AT4G04410 : -
Query Information
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AGICode AT4G04410
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G04410 transposable element gene 1 0.31 -0.3
2 AT4G29230 NAC domain containing protein 75 NAC domain containing protein 75,
NAC domain containing protein 75		 -0.77 0.32 -0.3
3 AT3G20570 early nodulin-like protein 9 AtENODL9, early nodulin-like
protein 9		 -0.77 0.34 -0.3
4 AT5G48370 Thioesterase/thiol ester dehydrase-isomerase superfamily
protein		 -0.76 0.32 -0.3
5 AT1G48620 high mobility group A5 high mobility group A5 -0.76 0.31 -0.32
6 AT2G28690 Protein of unknown function (DUF1635) 0.74 0.34 -0.33
7 AT2G27140 HSP20-like chaperones superfamily protein -0.74 0.34 -0.3
8 AT5G25760 peroxin4 peroxin4, ubiquitin-conjugating
enzyme 21		 -0.73 0.32 -0.33
9 AT3G62660 galacturonosyltransferase-like 7 galacturonosyltransferase-like 7 -0.73 0.31 -0.31
10 AT5G65090 DNAse I-like superfamily protein BRISTLED 1, DEFORMED ROOT HAIRS 4,
MRH3		 0.73 0.32 -0.29
11 AT5G36250 Protein phosphatase 2C family protein -0.73 0.29 -0.31
12 AT3G57070 Glutaredoxin family protein -0.72 0.32 -0.32
13 AT3G43670 Copper amine oxidase family protein 0.72 0.33 -0.31
14 AT2G19830 SNF7 family protein SNF7.2, VPS32 -0.72 0.33 -0.3
15 AT1G69690 TCP family transcription factor AtTCP15, TEOSINTE
BRANCHED1/CYCLOIDEA/PCF 15		 -0.72 0.32 -0.32
16 AT2G36250 Tubulin/FtsZ family protein ATFTSZ2-1, FTSZ2-1 -0.72 0.32 -0.31
17 AT1G07745 homolog of RAD51 D ATRAD51D, homolog of RAD51 D,
SUPPRESOR OF SNI1		 -0.71 0.33 -0.33
18 AT3G10760 Homeodomain-like superfamily protein -0.71 0.31 -0.31
19 AT1G66150 transmembrane kinase 1 transmembrane kinase 1 -0.7 0.3 -0.32
20 AT1G02050 Chalcone and stilbene synthase family protein LESS ADHESIVE POLLEN 6 0.7 0.3 -0.31
21 AT1G17250 receptor like protein 3 receptor like protein 3, receptor
like protein 3		 0.7 0.33 -0.31
22 AT4G17170 RAB GTPase homolog B1C AT-RAB2, ARABIDOPSIS RAB GTPASE
HOMOLOG B1B, ATRAB2A, ATRABB1C,
RAB GTPASE HOMOLOG B1B, RAB2A, RAB
GTPase homolog B1C		 -0.69 0.31 -0.32
23 AT2G42450 alpha/beta-Hydrolases superfamily protein 0.69 0.33 -0.31
24 AT4G35590 RWP-RK domain-containing protein RWP-RK domain-containing 5 0.69 0.3 -0.31
25 AT3G12250 TGACG motif-binding factor 6 BZIP45, TGACG motif-binding factor
6		 -0.69 0.33 -0.33
26 AT2G21600 endoplasmatic reticulum retrieval protein 1B endoplasmatic reticulum retrieval
protein 1B, endoplasmatic
reticulum retrieval protein 1B		 -0.69 0.3 -0.32
27 AT1G43800 Plant stearoyl-acyl-carrier-protein desaturase family
protein		 0.68 0.32 -0.32
28 AT5G10950 Tudor/PWWP/MBT superfamily protein -0.68 0.32 -0.32
29 AT5G25820 Exostosin family protein 0.68 0.32 -0.29
30 AT3G06650 ATP-citrate lyase B-1 ATP-citrate lyase B-1 -0.68 0.32 -0.31
31 AT1G69850 nitrate transporter 1:2 nitrate transporter 1:2, nitrate
transporter 1:2, NTL1		 0.68 0.33 -0.32
32 AT1G71000 Chaperone DnaJ-domain superfamily protein -0.68 0.31 -0.3
33 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1		 0.68 0.34 -0.3
34 AT4G31760 Peroxidase superfamily protein 0.68 0.31 -0.3
