AT4G04000 : -
Query Information
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AGICode AT4G04000
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G04000 transposable element gene 1 0.3 -0.32
2 AT5G52130 unknown protein; Has 10 Blast hits to 10 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.31 -0.33
3 AT2G37000 TCP family transcription factor -0.66 0.34 -0.32
4 AT3G20180 Copper transport protein family -0.65 0.32 -0.33
5 AT2G42090 actin 9 actin 9 0.65 0.31 -0.31
6 AT3G14395 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.64 0.3 -0.3
7 AT3G21380 Mannose-binding lectin superfamily protein 0.64 0.32 -0.3
8 ATMG00660 hypothetical protein ORF149 0.63 0.32 -0.3
9 AT3G57850 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: embryo, synergid; EXPRESSED DURING: C
globular stage; BEST Arabidopsis thaliana protein match is:
Plant self-incompatibility protein S1 family
(TAIR:AT3G57840.1); Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.29 -0.3
10 AT1G22015 Galactosyltransferase family protein DD46 -0.61 0.32 -0.32
11 AT5G38130 HXXXD-type acyl-transferase family protein -0.6 0.32 -0.29
12 AT3G14340 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.6 0.31 -0.34
13 AT5G46150 LEM3 (ligand-effect modulator 3) family protein / CDC50
family protein		 -0.59 0.3 -0.34
14 AT4G28560 ROP-interactive CRIB motif-containing protein 7 ROP-interactive CRIB
motif-containing protein 7		 0.59 0.32 -0.33
15 AT5G33350 pseudogene, similar to P0406H10.5, nucleoid DNA-binding
protein cnd41, chloroplast - Nicotiana tabacum, PIR:T01996;
blastp match of 37% identity and 1.5e-57 P-value to
GP|9711879|dbj|BAB07973.1||AP002524 P0406H10.5 {Oryza
sativa (japonica cultivar-group)}		 -0.59 0.29 -0.31
16 AT5G17830 Plasma-membrane choline transporter family protein -0.59 0.31 -0.32
17 AT4G20250 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.58 0.32 -0.32
18 AT1G59980 ARG1-like 2 ARG1-like 2, ATDJC39, gravity
persistence signal 4		 -0.58 0.31 -0.31
19 AT3G60240 eukaryotic translation initiation factor 4G CUCUMOVIRUS MULTIPLICATION 2,
eukaryotic translation initiation
factor 4G		 0.58 0.31 -0.3
20 AT2G25230 myb domain protein 100 myb domain protein 100, myb domain
protein 100		 -0.57 0.32 -0.31
21 AT2G03500 Homeodomain-like superfamily protein -0.57 0.3 -0.29
22 AT2G20030 RING/U-box superfamily protein 0.57 0.35 -0.29
23 AT2G24830 zinc finger (CCCH-type) family protein / D111/G-patch
domain-containing protein		 -0.57 0.34 -0.31
24 AT5G41730 Protein kinase family protein 0.56 0.31 -0.31
25 ATMG00670 hypothetical protein ORF275 0.56 0.32 -0.3
26 AT3G50990 Peroxidase superfamily protein 0.56 0.34 -0.32
27 AT1G73430 sec34-like family protein 0.56 0.32 -0.3
28 ATMG01200 hypothetical protein ORF294 0.55 0.32 -0.32
29 AT3G14470 NB-ARC domain-containing disease resistance protein -0.55 0.33 -0.31
30 ATMG01360 cytochrome oxidase cytochrome oxidase 0.55 0.33 -0.32
31 AT3G59440 Calcium-binding EF-hand family protein 0.55 0.32 -0.3
32 AT4G29980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: leaf whorl, sepal, flower, seed;
EXPRESSED DURING: petal differentiation and expansion
stage, E expanded cotyledon stage; BEST Arabidopsis
thaliana protein match is: Fasciclin-like arabinogalactan
family protein (TAIR:AT1G30800.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.55 0.32 -0.32
33 AT1G65760 Protein of unknown function (DUF295) 0.55 0.3 -0.32
34 AT3G11350 Pentatricopeptide repeat (PPR) superfamily protein 0.54 0.31 -0.32
35 AT1G02490 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.54 0.32 -0.31
36 AT2G35030 Pentatricopeptide repeat (PPR) superfamily protein 0.54 0.31 -0.32
37 AT4G39370 ubiquitin-specific protease 27 ubiquitin-specific protease 27 -0.54 0.32 -0.32
38 AT1G43840 transposable element gene 0.54 0.31 -0.31
39 AT5G48780 disease resistance protein (TIR-NBS class) 0.54 0.3 -0.34
40 AT2G02140 low-molecular-weight cysteine-rich 72 low-molecular-weight cysteine-rich
72, PDF2.6		 0.54 0.32 -0.32
41 AT1G48390 RNI-like superfamily protein -0.54 0.32 -0.34
42 AT1G68320 myb domain protein 62 myb domain protein 62, BW62B,
