AT4G03110 : RNA-binding protein-defense related 1
Query Information
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AGICode AT4G03110
Description RNA-binding protein-defense related 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G03110 RNA-binding protein-defense related 1 RNA-binding protein-defense
related 1, RNA-binding
protein-defense related 1		 1 0.31 -0.3
2 AT3G45850 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.84 0.32 -0.32
3 AT5G62150 peptidoglycan-binding LysM domain-containing protein -0.82 0.32 -0.3
4 AT2G18170 MAP kinase 7 MAP kinase 7, MAP kinase 7 -0.81 0.33 -0.33
5 AT1G23480 cellulose synthase-like A3 cellulose synthase-like A3,
ATCSLA3, CSLA03, cellulose
synthase-like A3, CELLULOSE
SYNTHASE-LIKE A3		 0.81 0.29 -0.3
6 AT2G21180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits
to 124 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.81 0.3 -0.31
7 AT3G04240 Tetratricopeptide repeat (TPR)-like superfamily protein secret agent -0.8 0.31 -0.3
8 AT1G18650 plasmodesmata callose-binding protein 3 plasmodesmata callose-binding
protein 3		 0.79 0.32 -0.32
9 AT3G62390 TRICHOME BIREFRINGENCE-LIKE 6 TRICHOME BIREFRINGENCE-LIKE 6 0.79 0.3 -0.31
10 AT4G34230 cinnamyl alcohol dehydrogenase 5 cinnamyl alcohol dehydrogenase 5,
cinnamyl alcohol dehydrogenase 5,
cinnamyl alcohol dehydrogenase 5		 -0.79 0.29 -0.33
11 AT4G27830 beta glucosidase 10 beta glucosidase 10 -0.79 0.3 -0.3
12 AT4G38660 Pathogenesis-related thaumatin superfamily protein 0.78 0.34 -0.32
13 AT3G06140 RING/U-box superfamily protein 0.78 0.31 -0.32
14 AT2G47930 arabinogalactan protein 26 arabinogalactan protein 26,
ARABIDOPSIS THALIANA
ARABINOGALACTAN PROTEIN 26		 0.77 0.32 -0.34
15 AT5G23850 Arabidopsis thaliana protein of unknown function (DUF821) -0.77 0.3 -0.32
16 AT1G05590 beta-hexosaminidase 2 BETA-HEXOSAMINIDASE 3,
beta-hexosaminidase 2		 0.77 0.3 -0.31
17 AT2G29460 glutathione S-transferase tau 4 glutathione S-transferase tau 4,
GLUTATHIONE S-TRANSFERASE 22,
glutathione S-transferase tau 4		 -0.77 0.3 -0.32
18 AT1G62520 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G12450.1); Has 388 Blast hits
to 388 proteins in 26 species: Archae - 0; Bacteria - 1;
Metazoa - 0; Fungi - 8; Plants - 376; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 0.76 0.31 -0.33
19 AT3G17350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.76 0.33 -0.29
20 AT3G06070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits
to 33 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.76 0.35 -0.31
21 AT3G06750 hydroxyproline-rich glycoprotein family protein 0.76 0.31 -0.33
22 AT5G57700 BNR/Asp-box repeat family protein 0.76 0.33 -0.3
23 AT5G51460 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 ATTPPA 0.76 0.32 -0.31
24 AT4G11600 glutathione peroxidase 6 glutathione peroxidase 6,
glutathione peroxidase 6, LSC803,
PHGPX		 -0.75 0.36 -0.31
25 AT1G29530 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G34310.3); Has 84 Blast hits
to 78 proteins in 24 species: Archae - 2; Bacteria - 4;
Metazoa - 9; Fungi - 8; Plants - 55; Viruses - 0; Other
Eukaryotes - 6 (source: NCBI BLink).		 0.75 0.31 -0.32
26 AT1G33030 O-methyltransferase family protein -0.75 0.29 -0.29
27 AT5G01015 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.75 0.31 -0.31