35 AT5G25160 zinc finger protein 3 zinc finger protein 3 0.68 0.32 -0.32
36 AT5G39850 Ribosomal protein S4 0.68 0.31 -0.3
37 AT3G14050 RELA/SPOT homolog 2 RELA-SPOT HOMOLOG 2, RELA/SPOT
HOMOLOG 2, RELA/SPOT homolog 2		 -0.67 0.32 -0.31
38 AT5G62640 proline-rich family protein AtELF5, EARLY FLOWERING 5 -0.67 0.33 -0.29
39 AT2G43690 Concanavalin A-like lectin protein kinase family protein 0.67 0.31 -0.32
40 AT2G38590 F-box and associated interaction domains-containing protein 0.67 0.32 -0.31
41 AT5G61500 autophagy 3 (APG3) ATATG3, ATG3 -0.67 0.33 -0.34
42 AT1G49370 pseudogene, similar to OSJNBa0072F16.8, blastp match of 42%
identity and 6.6e-73 P-value to
GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza
sativa (japonica cultivar-group)}		 0.66 0.31 -0.29
43 AT3G23930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: hypocotyl; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G13540.1); Has 10639 Blast hits to 7432 proteins
in 646 species: Archae - 82; Bacteria - 826; Metazoa -
5047; Fungi - 759; Plants - 314; Viruses - 86; Other
Eukaryotes - 3525 (source: NCBI BLink).		 0.66 0.3 -0.32
44 AT2G20580 26S proteasome regulatory subunit S2 1A 26S PROTEASOME REGULATORY SUBUNIT
S2 1A, 26S proteasome regulatory
subunit S2 1A		 -0.66 0.33 -0.32
45 AT1G28375 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: petal, leaf whorl,
sepal, flower; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; Has 8 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.66 0.31 -0.33
46 AT3G45440 Concanavalin A-like lectin protein kinase family protein 0.66 0.32 -0.34
47 AT4G39100 PHD finger family protein / bromo-adjacent homology (BAH)
domain-containing protein		 short life -0.66 0.32 -0.32
48 AT1G78300 general regulatory factor 2 14-3-3 PROTEIN G-BOX FACTOR14
OMEGA, GF14 OMEGA, general
regulatory factor 2		 -0.66 0.3 -0.3
49 AT1G33000 transposable element gene 0.66 0.32 -0.32
50 AT5G39440 SNF1-related protein kinase 1.3 SNF1-related protein kinase 1.3 0.66 0.31 -0.31
51 AT2G29410 metal tolerance protein B1 ATMTPB1, metal tolerance protein
B1		 -0.66 0.31 -0.3
52 AT1G56010 NAC domain containing protein 1 Arabidopsis NAC domain containing
protein 21, Arabidopsis NAC domain
containing protein 22, NAC domain
containing protein 1		 0.66 0.33 -0.33
53 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1		 0.66 0.34 -0.32
54 AT1G21920 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 0.66 0.33 -0.31
55 AT1G64050 unknown protein; Has 524 Blast hits to 342 proteins in 101
species: Archae - 0; Bacteria - 106; Metazoa - 106; Fungi -
24; Plants - 25; Viruses - 0; Other Eukaryotes - 263
(source: NCBI BLink).		 -0.66 0.32 -0.31
56 AT1G14400 ubiquitin carrier protein 1 ATUBC1, ubiquitin carrier protein
1, UBIQUITIN CONJUGATING ENZYME 1		 -0.66 0.31 -0.3
57 AT4G22770 AT hook motif DNA-binding family protein 0.66 0.3 -0.3
58 AT1G56300 Chaperone DnaJ-domain superfamily protein -0.66 0.3 -0.32
59 AT3G04420 NAC domain containing protein 48 NAC domain containing protein 48,
NAC domain containing protein 48		 0.66 0.32 -0.31
