AT4G03090 : -
Query Information
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AGICode AT4G03090
Description sequence-specific DNA binding;sequence-specific DNA binding transcription factors
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G03090 sequence-specific DNA binding;sequence-specific DNA binding
transcription factors		 1 0.3 -0.33
2 AT1G68270 AMP-dependent synthetase and ligase family protein 0.65 0.32 -0.31
3 AT3G01880 Plant protein of unknown function (DUF946) 0.62 0.33 -0.31
4 AT2G39650 Protein of unknown function (DUF506) -0.62 0.32 -0.33
5 AT4G34330 Protein of unknown function (DUF677) 0.61 0.31 -0.32
6 AT2G36920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02870.1); Has 13 Blast hits to 11
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.61 0.31 -0.29
7 AT2G41100 Calcium-binding EF hand family protein ARABIDOPSIS THALIANA CALMODULIN
LIKE 4, TOUCH 3		 -0.61 0.31 -0.31
8 AT5G03920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03930.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.6 0.33 -0.33
9 AT5G47850 CRINKLY4 related 4 CRINKLY4 related 4 -0.6 0.29 -0.32
10 AT4G30970 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.6 0.33 -0.33
11 AT1G76650 calmodulin-like 38 calmodulin-like 38 -0.59 0.32 -0.32
12 AT3G44260 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 CCR4- associated factor 1a, CCR4-
associated factor 1a		 -0.59 0.3 -0.31
13 AT2G21120 Protein of unknown function (DUF803) -0.58 0.33 -0.29
14 AT1G22010 unknown protein; Has 12 Blast hits to 12 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.33 -0.33
15 AT1G05740 Eukaryotic protein of unknown function (DUF842) -0.57 0.32 -0.34
16 AT3G02460 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.57 0.3 -0.31
17 AT1G09070 soybean gene regulated by cold-2 SOYBEAN GENE REGULATED BY COLD-2,
soybean gene regulated by cold-2		 -0.57 0.3 -0.3
18 AT1G44090 gibberellin 20-oxidase 5 ARABIDOPSIS THALIANA GIBBERELLIN
20-OXIDASE 5, gibberellin
20-oxidase 5		 0.57 0.3 -0.31
19 AT5G50930 Histone superfamily protein -0.57 0.31 -0.3
20 AT2G35290 unknown protein; Has 39 Blast hits to 39 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.34 -0.3
21 AT2G45460 SMAD/FHA domain-containing protein 0.56 0.3 -0.3
22 AT2G44840 ethylene-responsive element binding factor 13 ETHYLENE-RESPONSIVE ELEMENT
BINDING FACTOR 13, EREBP,
ethylene-responsive element
binding factor 13		 -0.56 0.33 -0.31
23 AT5G30440 transposable element gene 0.56 0.33 -0.31
24 AT1G58390 Disease resistance protein (CC-NBS-LRR class) family -0.55 0.3 -0.32
25 AT3G42900 transposable element gene -0.55 0.31 -0.32
26 AT4G33610 glycine-rich protein -0.55 0.31 -0.32
27 AT1G44780 CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ
(InterPro:IPR019098); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G08310.1); Has 18105
Blast hits to 11200 proteins in 808 species: Archae - 37;
Bacteria - 1195; Metazoa - 7724; Fungi - 1727; Plants -
674; Viruses - 183; Other Eukaryotes - 6565 (source: NCBI
BLink).		 0.54 0.33 -0.3
28 AT3G03860 APR-like 5 APR-like 5, APR-like 5 -0.54 0.31 -0.33
29 AT3G04640 glycine-rich protein -0.54 0.33 -0.31
30 AT2G01220 Nucleotidylyl transferase superfamily protein -0.54 0.31 -0.31
31 AT1G32240 Homeodomain-like superfamily protein KANADI 2 0.54 0.32 -0.33
32 AT3G18700 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: cultured cell; BEST Arabidopsis
thaliana protein match is: autoinhibited Ca2+/ATPase II
(TAIR:AT1G13210.1); Has 223 Blast hits to 223 proteins in
38 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi -
0; Plants - 126; Viruses - 0; Other Eukaryotes - 5 (source:
NCBI BLink).		 -0.54 0.35 -0.3
33 AT5G32460 Transcriptional factor B3 family protein 0.54 0.29 -0.32
34 AT1G24450 Ribonuclease III family protein NUCLEAR FUSION DEFECTIVE 2 0.54 0.31 -0.32
35 AT1G35200 60S ribosomal protein L4/L1 (RPL4B), pseudogene, similar to
60S ribosomal protein L4 (fragment) GB:P49691 from
(Arabidopsis thaliana); blastp match of 50% identity and
6.3e-17 P-value to SP|Q9XF97|RL4_PRUAR 60S ribosomal
protein L4 (L1). (Apricot) {Prunus armeniaca}		 0.54 0.32 -0.3
36 AT5G37770 EF hand calcium-binding protein family CALMODULIN-LIKE 24, TOUCH 2 -0.53 0.32 -0.31
37 AT1G05460 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SILENCING DEFECTIVE 0.53 0.32 -0.34
38 AT3G28780 Protein of unknown function (DUF1216) 0.53 0.34 -0.29
39 AT3G03260 homeodomain GLABROUS 8 homeodomain GLABROUS 8 -0.53 0.34 -0.32
40 AT4G27280 Calcium-binding EF-hand family protein -0.53 0.32 -0.31
