced lipase 1 -0.66 0.32 -0.31
48 AT1G69990 Leucine-rich repeat protein kinase family protein -0.66 0.3 -0.31
49 AT5G51690 1-amino-cyclopropane-1-carboxylate synthase 12 1-amino-cyclopropane-1-carboxylate
synthase 12		 -0.66 0.3 -0.33
50 AT5G37610 Eukaryotic porin family protein -0.66 0.32 -0.3
51 AT4G19370 Protein of unknown function (DUF1218) -0.66 0.31 -0.32
52 AT5G64480 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.66 0.3 -0.32
53 AT1G59950 NAD(P)-linked oxidoreductase superfamily protein -0.66 0.33 -0.31
54 AT4G03640 transposable element gene -0.65 0.33 -0.31
55 AT1G56290 CwfJ-like family protein 0.65 0.29 -0.3
56 AT1G14070 fucosyltransferase 7 fucosyltransferase 7 -0.65 0.3 -0.32
57 AT5G25820 Exostosin family protein -0.65 0.32 -0.29
58 AT2G19700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.65 0.32 -0.32
59 AT5G14300 prohibitin 5 prohibitin 5, prohibitin 5 0.65 0.32 -0.32
60 AT1G22420 hydroxyproline-rich glycoprotein family protein -0.65 0.31 -0.31
61 AT4G29285 low-molecular-weight cysteine-rich 24 low-molecular-weight cysteine-rich
24		 -0.65 0.31 -0.33
62 AT4G09100 RING/U-box superfamily protein -0.65 0.35 -0.28
63 AT2G24070 Family of unknown function (DUF566) QWRF domain containing 4 -0.65 0.32 -0.31
64 AT1G79780 Uncharacterised protein family (UPF0497) -0.65 0.32 -0.34
65 AT3G45630 RNA binding (RRM/RBD/RNP motifs) family protein -0.65 0.32 -0.32
66 AT5G02280 SNARE-like superfamily protein 0.65 0.31 -0.31
67 AT2G36010 E2F transcription factor 3 ATE2FA, E2F transcription factor 3 0.65 0.32 -0.31
68 AT5G12450 FBD-like domain family protein -0.64 0.3 -0.32
69 AT3G54270 sucrose-6F-phosphate phosphohydrolase family protein -0.64 0.33 -0.32
70 AT4G15200 formin 3 formin 3, formin 3 0.64 0.33 -0.33
71 AT1G43570 transposable element gene -0.64 0.32 -0.32
72 AT2G20880 Integrase-type DNA-binding superfamily protein AtERF53, ERF domain 53 -0.64 0.35 -0.32
73 AT2G26390 Serine protease inhibitor (SERPIN) family protein -0.64 0.31 -0.33
74 AT4G10880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G10870.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.64 0.3 -0.33
75 AT1G69010 BES1-interacting Myc-like protein 2 BES1-interacting Myc-like protein
2		 0.64 0.34 -0.35
76 AT1G20120 GDSL-like Lipase/Acylhydrolase superfamily protein -0.64 0.33 -0.32
77 AT4G13820 Leucine-rich repeat (LRR) family protein -0.64 0.33 -0.32
78 AT1G20550 O-fucosyltransferase family protein -0.64 0.29 -0.34
79 AT5G24280 gamma-irradiation and mitomycin c induced 1 GAMMA-IRRADIATION AND MITOMYCIN C
INDUCED 1		 -0.64 0.32 -0.3
80 AT2G03320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.64 0.31 -0.32
81 AT3G26870 Plant self-incompatibility protein S1 family -0.64 0.31 -0.35
82 AT3G43760 transposable element gene -0.64 0.31 -0.32
83 AT2G36060 MMS ZWEI homologue 3 MMS ZWEI homologue 3, UBIQUITIN E2
VARIANT 1C		 0.63 0.32 -0.31
84 AT4G08330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast
hits to 98 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.3 -0.32
85 AT2G23360 Plant protein of unknown function (DUF869) -0.63 0.3 -0.31
86 AT3G47850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 12 growth stages; Has 57 Blast hits to 57 proteins
in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12;
Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7
(source: NCBI BLink).		 0.63 0.32 -0.31
87 AT5G59590 UDP-glucosyl transferase 76E2 UDP-glucosyl transferase 76E2 -0.63 0.33 -0.32
88 AT2G23480 transposable element gene 0.63 0.31 -0.33
89 AT5G46310 WRKY family transcription factor -0.63 0.33 -0.31
90 AT4G04650 RNA-directed DNA polymerase (reverse transcriptase)-related
family protein		 -0.63 0.29 -0.33
91 AT1G69170 Squamosa promoter-binding protein-like (SBP domain)
transcription factor family protein		 -0.62 0.31 -0.3
92 AT5G03060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G11100.2); Has 14506 Blast
hits to 10808 proteins in 1083 species: Archae - 280;
Bacteria - 2737; Metazoa - 4707; Fungi - 940; Plants - 571;
Viruses - 106; Other Eukaryotes - 5165 (source: NCBI
BLink).		 -0.62 0.31 -0.31
93 AT1G55200 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 -0.62 0.31 -0.34
94 AT3G24460 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 -0.62 0.32 -0.31
95 AT2G30430 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.32 -0.3
96 AT3G25280 Major facilitator superfamily protein -0.62 0.32 -0.3
97 AT5G13380 Auxin-responsive GH3 family protein -0.62 0.31 -0.3
98 AT5G13150 exocyst subunit exo70 family protein C1 exocyst subunit exo70 family
protein C1, exocyst subunit exo70
family protein C1		 -0.62 0.31 -0.3
99 AT2G36710 Pectin lyase-like superfamily protein 0.62 0.32 -0.31
100 AT3G25850 Cysteine/Histidine-rich C1 domain family protein 0.62 0.35 -0.32
