AT4G02380 : Arabidopsis thaliana late embryogenensis abundant like 5.....
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G02380
Description senescence-associated gene 21
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G02380 senescence-associated gene 21 Arabidopsis thaliana late
embryogenensis abundant like 5,
senescence-associated gene 21		 1 0.33 -0.3
2 AT3G48990 AMP-dependent synthetase and ligase family protein 0.82 0.31 -0.34
3 AT2G45210 SAUR-like auxin-responsive protein family 0.8 0.32 -0.32
4 AT2G42280 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.75 0.29 -0.32
5 AT4G15260 UDP-Glycosyltransferase superfamily protein 0.75 0.31 -0.32
6 AT1G36060 Integrase-type DNA-binding superfamily protein 0.72 0.33 -0.34
7 AT5G39590 TLD-domain containing nucleolar protein 0.72 0.34 -0.33
8 AT4G12470 azelaic acid induced 1 azelaic acid induced 1 0.71 0.31 -0.32
9 AT2G41230 unknown protein; Has 75 Blast hits to 75 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 ORGAN SIZE RELATED 1 0.7 0.3 -0.32
10 AT2G39660 botrytis-induced kinase1 botrytis-induced kinase1 0.7 0.32 -0.33
11 AT4G13660 pinoresinol reductase 2 ATPRR2, pinoresinol reductase 2 0.69 0.3 -0.33
12 AT2G22490 Cyclin D2;1 ATCYCD2;1, Cyclin D2;1 0.68 0.32 -0.31
13 AT5G14000 NAC domain containing protein 84 NAC domain containing protein 84,
NAC domain containing protein 84		 0.68 0.3 -0.32
14 AT1G07390 receptor like protein 1 receptor like protein 1, receptor
like protein 1		 0.68 0.32 -0.31
15 AT5G44390 FAD-binding Berberine family protein 0.67 0.33 -0.3
16 AT5G14780 formate dehydrogenase formate dehydrogenase 0.67 0.33 -0.3
17 AT3G02240 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 7 0.67 0.31 -0.32
18 AT5G20990 molybdopterin biosynthesis CNX1 protein / molybdenum
cofactor biosynthesis enzyme CNX1 (CNX1)		 B73, CHLORATE RESISTANT 6,
CO-FACTOR FOR NITRATE REDUCTASE
AND XANTHINE DEHYDROGENASE,
CO-FACTOR FOR NITRATE REDUCTASE
AND XANTHINE DEHYDROGENASE 1,
SIRTINOL 4		 0.67 0.32 -0.32
19 AT3G56170 Ca-2+ dependent nuclease Ca-2+ dependent nuclease 0.66 0.3 -0.31
20 AT2G40940 ethylene response sensor 1 ETHYLENE RESPONSE SENSOR, ethylene
response sensor 1		 0.66 0.31 -0.31
21 AT4G32650 potassium channel in Arabidopsis thaliana 3 ARABIDOPSIS THALIANA K+ RECTIFYING
CHANNEL 1, A. thaliana
low-K+-tolerant 1, potassium
channel in Arabidopsis thaliana 3,
KC1		 0.65 0.34 -0.32
22 AT1G22160 Protein of unknown function (DUF581) -0.65 0.3 -0.31
23 AT5G39610 NAC domain containing protein 6 Arabidopsis NAC domain containing
protein 92, NAC domain containing
protein 2, NAC domain containing
protein 6, NAC domain containing
protein 2, NAC domain containing
protein 6, ORESARA 1		 0.65 0.32 -0.32
24 AT1G77380 amino acid permease 3 amino acid permease 3, ATAAP3 0.64 0.31 -0.31
25 AT1G74420 fucosyltransferase 3 ATFUT3, fucosyltransferase 3 -0.64 0.33 -0.31
26 AT1G30700 FAD-binding Berberine family protein 0.64 0.3 -0.3
27 AT4G26790 GDSL-like Lipase/Acylhydrolase superfamily protein -0.64 0.31 -0.34
28 AT1G77840 Translation initiation factor IF2/IF5 0.63 0.34 -0.31