60 AT3G26220 cytochrome P450, family 71, subfamily B, polypeptide 3 cytochrome P450, family 71,
subfamily B, polypeptide 3		 0.66 0.32 -0.33
61 AT4G39800 myo-inositol-1-phosphate synthase 1 INOSITOL 3-PHOSPHATE SYNTHASE 1,
MYO-INOSITOL-1-PHOSPHATE SYNTHASE
1, MI-1-P SYNTHASE, D-myo-Inositol
3-Phosphate Synthase 1,
myo-inositol-1-phosphate synthase
1		 -0.66 0.33 -0.31
62 AT1G77820 transposable element gene 0.65 0.32 -0.32
63 AT2G34090 maternal effect embryo arrest 18 maternal effect embryo arrest 18 -0.65 0.31 -0.31
64 AT5G03415 Transcription factor DP ATDPB, DPB -0.65 0.31 -0.3
65 AT5G11740 arabinogalactan protein 15 arabinogalactan protein 15,
ATAGP15		 -0.65 0.3 -0.32
66 AT1G21710 8-oxoguanine-DNA glycosylase 1 ARABIDOPSIS 8-OXOGUANINE-DNA
GLYCOSYLASE 1, 8-oxoguanine-DNA
glycosylase 1		 0.65 0.31 -0.32
67 AT2G07560 H(+)-ATPase 6 H(+)-ATPase 6, H(+)-ATPase 6 -0.65 0.31 -0.31
68 AT1G34780 APR-like 4 APR-like 4, APR-like 4 -0.65 0.32 -0.31
69 AT3G11490 rac GTPase activating protein -0.65 0.33 -0.33
70 AT1G28200 FH interacting protein 1 FH interacting protein 1 -0.65 0.32 -0.32
71 AT2G14020 transposable element gene 0.65 0.3 -0.33
72 AT1G17730 vacuolar protein sorting 46.1 CHARGED MULTIVESICULAR BODY
PROTEIN/CHROMATIN MODIFYING
PROTEIN1B, vacuolar protein
sorting 46.1		 -0.65 0.34 -0.31
73 AT5G02650 BEST Arabidopsis thaliana protein match is: Telomerase
activating protein Est1 (TAIR:AT1G28260.2); Has 20 Blast
hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.3 -0.32
74 AT1G74640 alpha/beta-Hydrolases superfamily protein -0.64 0.32 -0.32
75 AT4G08330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast
hits to 98 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.31 -0.3
76 AT1G31440 SH3 domain-containing protein -0.64 0.31 -0.31
77 AT4G03570 Cystatin/monellin superfamily protein 0.64 0.31 -0.3
78 AT5G45830 delay of germination 1 ATDOG1, DELAY OF GERMINATION 1,
GLUCOSE SENSING QTL 5		 -0.64 0.32 -0.3
79 AT1G34220 Regulator of Vps4 activity in the MVB pathway protein -0.64 0.32 -0.32
80 AT2G29600 Galactose oxidase/kelch repeat superfamily protein -0.64 0.32 -0.3
81 AT1G10400 UDP-Glycosyltransferase superfamily protein 0.64 0.32 -0.3
82 AT1G74350 Intron maturase, type II family protein 0.64 0.32 -0.32
83 AT5G09950 Tetratricopeptide repeat (TPR)-like superfamily protein -0.63 0.34 -0.29
84 AT3G19340 Protein of unknown function (DUF3754) -0.63 0.32 -0.32
85 AT1G48670 auxin-responsive GH3 family protein 0.63 0.33 -0.31
86 AT3G11850 Protein of unknown function, DUF593 -0.63 0.29 -0.31
87 AT5G06440 BEST Arabidopsis thaliana protein match is: Polyketide
cyclase/dehydrase and lipid transport superfamily protein
(TAIR:AT3G11720.3); Has 155 Blast hits to 153 proteins in
39 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi -
6; Plants - 101; Viruses - 0; Other Eukaryotes - 39
(source: NCBI BLink).		 -0.63 0.32 -0.29
88 AT1G63310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits
to 77 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.31 -0.31
89 AT5G11530 embryonic flower 1 (EMF1) embryonic flower 1 -0.63 0.29 -0.31