BW62C, myb domain protein 62		 0.54 0.32 -0.32
43 AT5G24860 flowering promoting factor 1 ARABIDOPSIS FLOWERING PROMOTING
FACTOR 1, FLOWERING PROMOTING
FACTOR 1		 0.53 0.33 -0.31
44 ATMG01020 hypothetical protein ORF153B 0.53 0.31 -0.29
45 AT5G27810 MADS-box transcription factor family protein -0.53 0.32 -0.35
46 AT4G15230 pleiotropic drug resistance 2 ATP-binding cassette G30, ATPDR2,
pleiotropic drug resistance 2		 0.53 0.32 -0.33
47 AT1G06270 Pentatricopeptide repeat (PPR) superfamily protein 0.53 0.31 -0.32
48 AT5G36930 Disease resistance protein (TIR-NBS-LRR class) family -0.53 0.3 -0.31
49 AT1G30795 Glycine-rich protein family 0.52 0.33 -0.31
50 AT3G47250 Plant protein of unknown function (DUF247) -0.52 0.29 -0.33
51 AT4G40070 RING/U-box superfamily protein 0.52 0.31 -0.3
52 AT3G09180 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27
(InterPro:IPR021627); Has 112 Blast hits to 112 proteins in
38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi -
0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 -0.52 0.33 -0.32
53 AT2G23230 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.52 0.3 -0.29
54 AT1G04660 glycine-rich protein 0.52 0.31 -0.31
55 AT5G50180 Protein kinase superfamily protein -0.51 0.33 -0.32
56 AT5G62320 myb domain protein 99 myb domain protein 99, ATMYBCU15,
myb domain protein 99		 0.51 0.31 -0.31
57 AT1G53000 Nucleotide-diphospho-sugar transferases superfamily protein AtCKS, CMP-KDO synthetase, KDSB -0.51 0.31 -0.32
58 AT4G21700 Protein of unknown function (DUF2921) 0.51 0.32 -0.3
59 AT3G43970 unknown protein; BEST Arabidopsis thaliana protein match
is: Protein of unknown function (DUF295)
(TAIR:AT5G53240.1); Has 56 Blast hits to 56 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.51 0.32 -0.31
60 AT1G26400 FAD-binding Berberine family protein -0.51 0.32 -0.28
61 AT3G60470 Plant protein of unknown function (DUF247) -0.51 0.3 -0.34
62 AT2G44630 Galactose oxidase/kelch repeat superfamily protein -0.5 0.31 -0.31
63 AT5G66020 Phosphoinositide phosphatase family protein SUPPRESSOR OF ACTIN 1B, SAC
DOMAIN-CONTAINING PROTEIN 6,
IMPAIRED IN BABA-INDUCED STERILITY
2, SUPPRESSOR OF ACTIN 1B		 -0.5 0.33 -0.31
64 AT4G24860 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.5 0.35 -0.31
65 AT1G76170 2-thiocytidine tRNA biosynthesis protein, TtcA -0.5 0.32 -0.32
66 AT2G11010 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion; BEST
Arabidopsis thaliana protein match is: myosin heavy
chain-related (TAIR:AT5G32590.1); Has 404 Blast hits to 390
proteins in 105 species: Archae - 10; Bacteria - 61;
Metazoa - 184; Fungi - 25; Plants - 79; Viruses - 0; Other
Eukaryotes - 45 (source: NCBI BLink).		 -0.5 0.29 -0.34
67 AT2G07280 unknown protein; Has 19 Blast hits to 19 proteins in 3
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.5 0.32 -0.35
68 AT2G11235 transposable element gene -0.5 0.31 -0.34
69 AT5G28810 Domain of unknown function (DUF1985) -0.5 0.31 -0.31
70 AT1G04380 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.5 0.33 -0.3
71 AT3G56000 cellulose synthase like A14 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE LIKE A14, cellulose
synthase like A14		 0.49 0.3 -0.31
72 AT3G08500 myb domain protein 83 myb domain protein 83, myb domain
protein 83		 -0.49 0.32 -0.34
73 AT2G26510 Xanthine/uracil permease family protein pigment defective embryo 135 0.49 0.29 -0.32
74 AT1G32260 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35480.1); Has 48 Blast
hits to 48 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.49 0.3 -0.33
75 AT2G25150 HXXXD-type acyl-transferase family protein 0.49 0.31 -0.28
76 AT5G56510 pumilio 12 pumilio 12, pumilio 12 -0.49 0.34 -0.34
77 AT4G16470 Tetratricopeptide repeat (TPR)-like superfamily protein -0.49 0.32 -0.31
78 AT5G51360 Transcription elongation factor (TFIIS) family protein 0.48 0.3 -0.33
79 AT1G68580 agenet domain-containing protein / bromo-adjacent homology
(BAH) domain-containing protein		 0.48 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
80 C0241 Stigmasterol 3-O-β-D-glucoside - Stigmasterol 3-O-β-D-glucoside - 0.77 0.51 -0.51 C0241