29 AT1G50590 RmlC-like cupins superfamily protein -0.63 0.31 -0.31
30 AT3G16770 ethylene-responsive element binding protein ethylene-responsive element
binding protein,
ethylene-responsive element
binding protein, ETHYLENE RESPONSE
FACTOR 72, RELATED TO AP2 3		 0.63 0.3 -0.31
31 AT5G60270 Concanavalin A-like lectin protein kinase family protein 0.63 0.34 -0.35
32 AT1G20640 Plant regulator RWP-RK family protein -0.62 0.33 -0.33
33 AT2G19800 myo-inositol oxygenase 2 myo-inositol oxygenase 2 0.62 0.34 -0.29
34 AT5G49690 UDP-Glycosyltransferase superfamily protein 0.62 0.31 -0.29
35 AT5G46050 peptide transporter 3 ARABIDOPSIS THALIANA PEPTIDE
TRANSPORTER 3, peptide transporter
3		 0.62 0.33 -0.31
36 AT1G15040 Class I glutamine amidotransferase-like superfamily protein 0.62 0.3 -0.31
37 AT3G22425 imidazoleglycerol-phosphate dehydratase HISN5A,
imidazoleglycerol-phosphate
dehydratase		 -0.62 0.31 -0.32
38 AT3G07690 6-phosphogluconate dehydrogenase family protein 0.61 0.31 -0.33
39 AT2G31440 INVOLVED IN: positive regulation of catalytic activity,
protein processing; LOCATED IN: integral to membrane;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Aph-1
(InterPro:IPR009294); Has 268 Blast hits to 262 proteins in
79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi
- 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22
(source: NCBI BLink).		 -0.61 0.32 -0.31
40 AT4G03010 RNI-like superfamily protein -0.61 0.31 -0.33
41 AT5G57655 xylose isomerase family protein 0.61 0.3 -0.31
42 AT1G25560 AP2/B3 transcription factor family protein ETHYLENE RESPONSE DNA BINDING
FACTOR 1, TEMPRANILLO 1		 0.61 0.31 -0.29
43 AT5G47880 eukaryotic release factor 1-1 eukaryotic release factor 1-1 0.61 0.33 -0.33
44 AT2G38010 Neutral/alkaline non-lysosomal ceramidase -0.61 0.32 -0.34
45 AT2G26980 CBL-interacting protein kinase 3 CBL-interacting protein kinase 3,
SNF1-RELATED PROTEIN KINASE 3.17		 0.61 0.33 -0.3
46 AT4G24040 trehalase 1 ATTRE1, trehalase 1 0.6 0.32 -0.3
47 AT1G19610 Arabidopsis defensin-like protein LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
78, PDF1.4		 0.6 0.3 -0.31
48 AT5G65480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G38060.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.59 0.3 -0.31
49 AT5G20660 Zn-dependent exopeptidases superfamily protein 0.59 0.31 -0.32
50 ATMG01180 hypothetical protein ORF111B 0.59 0.32 -0.3
51 AT5G25350 EIN3-binding F box protein 2 EIN3-binding F box protein 2 0.59 0.3 -0.31
52 AT5G12170 CRT (chloroquine-resistance transporter)-like transporter 3 CRT (chloroquine-resistance
transporter)-like transporter 3		 0.59 0.31 -0.31
53 AT1G77740 phosphatidylinositol-4-phosphate 5-kinase 2 phosphatidylinositol-4-phosphate
5-kinase 2		 -0.59 0.31 -0.33
54 AT5G44820 Nucleotide-diphospho-sugar transferase family protein 0.59 0.31 -0.32
55 AT2G05380 glycine-rich protein 3 short isoform glycine-rich protein 3 short
isoform		 0.59 0.29 -0.32
56 AT1G18290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.58 0.3 -0.3