41 AT2G46505 succinate dehydrogenase subunit 4 succinate dehydrogenase subunit 4 -0.53 0.33 -0.34
42 AT5G39630 Vesicle transport v-SNARE family protein -0.53 0.29 -0.33
43 AT1G19580 gamma carbonic anhydrase 1 gamma carbonic anhydrase 1 -0.53 0.3 -0.32
44 AT1G27100 Actin cross-linking protein -0.53 0.3 -0.32
45 AT1G19210 Integrase-type DNA-binding superfamily protein -0.53 0.3 -0.29
46 AT4G22440 unknown protein; Has 11 Blast hits to 11 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.52 0.29 -0.31
47 AT2G44930 Plant protein of unknown function (DUF247) -0.52 0.33 -0.31
48 AT1G37160 transposable element gene 0.52 0.32 -0.31
49 AT3G11820 syntaxin of plants 121 AT-SYR1, ATSYP121, SYNTAXIN
RELATED PROTEIN 1, PENETRATION1,
syntaxin of plants 121, SYNTAXIN
RELATED PROTEIN 1		 -0.52 0.31 -0.32
50 AT1G09840 shaggy-like protein kinase 41 AtHIR1, shaggy-like protein kinase
41, hypersensitive induced
reaction 1, shaggy-like protein
kinase 41		 0.51 0.34 -0.3
51 AT5G07910 Leucine-rich repeat (LRR) family protein -0.51 0.31 -0.31
52 AT1G31080 F-box family protein -0.51 0.33 -0.3
53 AT2G37010 non-intrinsic ABC protein 12 non-intrinsic ABC protein 12,
non-intrinsic ABC protein 12		 -0.5 0.32 -0.32
54 AT2G15600 transposable element gene -0.5 0.29 -0.3
55 AT5G28420 Pentatricopeptide repeat (PPR) superfamily protein -0.5 0.32 -0.32
56 AT4G20910 double-stranded RNA binding protein-related / DsRBD
protein-related		 CORYMBOSA 2, HUA ENHANCER 1 0.5 0.3 -0.32
57 AT3G48030 hypoxia-responsive family protein / zinc finger (C3HC4-type
RING finger) family protein		 0.5 0.33 -0.33
58 AT3G10820 Transcription elongation factor (TFIIS) family protein -0.5 0.31 -0.33
59 AT1G63290 Aldolase-type TIM barrel family protein -0.5 0.31 -0.34
60 AT1G41820 unknown protein; Has 46 Blast hits to 46 proteins in 21
species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2;
Plants - 5; Viruses - 1; Other Eukaryotes - 24 (source:
NCBI BLink).		 -0.5 0.33 -0.32
61 AT5G54010 UDP-Glycosyltransferase superfamily protein 0.49 0.34 -0.33
62 AT5G19840 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.49 0.3 -0.29
63 AT5G66150 Glycosyl hydrolase family 38 protein -0.49 0.29 -0.31
64 AT5G51190 Integrase-type DNA-binding superfamily protein -0.49 0.33 -0.31
65 AT5G58782 Undecaprenyl pyrophosphate synthetase family protein -0.49 0.32 -0.3
66 AT3G55840 Hs1pro-1 protein -0.49 0.3 -0.32
67 AT4G17490 ethylene responsive element binding factor 6 ethylene responsive element
binding factor 6, ERF-6-6,
ethylene responsive element
binding factor 6		 -0.49 0.32 -0.31
68 AT4G29780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits
to 944 proteins in 87 species: Archae - 0; Bacteria - 0;
Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other
Eukaryotes - 18 (source: NCBI BLink).		 -0.49 0.3 -0.32
69 AT4G15250 B-box type zinc finger protein with CCT domain -0.49 0.31 -0.32
70 AT2G10090 transposable element gene 0.49 0.31 -0.33
71 AT5G06780 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML2, EMSY-like 2 -0.49 0.32 -0.32
72 AT5G60320 Concanavalin A-like lectin protein kinase family protein -0.48 0.33 -0.33
73 AT5G59730 exocyst subunit exo70 family protein H7 exocyst subunit exo70 family
protein H7, exocyst subunit exo70
family protein H7		 -0.48 0.34 -0.31
74 AT5G42380 calmodulin like 37 calmodulin like 37, CALMODULIN
LIKE 39		 -0.48 0.33 -0.32
75 AT2G28540 RNA binding (RRM/RBD/RNP motifs) family protein 0.48 0.31 -0.32
76 AT1G60020 transposable element gene 0.48 0.31 -0.32
77 AT4G27930 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.48 0.32 -0.32
78 AT3G52470 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.48 0.32 -0.33
79 AT2G10490 transposable element gene 0.48 0.31 -0.31
80 AT1G76780 HSP20-like chaperones superfamily protein 0.48 0.34 -0.3
81 AT5G51200 Protein of unknown function (DUF3414) EMBRYO DEFECTIVE 3142 0.48 0.32 -0.3
82 AT2G44250 Protein of Unknown Function (DUF239) 0.47 0.32 -0.29
83 AT1G04150 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 0.47 0.32 -0.29
84 AT2G24400 SAUR-like auxin-responsive protein family 0.47 0.32 -0.3
85 AT5G58520 Protein kinase superfamily protein 0.46 0.33 -0.33
86 AT1G60540 pseudogene of the dynamin family Dynamin related protein 4B 0.46 0.32 -0.32
87 AT2G28170 Cation/hydrogen exchanger family protein ATCHX7, CATION/H+ EXCHANGER 7 0.46 0.32 -0.31
88 AT4G09470 Encodes a ECA1 gametogenesis related family protein
[pseudogene]		 0.45 0.32 -0.32
89 AT2G45650 AGAMOUS-like 6 AGAMOUS-like 6 0.45 0.3 -0.32
90 AT4G05230 Ubiquitin-like superfamily protein 0.45 0.32 -0.31