28 AT1G47740 PPPDE putative thiol peptidase family protein 0.75 0.32 -0.31
29 AT1G48370 YELLOW STRIPE like 8 YELLOW STRIPE like 8 -0.74 0.33 -0.32
30 AT5G06860 polygalacturonase inhibiting protein 1 POLYGALACTURONASE INHIBITING
PROTEIN 1, polygalacturonase
inhibiting protein 1		 -0.74 0.32 -0.31
31 AT2G41900 CCCH-type zinc finger protein with ARM repeat domain OXIDATIVE STRESS 2 -0.74 0.32 -0.29
32 AT2G04350 AMP-dependent synthetase and ligase family protein long-chain acyl-CoA synthetase 8 -0.74 0.32 -0.31
33 AT4G39900 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.74 0.33 -0.31
34 AT1G65690 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.74 0.33 -0.31
35 AT2G46780 RNA-binding (RRM/RBD/RNP motifs) family protein 0.73 0.31 -0.32
36 AT1G21670 LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller
(InterPro:IPR011659), Six-bladed beta-propeller, TolB-like
(InterPro:IPR011042); BEST Arabidopsis thaliana protein
match is: DPP6 N-terminal domain-like protein
(TAIR:AT1G21680.1); Has 8461 Blast hits to 5060 proteins in
1257 species: Archae - 79; Bacteria - 5567; Metazoa - 37;
Fungi - 70; Plants - 117; Viruses - 0; Other Eukaryotes -
2591 (source: NCBI BLink).		 -0.73 0.31 -0.33
37 AT4G34180 Cyclase family protein -0.73 0.33 -0.33
38 AT1G80060 Ubiquitin-like superfamily protein 0.73 0.31 -0.32
39 AT2G42900 Plant basic secretory protein (BSP) family protein 0.73 0.32 -0.31
40 AT2G46330 arabinogalactan protein 16 arabinogalactan protein 16,
ATAGP16		 0.73 0.32 -0.3
41 AT2G16890 UDP-Glycosyltransferase superfamily protein -0.73 0.33 -0.31
42 AT4G16440 ferredoxin hydrogenases -0.73 0.3 -0.31
43 AT2G01070 Lung seven transmembrane receptor family protein 0.72 0.31 -0.32
44 AT5G02370 ATP binding microtubule motor family protein 0.72 0.31 -0.33
45 AT1G04990 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.72 0.33 -0.3
46 AT3G53190 Pectin lyase-like superfamily protein 0.72 0.31 -0.31
47 AT5G58380 SOS3-interacting protein 1 CBL-INTERACTING PROTEIN KINASE 10,
PKS2, SOS3-interacting protein 1,
SNF1-RELATED PROTEIN KINASE 3.8		 -0.72 0.32 -0.33
48 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.72 0.33 -0.33
49 AT5G11110 sucrose phosphate synthase 2F sucrose phosphate synthase 2F,
KAONASHI 2, SUCROSE PHOSPHATE
SYNTHASE 1, sucrose phosphate
synthase 2F, sucrose-phosphate
synthase A2		 -0.72 0.33 -0.31
50 AT4G31420 Zinc finger protein 622 -0.72 0.33 -0.32
51 AT5G67480 BTB and TAZ domain protein 4 ATBT4, BTB and TAZ domain protein
4		 -0.72 0.33 -0.34
52 AT5G20830 sucrose synthase 1 ASUS1, atsus1, sucrose synthase 1 -0.72 0.33 -0.32
53 AT5G43450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.72 0.3 -0.32
54 AT5G15600 SPIRAL1-like4 SPIRAL1-like4 0.72 0.28 -0.31
55 AT4G20870 fatty acid hydroxylase 2 ARABIDOPSIS FATTY ACID HYDROXYLASE
2, fatty acid hydroxylase 2		 0.71 0.33 -0.33
56 AT4G18700 CBL-interacting protein kinase 12 WPL4-LIKE 4, CBL-interacting
protein kinase 12, SNF1-RELATED
PROTEIN KINASE 3.9, WPL4-LIKE 4		 -0.71 0.31 -0.32
57 AT1G06830 Glutaredoxin family protein 0.71 0.31 -0.32
58 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.71 0.33 -0.33
59 AT5G54960 pyruvate decarboxylase-2 pyruvate decarboxylase-2 -0.71 0.31 -0.31
60 AT3G12580 heat shock protein 70 ARABIDOPSIS HEAT SHOCK PROTEIN 70,