57 AT2G29970 Double Clp-N motif-containing P-loop nucleoside
triphosphate hydrolases superfamily protein		 -0.58 0.32 -0.32
58 AT5G20930 Protein kinase superfamily protein TOUSLED -0.58 0.32 -0.31
59 AT2G25000 WRKY DNA-binding protein 60 ATWRKY60, WRKY DNA-binding protein
60		 0.58 0.31 -0.32
60 AT1G65930 cytosolic NADP+-dependent isocitrate dehydrogenase cytosolic NADP+-dependent
isocitrate dehydrogenase		 0.58 0.32 -0.31
61 AT4G21760 beta-glucosidase 47 beta-glucosidase 47 -0.58 0.3 -0.29
62 AT2G20750 expansin B1 expansin B1, ATHEXP BETA 1.5,
expansin B1		 -0.58 0.3 -0.31
63 AT3G43160 maternal effect embryo arrest 38 maternal effect embryo arrest 38 0.57 0.31 -0.29
64 AT5G08570 Pyruvate kinase family protein 0.57 0.33 -0.31
65 AT5G62230 ERECTA-like 1 ERECTA-like 1 -0.57 0.33 -0.32
66 AT5G07030 Eukaryotic aspartyl protease family protein -0.57 0.32 -0.31
67 AT4G26220 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.57 0.32 -0.32
68 AT2G36890 Duplicated homeodomain-like superfamily protein MYB DOMAIN PROTEIN 38, BLUE
INSENSITIVE TRAIT 1, MYB DOMAIN
PROTEIN 38, REGULATOR OF AXILLARY
MERISTEMS 2		 0.57 0.34 -0.32
69 AT1G04410 Lactate/malate dehydrogenase family protein cytosolic-NAD-dependent malate
dehydrogenase 1		 0.57 0.33 -0.33
70 AT3G50410 OBF binding protein 1 OBF binding protein 1 -0.56 0.33 -0.34
71 AT1G51860 Leucine-rich repeat protein kinase family protein 0.56 0.31 -0.31
72 AT3G24000 Tetratricopeptide repeat (TPR)-like superfamily protein 0.56 0.3 -0.33
73 AT1G60140 trehalose phosphate synthase trehalose phosphate synthase,
trehalose phosphate synthase,
TREHALOSE PHOSPHATE SYNTHASE 10		 0.56 0.31 -0.3
74 AT5G09220 amino acid permease 2 amino acid permease 2 -0.55 0.31 -0.3
75 AT5G64530 xylem NAC domain 1 Arabidopsis NAC domain containing
protein 104, xylem NAC domain 1		 -0.55 0.31 -0.35
76 AT3G51330 Eukaryotic aspartyl protease family protein 0.55 0.35 -0.32
77 AT3G61630 cytokinin response factor 6 cytokinin response factor 6 0.55 0.32 -0.31
78 AT2G18630 Protein of unknown function (DUF677) -0.55 0.31 -0.32
79 AT5G60460 Preprotein translocase Sec, Sec61-beta subunit protein 0.55 0.33 -0.31
80 AT3G20710 F-box family protein 0.55 0.31 -0.32
81 AT1G80370 Cyclin A2;4 Cyclin A2;4 -0.54 0.33 -0.29
82 AT2G39850 Subtilisin-like serine endopeptidase family protein -0.54 0.29 -0.32
83 AT3G25110 fatA acyl-ACP thioesterase fatA acyl-ACP thioesterase, fatA
acyl-ACP thioesterase		 -0.54 0.31 -0.29
84 AT5G14880 Potassium transporter family protein -0.53 0.29 -0.32
85 AT3G57060 binding -0.53 0.31 -0.3
86 AT4G30520 Leucine-rich repeat protein kinase family protein SENESCENCE-ASSOCIATED
RECEPTOR-LIKE KINASE		 -0.52 0.3 -0.29
87 AT3G17330 evolutionarily conserved C-terminal region 6 evolutionarily conserved
C-terminal region 6		 -0.52 0.31 -0.3
88 AT5G11930 Thioredoxin superfamily protein -0.52 0.34 -0.31
89 AT3G13980 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits
to 418 proteins in 98 species: Archae - 0; Bacteria - 6;
Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other