101 AT2G21240 basic pentacysteine 4 BASIC PENTACYSTEINE 4, BBR, basic
pentacysteine 4		 0.62 0.32 -0.32
102 AT5G64905 elicitor peptide 3 precursor elicitor peptide 3 precursor -0.62 0.28 -0.3
103 AT3G51880 high mobility group B1 AtHMGB1, high mobility group B1,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D1		 0.62 0.31 -0.3
104 AT1G33280 NAC domain containing protein 15 NAC domain containing protein 15,
BEARSKIN 1, NAC domain containing
protein 15		 -0.62 0.3 -0.31
105 AT2G45930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G16090.1); Has 161 Blast hits to
161 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.31 -0.3
106 AT5G07680 NAC domain containing protein 80 Arabidopsis NAC domain containing
protein 79, NAC domain containing
protein 80, ATNAC4, NAC domain
containing protein 80		 -0.62 0.31 -0.35
107 AT1G09940 Glutamyl-tRNA reductase family protein HEMA2 -0.62 0.33 -0.32
108 AT3G43630 Vacuolar iron transporter (VIT) family protein -0.62 0.31 -0.33
109 AT3G43100 transposable element gene -0.61 0.29 -0.35
110 AT1G22970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G71150.1); Has 134 Blast hits
to 132 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 66; Fungi - 10; Plants - 48; Viruses - 0; Other
Eukaryotes - 10 (source: NCBI BLink).		 0.61 0.31 -0.31
111 AT2G31780 RING/U-box superfamily protein ARIADNE 11, ARABIDOPSIS ARIADNE 11 -0.61 0.32 -0.3
112 AT3G11460 Pentatricopeptide repeat (PPR) superfamily protein -0.61 0.31 -0.34
113 AT5G52340 exocyst subunit exo70 family protein A2 exocyst subunit exo70 family
protein A2, exocyst subunit exo70
family protein A2		 0.61 0.33 -0.33
114 AT3G22990 ARM repeat superfamily protein LEAF AND FLOWER RELATED 0.61 0.31 -0.32
115 AT3G55160 unknown protein; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2428, death-receptor-like
(InterPro:IPR019442); Has 357 Blast hits to 330 proteins in
163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi
- 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45
(source: NCBI BLink).		 -0.61 0.32 -0.31
116 AT5G39860 basic helix-loop-helix (bHLH) DNA-binding family protein BASIC HELIX-LOOP-HELIX PROTEIN
136, BANQUO 1, PACLOBUTRAZOL
RESISTANCE1		 0.61 0.32 -0.34
117 AT3G60760 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.61 0.33 -0.31
118 AT3G05520 Subunits of heterodimeric actin filament capping protein
Capz superfamily		 0.61 0.29 -0.31
119 AT2G29770 Galactose oxidase/kelch repeat superfamily protein -0.61 0.31 -0.32
120 AT5G64690 neurofilament triplet H protein-related -0.61 0.31 -0.32
121 AT1G49150 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.61 0.33 -0.31
122 AT2G20100 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.61 0.31 -0.33
123 AT1G17410 Nucleoside diphosphate kinase family protein 0.61 0.28 -0.31
124 AT1G33870 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.61 0.32 -0.33
125 AT4G34850 Chalcone and stilbene synthase family protein LESS ADHESIVE POLLEN 5 -0.61 0.3 -0.32
126 AT1G54110 Membrane fusion protein Use1 0.61 0.33 -0.3
127 AT2G02830 transposable element gene -0.61 0.31 -0.34
128 AT2G46940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits
to 141 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.33 -0.33
129 AT5G28070 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.61 0.31 -0.33
130 AT1G48180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.3 -0.32
131 AT4G16570 protein arginine methyltransferase 7 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 7,
protein arginine methyltransferase
7		 -0.61 0.34 -0.31
132 AT3G52130 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.6 0.32 -0.32
133 AT3G51520 diacylglycerol acyltransferase family 0.6 0.32 -0.31
134 AT5G13530 protein kinases;ubiquitin-protein ligases KEEP ON GOING 0.6 0.31 -0.31
135 AT5G37880 transposable element gene 0.6 0.32 -0.3
136 AT4G12530 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.6 0.33 -0.33
137 AT5G10810 enhancer of rudimentary protein, putative ARABIDOPSIS THALIANA ENHANCER OF
RUDIMENTARY HOMOLOGUE, ENHANCER OF
RUDIMENTARY HOMOLOGUE		 0.6 0.34 -0.33
138 AT5G51230 VEFS-Box of polycomb protein AtEMF2, CYR1, EMBRYONIC FLOWER 2,
CYTOKININ RESISTANT 1		 0.6 0.34 -0.33
139 AT3G21550 DUF679 domain membrane protein 2 Arabidopsis thaliana DUF679 domain
membrane protein 2, DUF679 domain
membrane protein 2		 0.6 0.32 -0.32
140 AT4G09540 transposable element gene 0.6 0.32 -0.31
141 AT1G14570 UBX domain-containing protein 0.59 0.32 -0.34
142 AT5G26140 Putative lysine decarboxylase family protein ATLOG9, LONELY GUY 9 0.59 0.32 -0.33
143 AT1G61410 DNA double-strand break repair and VJ recombination XRCC4 0.59 0.3 -0.28
144 AT3G32280 ATP-dependent helicase family protein 0.59 0.34 -0.32