90 AT5G39860 basic helix-loop-helix (bHLH) DNA-binding family protein BASIC HELIX-LOOP-HELIX PROTEIN
136, BANQUO 1, PACLOBUTRAZOL
RESISTANCE1		 -0.63 0.32 -0.32
91 AT2G27380 extensin proline-rich 1 extensin proline-rich 1, extensin
proline-rich 1		 0.63 0.31 -0.35
92 AT4G23920 UDP-D-glucose/UDP-D-galactose 4-epimerase 2 UDP-GLC 4-EPIMERASE 2,
UDP-D-glucose/UDP-D-galactose
4-epimerase 2		 -0.63 0.31 -0.3
93 AT1G72390 CONTAINS InterPro DOMAIN/s: Spt20 family
(InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins
in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198;
Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes
- 1797 (source: NCBI BLink).		 -0.63 0.3 -0.32
94 AT5G54855 Pollen Ole e 1 allergen and extensin family protein -0.63 0.33 -0.33
95 AT3G45730 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.63 0.32 -0.35
96 AT1G69010 BES1-interacting Myc-like protein 2 BES1-interacting Myc-like protein
2		 -0.63 0.29 -0.32
97 AT3G50190 Plant protein of unknown function (DUF247) 0.62 0.35 -0.32
98 AT2G44230 Plant protein of unknown function (DUF946) -0.62 0.32 -0.3
99 AT3G16800 Protein phosphatase 2C family protein -0.62 0.33 -0.32
100 AT1G07310 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.62 0.32 -0.34
101 AT5G58440 sorting nexin 2A sorting nexin 2A -0.62 0.31 -0.33
102 AT1G20480 AMP-dependent synthetase and ligase family protein -0.62 0.31 -0.32
103 AT2G06310 transposable element gene -0.62 0.31 -0.31
104 AT3G03230 alpha/beta-Hydrolases superfamily protein 0.62 0.32 -0.32
105 AT2G46200 unknown protein; Has 2968 Blast hits to 2381 proteins in
310 species: Archae - 16; Bacteria - 188; Metazoa - 1070;
Fungi - 227; Plants - 145; Viruses - 4; Other Eukaryotes -
1318 (source: NCBI BLink).		 0.62 0.3 -0.33
106 AT5G09290 Inositol monophosphatase family protein 0.62 0.31 -0.3
107 AT2G02800 protein kinase 2B protein kinase 2B, kinase 2 -0.62 0.31 -0.32
108 AT2G30960 unknown protein; Has 4906 Blast hits to 2903 proteins in
334 species: Archae - 5; Bacteria - 381; Metazoa - 1639;
Fungi - 509; Plants - 244; Viruses - 5; Other Eukaryotes -
2123 (source: NCBI BLink).		 -0.62 0.3 -0.31
109 AT1G15460 HCO3- transporter family ARABIDOPSIS THALIANA REQUIRES HIGH
BORON 4, REQUIRES HIGH BORON 4		 0.62 0.32 -0.31
110 AT1G75760 ER lumen protein retaining receptor family protein 0.62 0.3 -0.31
111 AT2G17350 unknown protein; Has 119 Blast hits to 93 proteins in 40
species: Archae - 0; Bacteria - 3; Metazoa - 18; Fungi -
12; Plants - 44; Viruses - 0; Other Eukaryotes - 42
(source: NCBI BLink).		 -0.62 0.32 -0.33
112 AT4G14230 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.62 0.31 -0.33
113 AT3G15040 Protein of unknown function, DUF584 -0.62 0.32 -0.3
114 AT1G51990 O-methyltransferase family protein 0.62 0.31 -0.29
115 AT1G34750 Protein phosphatase 2C family protein 0.62 0.31 -0.31
116 AT4G17760 damaged DNA binding;exodeoxyribonuclease IIIs -0.61 0.3 -0.32
117 AT1G79510 Uncharacterized conserved protein (DUF2358) -0.61 0.31 -0.3
118 AT1G59750 auxin response factor 1 auxin response factor 1 -0.61 0.32 -0.31