Eukaryotes - 1059 (source: NCBI BLink).		 -0.51 0.35 -0.32
90 AT2G38080 Laccase/Diphenol oxidase family protein ARABIDOPSIS LACCASE-LIKE
MULTICOPPER OXIDASE 4, IRREGULAR
XYLEM 12, LACCASE 4, LACCASE-LIKE
MULTICOPPER OXIDASE 4		 -0.51 0.3 -0.33
91 AT3G32400 Actin-binding FH2/DRF autoregulatory protein -0.51 0.31 -0.32
92 AT1G64780 ammonium transporter 1;2 ammonium transporter 1;2, ammonium
transporter 1;2		 -0.5 0.32 -0.33
93 AT1G62360 KNOX/ELK homeobox transcription factor BUMBERSHOOT, BUMBERSHOOT 1,
SHOOTLESS, SHOOT MERISTEMLESS,
WALDMEISTER, WALDMEISTER 1		 -0.5 0.29 -0.33
94 AT2G47880 Glutaredoxin family protein -0.5 0.32 -0.32
95 AT3G03440 ARM repeat superfamily protein -0.5 0.34 -0.31
96 AT5G03270 lysine decarboxylase family protein LONELY GUY 6 -0.49 0.3 -0.33
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
97 C0016 S-Adenosylmethionine S-Adenosyl-L-methionine S-Adenosyl-L-methionine ethylene biosynthesis I (plants),
scopoletin biosynthesis,
quercetinsulphates biosynthesis,
siroheme biosynthesis,
gibberellin inactivation II (methylation),
suberin biosynthesis,
volatile benzenoid biosynthesis I (ester formation),
S-adenosyl-L-methionine cycle II,
methylhalides biosynthesis (plants),
S-methylmethionine cycle,
ubiquinol-9 biosynthesis (eukaryotic),
nicotianamine biosynthesis,
methionine biosynthesis II,
spermine biosynthesis,
choline biosynthesis II,
diphthamide biosynthesis,
homogalacturonan biosynthesis,
phosphatidylcholine biosynthesis II,
methylquercetin biosynthesis,
plastoquinol biosynthesis,
chlorophyllide a biosynthesis I,
ferulate and sinapate biosynthesis,
ubiquinol-10 biosynthesis (eukaryotic),
phenylpropanoid biosynthesis,
free phenylpropanoid acid biosynthesis,
seleno-amino acid detoxification and volatilization I,
plant sterol biosynthesis,
lipoate biosynthesis and incorporation I,
methyl indole-3-acetate interconversion,
cyclopropane and cyclopropene fatty acid biosynthesis,
spermidine biosynthesis I,
thiamine biosynthesis II,
methionine salvage pathway,
spermidine hydroxycinnamic acid conjugates biosynthesis,
simple coumarins biosynthesis,
phosphatidylcholine biosynthesis IV,
glutathione-mediated detoxification II,
S-adenosyl-L-methionine biosynthesis,
methionine degradation I (to homocysteine),
phosphatidylcholine biosynthesis III,
phylloquinol biosynthesis,
choline biosynthesis I,
biotin biosynthesis II,
vitamin E biosynthesis 		-0.81 0.45 -0.48 C0016
98 C0081 Digalactosyldiacylglycerol-36:2 - Digalactosyldiacylglycerol-36:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.63 0.45 -0.49 C0081
99 C0191 Ornithine D,L-Ornithine L-Ornithine arginine degradation I (arginase pathway),
urea cycle,
ornithine biosynthesis,
proline biosynthesis III,
arginine degradation VI (arginase 2 pathway),
arginine biosynthesis II (acetyl cycle),
citrulline biosynthesis,
L-Ndelta-acetylornithine biosynthesis,
arginine biosynthesis I,
citrulline degradation 		0.55 0.31 -0.31 C0191
100 C0209 Phosphoric acid - - ascorbate biosynthesis,
GDP biosynthesis,
polysaccharide biosynthesis 		-0.52 0.31 -0.32