heat shock protein 70		 -0.71 0.35 -0.31
61 AT5G26770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G05830.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.71 0.31 -0.3
62 AT1G63260 tetraspanin10 tetraspanin10 0.71 0.32 -0.32
63 AT5G14220 Flavin containing amine oxidoreductase family HEMG2, MATERNAL EFFECT EMBRYO
ARREST 61, PPO2		 0.71 0.31 -0.33
64 AT3G46490 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.71 0.32 -0.33
65 AT2G30520 Phototropic-responsive NPH3 family protein ROOT PHOTOTROPISM 2 0.71 0.34 -0.31
66 AT5G67340 ARM repeat superfamily protein -0.7 0.31 -0.3
67 AT5G49390 LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 11 growth stages; BEST
Arabidopsis thaliana protein match is: binding
(TAIR:AT3G06670.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.7 0.32 -0.29
68 AT1G30620 NAD(P)-binding Rossmann-fold superfamily protein HIGH SUGAR RESPONSE8, MURUS 4,
UDP-D-XYLOSE 4-EPIMERASE 1		 -0.7 0.32 -0.31
69 AT5G50375 cyclopropyl isomerase cyclopropyl isomerase 0.7 0.32 -0.33
70 AT2G05160 CCCH-type zinc fingerfamily protein with RNA-binding domain 0.7 0.31 -0.31
71 AT3G18750 with no lysine (K) kinase 6 ARABIDOPSIS THALIANA WITH NO K 6,
with no lysine (K) kinase 6, ZIK5		 0.7 0.32 -0.31
72 AT3G04010 O-Glycosyl hydrolases family 17 protein -0.7 0.33 -0.33
73 AT4G22570 adenine phosphoribosyl transferase 3 adenine phosphoribosyl transferase
3		 0.7 0.34 -0.33
74 AT2G22260 oxidoreductase, 2OG-Fe(II) oxygenase family protein 0.7 0.33 -0.34
75 AT3G27300 glucose-6-phosphate dehydrogenase 5 glucose-6-phosphate dehydrogenase
5		 -0.7 0.31 -0.32
76 AT1G67970 heat shock transcription factor A8 AT-HSFA8, heat shock transcription
factor A8		 -0.7 0.33 -0.31
77 AT5G12010 unknown protein; INVOLVED IN: response to salt stress;
LOCATED IN: chloroplast, plasma membrane, membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.7 0.31 -0.33
78 AT4G02880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G03290.2); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.69 0.31 -0.3
79 AT5G06790 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, LP.02 two leaves
visible, petal differentiation and expansion stage, D
bilateral stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.69 0.3 -0.32
80 AT4G00480 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 ATMYC1, myc1 0.69 0.3 -0.32
81 AT3G59820 LETM1-like protein -0.69 0.33 -0.31
82 AT1G33970 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.69 0.3 -0.32
83 AT1G78610 mechanosensitive channel of small conductance-like 6 mechanosensitive channel of small
conductance-like 6		 -0.69 0.31 -0.32
84 AT2G16710 Iron-sulphur cluster biosynthesis family protein -0.69 0.31 -0.32
85 AT2G16700 actin depolymerizing factor 5 actin depolymerizing factor 5,
ATADF5		 -0.69 0.31 -0.32
86 AT5G28770 bZIP transcription factor family protein Arabidopsis thaliana basic leucine
zipper 63, BZO2H3		 0.68 0.34 -0.33
87 AT1G67960 CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV
receptor (InterPro:IPR008010); Has 447 Blast hits to 428
proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa
- 190; Fungi - 133; Plants - 49; Viruses - 0; Other
Eukaryotes - 75 (source: NCBI BLink).		 POLLEN DEFECTIVE IN GUIDANCE 1 -0.68 0.32 -0.29