119 AT1G18700 DNAJ heat shock N-terminal domain-containing protein -0.61 0.31 -0.32
120 AT1G03470 Kinase interacting (KIP1-like) family protein -0.61 0.28 -0.32
121 AT5G21010 BTB-POZ and MATH domain 5 BTB-POZ AND MATH DOMAIN 5, BTB-POZ
and MATH domain 5		 -0.61 0.3 -0.3
122 AT5G07480 KAR-UP oxidoreductase 1 KAR-UP oxidoreductase 1 0.61 0.29 -0.32
123 AT5G14080 Tetratricopeptide repeat (TPR)-like superfamily protein 0.61 0.32 -0.3
124 AT3G61970 AP2/B3-like transcriptional factor family protein NGATHA2 -0.61 0.33 -0.29
125 AT5G45380 solute:sodium symporters;urea transmembrane transporters ATDUR3, DEGRADATION OF UREA 3 0.61 0.3 -0.31
126 AT5G14860 UDP-Glycosyltransferase superfamily protein -0.61 0.31 -0.31
127 AT3G61260 Remorin family protein -0.61 0.33 -0.31
128 AT1G76930 extensin 4 EXTENSIN 1, extensin 4, extensin
1, extensin 4, OBP3-RESPONSIVE
GENE 5		 0.61 0.33 -0.34
129 AT1G56450 20S proteasome beta subunit G1 20S proteasome beta subunit G1 -0.61 0.33 -0.31
130 AT5G19580 glyoxal oxidase-related protein -0.61 0.3 -0.3
131 AT2G31910 cation/H+ exchanger 21 cation/H+ exchanger 21, cation/H+
exchanger 21		 0.61 0.31 -0.32
132 AT5G66240 Transducin/WD40 repeat-like superfamily protein 0.61 0.31 -0.31
133 AT3G03410 EF hand calcium-binding protein family -0.61 0.32 -0.32
134 AT4G19620 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.61 0.32 -0.3
135 AT1G47660 unknown protein; Has 5165 Blast hits to 2753 proteins in
450 species: Archae - 12; Bacteria - 1193; Metazoa - 731;
Fungi - 361; Plants - 761; Viruses - 176; Other Eukaryotes
- 1931 (source: NCBI BLink).		 0.61 0.32 -0.33
136 AT5G04590 sulfite reductase sulfite reductase 0.61 0.33 -0.33
137 AT5G01550 lectin receptor kinase a4.1 lectin receptor kinase a4.1 0.61 0.32 -0.32
138 AT1G02130 RAS 5 RAS 5, ARABIDOPSIS RAS 5,
ARABIDOPSIS THALIANA RESPONSIVE TO
ABSCISIC ACID 1B, ARABIDOPSIS
THALIANA RAB D2A, RAS 5, RAB D2A		 -0.61 0.31 -0.32
139 AT4G00390 DNA-binding storekeeper protein-related transcriptional
regulator		 0.6 0.33 -0.3
140 AT3G46710 NB-ARC domain-containing disease resistance protein 0.6 0.3 -0.31
141 AT3G42320 transposable element gene 0.6 0.33 -0.33
142 AT3G12160 RAB GTPase homolog A4D ARABIDOPSIS THALIANA RAB GTPASE
HOMOLOG A4D, RAB GTPase homolog
A4D		 0.6 0.34 -0.32
143 AT5G05460 Glycosyl hydrolase family 85 AtENGase85A,
Endo-beta-N-acetyglucosaminidase
85A		 0.6 0.32 -0.33
144 AT5G37610 Eukaryotic porin family protein 0.6 0.31 -0.32
145 AT1G55610 BRI1 like BRI1 like 0.6 0.34 -0.34
146 AT1G31820 Amino acid permease family protein 0.6 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
147 C0089 Fortunellin - - - -0.75 0.45 -0.45
148 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		-0.72 0.43 -0.45 C0233
149 C0082 Digalactosyldiacylglycerol-36:3 - Digalactosyldiacylglycerol-36:3 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.7 0.47 -0.47 C0082
150 C0248 Sulfoquinovosyldiacylglycerol-36:3 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis -0.7 0.51 -0.49 C0248
151 C0229 Robinin - - flavone biosynthesis -0.67 0.43 -0.45