88 AT5G28630 glycine-rich protein 0.68 0.3 -0.33
89 AT3G04070 NAC domain containing protein 47 NAC domain containing protein 47,
NAC domain containing protein 47		 -0.68 0.36 -0.3
90 AT3G52720 alpha carbonic anhydrase 1 alpha carbonic anhydrase 1, A.
THALIANA ALPHA CARBONIC ANHYDRASE
1, CARBONIC ANHYDRASE 1		 0.68 0.34 -0.33
91 AT5G22300 nitrilase 4 NITRILASE 4, nitrilase 4 -0.68 0.31 -0.33
92 AT5G50000 Protein kinase superfamily protein 0.68 0.33 -0.3
93 AT2G42380 Basic-leucine zipper (bZIP) transcription factor family
protein		 ATBZIP34, BZIP34 0.68 0.34 -0.32
94 AT3G26290 cytochrome P450, family 71, subfamily B, polypeptide 26 cytochrome P450, family 71,
subfamily B, polypeptide 26		 -0.68 0.3 -0.32
95 AT5G15530 biotin carboxyl carrier protein 2 biotin carboxyl carrier protein 2,
CAC1-B		 0.68 0.31 -0.32
96 AT4G02330 Plant invertase/pectin methylesterase inhibitor superfamily AtPME41, ATPMEPCRB, pectin
methylesterase 41		 -0.68 0.3 -0.32
97 AT3G27210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25
species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7;
Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source:
NCBI BLink).		 -0.68 0.33 -0.29
98 AT1G14900 high mobility group A high mobility group A 0.68 0.32 -0.32
99 AT4G17550 Major facilitator superfamily protein glycerol-3-phosphate permease 4,
glycerol-3-phosphate permease 4		 -0.68 0.33 -0.33
100 AT1G18890 calcium-dependent protein kinase 1 calcium-dependent protein kinase
1, AtCPK10, calcium-dependent
protein kinase 1, CPK10		 -0.67 0.32 -0.32
101 AT1G69870 nitrate transporter 1.7 nitrate transporter 1.7 -0.67 0.3 -0.29
102 AT4G31670 ubiquitin-specific protease 18 ubiquitin-specific protease 18 -0.67 0.31 -0.33
103 AT1G23800 aldehyde dehydrogenase 2B7 aldehyde dehydrogenase 2B,
aldehyde dehydrogenase 2B7		 -0.67 0.32 -0.34
104 AT2G23910 NAD(P)-binding Rossmann-fold superfamily protein -0.67 0.32 -0.31
105 AT1G47710 Serine protease inhibitor (SERPIN) family protein -0.67 0.32 -0.33
106 AT5G50380 exocyst subunit exo70 family protein F1 exocyst subunit exo70 family
protein F1, exocyst subunit exo70
family protein F1		 -0.66 0.31 -0.32
107 AT2G37040 PHE ammonia lyase 1 ATPAL1, PHE ammonia lyase 1 -0.66 0.33 -0.3
108 AT1G20693 high mobility group B2 HIGH MOBILITY GROUP BETA 1, high
mobility group B2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP D 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP D 2		 -0.66 0.31 -0.34
109 AT5G43980 plasmodesmata-located protein 1 plasmodesmata-located protein 1,
PLASMODESMATA-LOCATED PROTEIN 1A		 -0.66 0.32 -0.31
110 AT4G17410 DWNN domain, a CCHC-type zinc finger -0.66 0.32 -0.29
111 AT5G24470 pseudo-response regulator 5 pseudo-response regulator 5,
pseudo-response regulator 5		 -0.66 0.32 -0.31
112 AT4G12120 Sec1/munc18-like (SM) proteins superfamily ATSEC1B, SEC1B -0.66 0.29 -0.33
113 AT3G18830 polyol/monosaccharide transporter 5 POLYOL TRANSPORTER 5, ARABIDOPSIS
THALIANA POLYOL/MONOSACCHARIDE
TRANSPORTER 5,
polyol/monosaccharide transporter
5		 -0.66 0.29 -0.32
114 AT3G11910 ubiquitin-specific protease 13 AtUBP13, ubiquitin-specific
protease 13		 -0.66 0.3 -0.3
115 AT3G18280 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.66 0.3 -0.33
116 AT3G26830 Cytochrome P450 superfamily protein CYP71B15, PHYTOALEXIN DEFICIENT 3 -0.66 0.32 -0.32
117 AT5G47060 Protein of unknown function (DUF581) -0.66 0.34 -0.31
118 AT1G31830 Amino acid permease family protein -0.66 0.31 -0.32
119 AT3G47080 Tetratricopeptide repeat (TPR)-like superfamily protein -0.66 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
120 C0017 sn-Glycero-3-phosphocholine sn-Glycero-3-phosphocholine L-1-Glycero-3-phosphocholine - -0.84 0.46 -0.43 C0017